Experiment set38IT014 for Pseudomonas putida KT2440

Compare to:

R2A control with 0.2X Vogels

200 most important genes:

  gene name fitness t score description  
PP_4902 -5.8 -5.4 Oligoribonuclease compare
PP_4265 -5.4 -3.7 DNA-binding transcriptional dual regulator compare
PP_5095 -5.2 -2.7 pyrroline-5-carboxylate reductase compare
PP_2414 -5.1 -3.1 conserved exported protein of unknown function compare
PP_3926 -4.3 -1.6 short-chain dehydrogenase compare
PP_4799 -4.1 -5.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0691 -3.9 -4.0 Glutamate 5-kinase compare
PP_4720 -3.9 -2.5 putative RNA binding protein compare
PP_4724 -3.6 -5.4 Carbamoyl-phosphate synthase small chain compare
PP_4999 -3.6 -2.0 dihydroorotase-like protein compare
PP_1654 -3.5 -3.4 cysteine synthase B compare
PP_1002 -3.3 -5.7 arginine/ornithine antiporter compare
PP_4700 -3.0 -4.2 pantothenate synthetase compare
PP_3810 -3.0 -2.1 conserved protein of unknown function compare
PP_4723 -2.9 -4.9 Carbamoyl-phosphate synthase large chain compare
PP_4693 -2.9 -4.9 RNA polymerase-binding transcription factor DksA compare
PP_5328 -2.9 -3.3 putative phosphate transport system permease protein compare
PP_2898 -2.9 -2.6 conserved exported protein of unknown function compare
PP_3234 -2.9 -2.9 Heat shock protein, HSP20 family compare
PP_3312 -2.6 -1.4 putative Heat shock protein compare
PP_5528 -2.6 -1.9 conserved protein of unknown function compare
PP_1353 -2.5 -3.0 conserved membrane protein of unknown function compare
PP_1269 -2.5 -1.3 Universal stress protein family compare
PP_0856 -2.4 -3.8 conserved lipoprotein of unknown function compare
PP_4204 -2.4 -4.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2371 -2.3 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5248 -2.2 -1.2 putative hydrolase compare
PP_0948 -2.2 -1.4 Phosphocarrier protein HPr compare
PP_2328 -2.1 -4.0 Phosphoadenosine phosphosulfate reductase compare
PP_5393 -2.1 -1.9 putative metal-binding chaperone compare
PP_4560 -2.1 -5.1 putative Ribonuclease BN compare
PP_t10 -2.1 -1.7 tRNA-Pro compare
PP_4004 -2.0 -3.5 DNA translocase FtsK compare
PP_5216 -2.0 -2.5 exopolyphosphatase compare
PP_0998 -1.9 -4.3 conserved protein of unknown function compare
PP_5007 -1.9 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1664 -1.8 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5471 -1.7 -1.8 putative response regulator receiver protein compare
PP_5267 -1.7 -1.1 putative cytochrome c5 compare
PP_3365 -1.7 -1.2 Acetolactate synthase compare
PP_4120 -1.7 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_0833 -1.7 -1.5 queuine tRNA-ribosyltransferase compare
PP_0719 -1.7 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4848 -1.6 -1.7 Curved DNA-binding protein compare
PP_4271 -1.6 -1.0 conserved protein of unknown function compare
PP_0801 -1.6 -1.3 conserved exported protein of unknown function compare
PP_3821 -1.6 -3.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0164 -1.6 -3.0 conserved protein of unknown function compare
PP_2378 -1.6 -1.7 Fe/S biogenesis protein NfuA compare
PP_0888 -1.5 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_2322 -1.5 -2.9 Major outer membrane lipoprotein compare
PP_3398 -1.5 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5327 -1.5 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_0832 -1.5 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3505 -1.5 -1.0 conserved protein of unknown function compare
PP_1774 -1.5 -2.1 conserved exported protein of unknown function compare
PP_1912 -1.5 -2.5 Phosphate acyltransferase compare
PP_1214 -1.5 -1.3 putative transcriptional regulatory protein compare
PP_2002 -1.5 -2.0 putative enzyme compare
PP_5SB -1.4 -1.8 5S ribosomal RNA compare
PP_1001 -1.4 -1.9 arginine deiminase compare
PP_5028 -1.4 -2.5 proline iminopeptidase compare
PP_0775 -1.4 -1.3 conserved protein of unknown function compare
PP_1733 -1.4 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5198 -1.3 -2.0 conserved protein of unknown function compare
PP_5022 -1.3 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PP_1734 -1.3 -2.4 Probable septum site-determining protein MinC compare
