Experiment set38IT016 for Pseudomonas putida KT2440

Compare to:

R2A control with 0.2X Vogels

200 most important genes:

  gene name fitness t score description  
PP_5095 -5.4 -3.7 pyrroline-5-carboxylate reductase compare
PP_4799 -5.1 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -4.7 -7.6 conserved lipoprotein of unknown function compare
PP_0691 -4.6 -6.2 Glutamate 5-kinase compare
PP_1783 -4.2 -4.1 dTDP-glucose pyrophosphorylase compare
PP_4724 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_4693 -3.8 -7.1 RNA polymerase-binding transcription factor DksA compare
PP_4999 -3.7 -2.6 dihydroorotase-like protein compare
PP_4700 -3.6 -5.4 pantothenate synthetase compare
PP_4265 -3.4 -5.1 DNA-binding transcriptional dual regulator compare
PP_4804 -3.4 -4.7 RlpA-like lipoprotein compare
PP_4723 -3.3 -2.3 Carbamoyl-phosphate synthase large chain compare
PP_0719 -2.9 -3.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4126 -2.7 -3.1 NADH-quinone oxidoreductase subunit I compare
PP_4902 -2.5 -2.9 Oligoribonuclease compare
PP_1237 -2.3 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4895 -2.1 -3.5 tRNA dimethylallyltransferase compare
PP_4098 -2.0 -2.4 UvrABC system protein C compare
PP_1568 -2.0 -2.0 conserved protein of unknown function compare
PP_1186 -2.0 -3.0 two component system DNA-binding transcriptional dual regulator compare
PP_0393 -2.0 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2371 -2.0 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4406 -2.0 -2.1 conserved protein of unknown function compare
PP_0833 -1.9 -2.1 queuine tRNA-ribosyltransferase compare
PP_1734 -1.9 -4.0 Probable septum site-determining protein MinC compare
PP_3999 -1.8 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4560 -1.8 -4.7 putative Ribonuclease BN compare
PP_2322 -1.8 -3.8 Major outer membrane lipoprotein compare
PP_2328 -1.8 -3.7 Phosphoadenosine phosphosulfate reductase compare
PP_4004 -1.7 -5.2 DNA translocase FtsK compare
PP_t12 -1.7 -1.5 tRNA-Thr compare
PP_1002 -1.7 -4.9 arginine/ornithine antiporter compare
PP_1215 -1.6 -3.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1664 -1.6 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3946 -1.6 -2.1 HTH-type transcriptional repressor NicR compare
PP_4120 -1.5 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_4124 -1.5 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_2378 -1.5 -1.8 Fe/S biogenesis protein NfuA compare
PP_2414 -1.5 -1.4 conserved exported protein of unknown function compare
PP_1232 -1.5 -7.8 conserved exported protein of unknown function compare
PP_4254 -1.4 -2.2 conserved protein of unknown function compare
PP_1217 -1.4 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2370 -1.4 -1.8 conserved protein of unknown function compare
PP_0339 -1.4 -3.2 Pyruvate dehydrogenase E1 component compare
PP_1733 -1.4 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_2337 -1.4 -2.2 aconitate isomerase compare
PP_0685 -1.3 -2.7 conserved protein of unknown function compare
PP_4204 -1.3 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0293 -1.3 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2000 -1.3 -2.2 amidophosphoribosyl transferase compare
PP_1224 -1.3 -4.5 periplasmic subunit of the TolQRA transport system compare
PP_2336 -1.2 -2.7 aconitate hydratase 1 compare
PP_2280 -1.2 -2.3 conserved protein of unknown function compare
PP_4008 -1.2 -4.5 ATP-dependent serine protease compare
PP_4504 -1.2 -2.2 conserved exported protein of unknown function compare
PP_0957 -1.2 -2.1 D-arabinose 5-phosphate isomerase compare
PP_5528 -1.2 -1.5 conserved protein of unknown function compare
PP_4909 -1.2 -4.4 phosphoserine phosphatase compare
PP_1468 -1.2 -1.9 Tyrosine recombinase XerD compare
PP_2341 -1.1 -2.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1269 -1.1 -1.2 Universal stress protein family compare
PP_1353 -1.1 -2.8 conserved membrane protein of unknown function compare
PP_3102 -1.1 -2.9 conserved protein of unknown function compare
PP_0998 -1.1 -5.2 conserved protein of unknown function compare
PP_2121 -1.1 -1.5 putative Lipoprotein compare
PP_5090 -1.1 -2.6 putative cell division protein compare