PP_4273 -1.3 -0.8 Transcriptional regulator, MerR family compare
PP_3906 -1.3 -1.4 conserved protein of unknown function compare
PP_2655 -1.3 -1.4 conserved protein of unknown function compare
PP_3904 -1.3 -3.0 conserved protein of unknown function compare
PP_1778 -1.2 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_0401 -1.2 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_0963 -1.2 -1.0 putative BolA family protein compare
PP_4129 -1.2 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2510 -1.2 -1.0 conserved protein of unknown function compare
PP_1609 -1.2 -2.2 conserved protein of unknown function compare
PP_5223 -1.2 -2.7 regulator of nucleotide diphosphokinase compare
PP_1216 -1.2 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2499 -1.1 -1.2 conserved protein of unknown function compare
PP_2341 -1.1 -1.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3407 -1.1 -2.1 conserved protein of unknown function compare
PP_0984 -1.1 -1.3 conserved membrane protein of unknown function compare
PP_3487 -1.1 -1.0 conserved exported protein of unknown function compare
PP_1186 -1.1 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_3014 -1.1 -1.7 conserved exported protein of unknown function compare
PP_5706 -1.1 -1.2 Sec translocation complex - SecG subunit compare
PP_3738 -1.1 -1.9 putative Transcriptional regulator VanR compare
PP_5224 -1.1 -2.0 conserved protein of unknown function compare
PP_1489 -1.1 -2.7 CheW domain protein compare
PP_4828 -1.1 -1.0 Precorrin-8X methylmutase compare
PP_4122 -1.1 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0630 -1.1 -0.8 DNA gyrase inhibitor YacG compare
PP_4880 -1.1 -4.3 exoribonuclease R compare
PP_2320 -1.1 -6.1 conserved exported protein of unknown function compare
PP_2215 -1.0 -2.2 acetyl-CoA acetyltransferase compare
PP_3411 -1.0 -1.0 conserved protein of unknown function compare
PP_0276 -1.0 -0.9 Transcriptional regulator, Cro/CI family compare
PP_3110 -1.0 -1.4 protein of unknown function compare
PP_3967 -1.0 -2.3 MutT/nudix family protein compare
PP_3265 -1.0 -1.0 putative phosphohydrolase of unknown function compare
PP_5609 -1.0 -1.6 conserved protein of unknown function compare
PP_3999 -1.0 -2.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2054 -1.0 -1.6 putative DNA-binding transcriptional regulator compare
PP_5652 -1.0 -1.4 conserved protein of unknown function, phage origin compare
PP_2960 -1.0 -2.3 transcriptional regulator, AraC family compare
PP_2503 -1.0 -1.8 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_5589 -1.0 -1.2 protein of unknown function containing Rhs repeat-associated core domain compare
PP_1068 -1.0 -1.9 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1224 -1.0 -4.3 periplasmic subunit of the TolQRA transport system compare
PP_5185 -1.0 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0825 -1.0 -1.9 phosphonates import ATP-binding protein compare
PP_4804 -1.0 -1.5 RlpA-like lipoprotein compare
PP_5114 -1.0 -1.2 putative adenine methyltransferase compare
PP_5329 -1.0 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0643 -1.0 -2.2 protein of unknown function compare
PP_0610 -1.0 -1.4 conserved exported protein of unknown function compare
PP_2496 -1.0 -1.4 conserved protein of unknown function compare
PP_2794 -1.0 -0.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4569 -1.0 -2.3 conserved protein of unknown function compare
PP_4010 -0.9 -1.5 DNA replication inhibitor compare
PP_2172 -0.9 -1.8 conserved exported protein of unknown function compare
PP_5693 -0.9 -2.8 conserved protein of unknown function compare
PP_2514 -0.9 -1.9 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_0240 -0.9 -0.9 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2121 -0.9 -0.7 putative Lipoprotein compare
PP_3241 -0.9 -0.9 conserved exported protein of unknown function compare
PP_0999 -0.9 -1.6 carbamate kinase compare
PP_4769 -0.9 -1.9 conserved protein of unknown function compare
PP_4073 -0.9 -1.0 conserved exported protein of unknown function compare
PP_5008 -0.9 -0.7 Poly granule-associated protein compare
PP_1028 -0.9 -1.9 Transcriptional regulator, LysR family compare
PP_5139 -0.9 -2.5 cadmium translocating P-type ATPase compare
PP_2370 -0.9 -1.1 conserved protein of unknown function compare
PP_0273 -0.9 -2.4 conserved protein of unknown function compare
PP_1268 -0.9 -1.6 putative HtrA suppressor protein sohA compare
PP_1217 -0.9 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0393 -0.9 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2750 -0.9 -0.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2593 -0.9 -2.0 Ferric siderophore ABC transporter, permease protein compare
PP_1206 -0.9 -3.1 basic-amino-acid specific porin OprD compare
PP_4964 -0.9 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0122 -0.9 -1.5 conserved exported protein of unknown function compare
PP_2337 -0.9 -0.9 aconitate isomerase compare
PP_2846 -0.9 -1.0 urease accessory protein compare
PP_2932 -0.8 -2.4 Amidase family protein compare
PP_0307 -0.8 -1.2 conserved exported protein of unknown function compare
PP_2564 -0.8 -3.4 putative Quercetin 2,3-dioxygenase compare
PP_1000 -0.8 -2.0 ornithine carbamoyltransferase, catabolic compare
PP_5519 -0.8 -1.2 conserved protein of unknown function of phage origin compare
PP_3295 -0.8 -1.6 YeeE/YedE family protein compare
PP_5140 -0.8 -1.4 Transcriptional regulator, MerR family compare
PP_2327 -0.8 -1.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1076 -0.8 -2.2 aquaglyceroporin compare
PP_t29 -0.8 -0.6 tRNA-Ala compare
PP_4571 -0.8 -2.7 cysteine synthase A compare
PP_2500 -0.8 -2.2 conserved protein of unknown function compare
PP_2229 -0.8 -1.6 putative K(+)/H(+) antiporter subunit C compare
PP_2633 -0.8 -0.7 conserved protein of unknown function compare
PP_1468 -0.8 -1.5 Tyrosine recombinase XerD compare
PP_1131 -0.8 -1.7 outer membrane lipoprotein compare
PP_4124 -0.8 -1.6 NADH-quinone oxidoreductase subunit G compare
PP_1770 -0.8 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1802 -0.8 -4.8 glycosyl transferase compare
PP_1764 -0.8 -1.1 Phosphoglycolate phosphatase 2 compare
PP_3102 -0.8 -1.7 conserved protein of unknown function compare
PP_5543 -0.8 -2.3 protein of unknown function compare
PP_4094 -0.8 -0.9 conserved protein of unknown function compare
PP_2821 -0.8 -1.9 conserved exported protein of unknown function compare
PP_2768 -0.8 -1.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4213 -0.8 -0.7 putative dipeptidase compare
PP_5310 -0.8 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_4701 -0.8 -0.6 glucose-6-phosphate isomerase compare
PP_1986 -0.8 -1.3 3-isopropylmalate dehydratase small subunit compare
PP_4121 -0.8 -2.0 NADH-quinone oxidoreductase subunit C/D compare
PP_2582 -0.8 -1.5 putative Heme oxygenase compare
PP_1198 -0.8 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4471 -0.8 -1.4 Magnesium transporter compare
PP_1439 -0.8 -0.9 conserved exported protein of unknown function compare
PP_3773 -0.8 -1.2 conserved protein of unknown function compare
PP_3065 -0.8 -2.3 Pyocin R2_PP, tail formation compare
PP_2729 -0.8 -1.5 conserved protein of unknown function compare
PP_4054 -0.8 -1.3 conserved protein of unknown function compare
PP_4329 -0.8 -0.9 FlhB domain protein compare
PP_0633 -0.8 -2.0 Type 4 fimbrial assembly protein PilC compare
PP_0275 -0.7 -2.1 conserved protein of unknown function compare
PP_1516 -0.7 -1.8 RND membrane fusion protein compare
PP_2336 -0.7 -1.3 aconitate hydratase 1 compare
PP_0065 -0.7 -1.1 NAD-binding component of TrK potassium transporter compare
PP_0246 -0.7 -1.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_4528 -0.7 -0.6 conserved protein of unknown function compare
PP_t12 -0.7 -0.7 tRNA-Thr compare
PP_2634 -0.7 -2.3 putative Cellulose synthase compare
PP_5295 -0.7 -0.7 conserved protein of unknown function compare
PP_5568 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_2313 -0.7 -1.2 conserved membrane protein of unknown function compare
PP_2826 -0.7 -2.4 Transcriptional regulator MexT compare
PP_4797 -0.7 -0.8 conserved protein of unknown function compare
PP_5283 -0.7 -2.5 periplasmic dipeptide transport protein compare
PP_1679 -0.7 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control with 0.2x vogels experiments

For r2a control with 0.2x vogels Vogels_fungal_media across organisms