PP_1216 -1.1 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_t10 -1.1 -1.8 tRNA-Pro compare
PP_0164 -1.1 -3.8 conserved protein of unknown function compare
PP_1187 -1.1 -5.4 sensor protein compare
PP_1000 -1.1 -3.2 ornithine carbamoyltransferase, catabolic compare
PP_5310 -1.1 -4.4 junction-specific ATP-dependent DNA helicase compare
PP_2804 -1.1 -3.6 Hydrolase, alpha/beta fold family compare
PP_4263 -1.0 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2107 -1.0 -1.5 conserved protein of unknown function compare
PP_5313 -1.0 -1.7 DNA-binding protein HU-alpha compare
PP_4058 -1.0 -5.7 1,4-alpha-glucan branching enzyme compare
PP_2681 -1.0 -1.4 coenzyme PQQ synthesis protein D compare
PP_2320 -1.0 -6.1 conserved exported protein of unknown function compare
PP_1208 -1.0 -1.4 conserved protein of unknown function, SlyX family compare
PP_5706 -1.0 -2.0 Sec translocation complex - SecG subunit compare
PP_1729 -1.0 -1.7 conserved protein of unknown function compare
PP_1912 -1.0 -3.3 Phosphate acyltransferase compare
PP_4642 -1.0 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4785 -1.0 -3.0 conserved exported protein of unknown function compare
PP_1198 -1.0 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4696 -1.0 -2.9 Nitrogen regulation protein NR(I) compare
PP_1045 -1.0 -2.0 Type II secretion pathway protein XcpP compare
PP_1026 -1.0 -2.2 Peptidase, M23/M37 family compare
PP_5701 -1.0 -1.6 conserved protein of unknown function compare
PP_1238 -1.0 -3.0 putative Lipoprotein compare
PP_2510 -0.9 -1.0 conserved protein of unknown function compare
PP_2323 -0.9 -5.5 conserved protein of unknown function compare
PP_2214 -0.9 -3.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0999 -0.9 -3.5 carbamate kinase compare
PP_2718 -0.9 -2.5 arsenic resistance transcriptional regulator compare
PP_5230 -0.9 -2.7 Tyrosine recombinase XerC compare
PP_3473 -0.9 -2.6 curli secretion and assembly outer membrane associated component compare
PP_2327 -0.9 -2.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1779 -0.9 -3.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2088 -0.9 -2.0 RNA polymerase sigma factor SigX compare
PP_4532 -0.9 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5216 -0.9 -0.9 exopolyphosphatase compare
PP_0003 -0.9 -2.4 16S RNA methyltransferase compare
PP_1764 -0.9 -2.1 Phosphoglycolate phosphatase 2 compare
PP_4944 -0.8 -2.5 Carbamoyltransferase compare
PP_2403 -0.8 -1.4 Chemotaxis protein CheY compare
PP_5289 -0.8 -2.7 Acetylglutamate kinase compare
PP_4332 -0.8 -3.7 Chemotaxis protein CheW compare
PP_3821 -0.8 -3.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5185 -0.8 -3.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5329 -0.8 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0065 -0.8 -2.1 NAD-binding component of TrK potassium transporter compare
PP_5155 -0.8 -2.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0653 -0.8 -1.1 conserved protein of unknown function compare
PP_0184 -0.8 -3.6 Argininosuccinate lyase compare
PP_4964 -0.8 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0888 -0.8 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_1994 -0.8 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0852 -0.8 -1.7 Transcriptional regulator, Cro/CI family compare
PP_0832 -0.8 -1.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3892 -0.8 -1.0 conserved protein of unknown function compare
PP_2835 -0.8 -1.8 putative oxidoreductase compare
PP_2932 -0.8 -3.1 Amidase family protein compare
PP_0001 -0.7 -0.9 probable chromosome-partitioning protein compare
PP_2900 -0.7 -1.4 conserved protein of unknown function compare
PP_4139 -0.7 -1.5 conserved protein of unknown function compare
PP_0123 -0.7 -4.1 DNA polymerase I, 5 compare
PP_5007 -0.7 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3904 -0.7 -2.7 conserved protein of unknown function compare
PP_0809 -0.7 -4.3 disulfide bond formation protein B compare
PP_3245 -0.7 -0.8 conserved protein of unknown function compare
PP_5015 -0.7 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2417 -0.7 -2.1 putative Iron ABC transporter, permease protein compare
PP_3018 -0.7 -2.0 conserved protein of unknown function compare
PP_3065 -0.7 -4.1 Pyocin R2_PP, tail formation compare
PP_1812 -0.7 -1.5 conserved protein of unknown function compare
PP_3120 -0.7 -3.5 methylglyoxal reductase compare
PP_0063 -0.7 -2.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1268 -0.7 -1.9 putative HtrA suppressor protein sohA compare
PP_5705 -0.7 -1.7 protein of unknown function compare
PP_5327 -0.7 -2.0 putative phosphate ABC transporter, permease subunit compare
PP_1829 -0.7 -1.8 Hydrolase, alpha/beta fold family compare
PP_2299 -0.7 -2.9 Trigger factor compare
PP_3204 -0.7 -1.9 conserved protein of unknown function compare
PP_1763 -0.7 -1.5 putative oxidoreductase compare
PP_0127 -0.7 -2.1 Thiol:disulfide interchange protein compare
PP_4880 -0.7 -4.2 exoribonuclease R compare
PP_5027 -0.7 -0.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2132 -0.7 -2.1 Universal stress protein compare
PP_3474 -0.7 -3.3 putative Curli fiber protein CsgE compare
PP_1022 -0.7 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1623 -0.7 -3.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_1068 -0.7 -1.4 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1855 -0.6 -1.6 conserved exported protein of unknown function compare
PP_2490 -0.6 -2.7 Flavoprotein compare
PP_0801 -0.6 -1.0 conserved exported protein of unknown function compare
PP_4980 -0.6 -3.4 ATP-dependent RNA helicase compare
PP_4250 -0.6 -3.1 cytochrome c oxidase subunit I, cbb3-type compare
PP_1028 -0.6 -1.6 Transcriptional regulator, LysR family compare
PP_1076 -0.6 -2.7 aquaglyceroporin compare
PP_1562 -0.6 -0.8 putative Phage terminase, small subunit compare
PP_1778 -0.6 -3.1 Lipopolysaccharide ABC export system, permease protein compare
PP_1319 -0.6 -1.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4943 -0.6 -1.4 putative Glycosyl transferase compare
PP_5139 -0.6 -2.6 cadmium translocating P-type ATPase compare
PP_2611 -0.6 -1.8 membrane protein of unknown function compare
PP_5624 -0.6 -2.1 conserved protein of unknown function compare
PP_0673 -0.6 -0.9 conserved protein of unknown function compare
PP_4994 -0.6 -1.6 conserved protein of unknown function compare
PP_5243 -0.6 -2.2 putative hydrolase compare
PP_3241 -0.6 -0.9 conserved exported protein of unknown function compare
PP_1097 -0.6 -0.9 Methionine--tRNA ligase compare
PP_3647 -0.6 -1.3 putative Oxidoreductase compare
PP_2749 -0.6 -2.0 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1185 -0.6 -3.1 Outer membrane protein H1 compare
PP_2307 -0.6 -1.9 conserved protein of unknown function compare
PP_2929 -0.6 -2.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0194 -0.6 -2.9 Transcriptional regulatory protein AlgP compare
PP_1598 -0.6 -2.3 regulatory intramembrane protein RIP zinc protease compare
PP_0094 -0.6 -2.2 5'-nucleotidase compare
PP_5162 -0.6 -1.8 conserved exported protein of unknown function compare
PP_2319 -0.6 -2.4 conserved protein of unknown function compare
PP_4253 -0.6 -1.0 cytochrome c oxidase subunit, cbb3-type compare
PP_4129 -0.6 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2118 -0.6 -1.9 conserved protein of unknown function compare
PP_2677 -0.6 -1.0 conserved exported protein of unknown function compare
PP_1326 -0.6 -2.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4227 -0.6 -1.0 conserved protein of unknown function compare
PP_4266 -0.6 -1.8 Adenine phosphoribosyltransferase compare
PP_5047 -0.6 -2.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0007 -0.6 -1.3 conserved hypothetical protein compare
PP_0777 -0.6 -2.2 Glutathione peroxidase compare
PP_2581 -0.6 -1.1 conserved protein of unknown function compare
PP_3880 -0.6 -0.8 conserved exported protein of unknown function compare
PP_0195 -0.6 -1.5 conserved protein of unknown function compare
PP_0202 -0.5 -3.0 CBS domain-containing protein compare
PP_5152 -0.5 -2.0 conserved exported protein of unknown function compare
PP_1987 -0.5 -1.4 Methlytransferase, UbiE/COQ5 family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control with 0.2x vogels experiments

For r2a control with 0.2x vogels Vogels_fungal_media across organisms