Experiment set38IT013 for Pseudomonas putida KT2440

Compare to:

R2A control with 0.2X Vogels

200 most important genes:

  gene name fitness t score description  
PP_2720 -6.1 -1.8 conserved protein of unknown function compare
PP_0856 -5.3 -7.2 conserved lipoprotein of unknown function compare
PP_4799 -5.0 -3.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4122 -4.8 -3.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3938 -4.8 -1.9 conserved protein of unknown function compare
PP_4693 -4.2 -8.1 RNA polymerase-binding transcription factor DksA compare
PP_1654 -4.0 -2.7 cysteine synthase B compare
PP_4098 -4.0 -4.0 UvrABC system protein C compare
PP_2378 -3.9 -3.8 Fe/S biogenesis protein NfuA compare
PP_4902 -3.7 -3.7 Oligoribonuclease compare
PP_0691 -3.6 -3.1 Glutamate 5-kinase compare
PP_4265 -3.6 -3.9 DNA-binding transcriptional dual regulator compare
PP_4999 -3.6 -2.2 dihydroorotase-like protein compare
PP_0566 -3.6 -1.4 translation-related factor compare
PP_4724 -3.2 -3.8 Carbamoyl-phosphate synthase small chain compare
PP_2414 -3.1 -2.2 conserved exported protein of unknown function compare
PP_1269 -3.0 -1.5 Universal stress protein family compare
PP_4700 -2.8 -3.6 pantothenate synthetase compare
PP_4723 -2.7 -5.5 Carbamoyl-phosphate synthase large chain compare
PP_2000 -2.6 -1.8 amidophosphoribosyl transferase compare
PP_2337 -2.5 -3.0 aconitate isomerase compare
PP_2899 -2.4 -1.6 conserved exported protein of unknown function compare
PP_2459 -2.4 -1.5 ribose pyranase compare
PP_5329 -2.4 -4.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4895 -2.3 -3.4 tRNA dimethylallyltransferase compare
PP_1215 -2.3 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0719 -2.3 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0001 -2.3 -1.5 probable chromosome-partitioning protein compare
PP_5328 -2.2 -2.0 putative phosphate transport system permease protein compare
PP_0855 -2.2 -1.8 conserved protein of unknown function compare
PP_2371 -2.2 -3.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4124 -2.1 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_3715 -2.0 -2.3 Muconate cycloisomerase 1 compare
PP_3043 -2.0 -2.1 conserved protein of unknown function compare
PP_1142 -2.0 -1.2 conserved protein of unknown function compare
PP_3999 -1.9 -4.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1001 -1.8 -3.4 arginine deiminase compare
PP_4560 -1.8 -4.3 putative Ribonuclease BN compare
PP_t12 -1.8 -1.3 tRNA-Thr compare
PP_1664 -1.8 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4874 -1.8 -1.5 50S ribosomal protein L9 compare
PP_2144 -1.8 -2.8 Transcriptional regulator, TetR family compare
PP_4129 -1.8 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4532 -1.7 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5100 -1.7 -2.3 dITP/XTP pyrophosphatase compare
PP_4701 -1.7 -1.1 glucose-6-phosphate isomerase compare
PP_4204 -1.7 -3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4262 -1.7 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2370 -1.6 -1.9 conserved protein of unknown function compare
PP_4964 -1.6 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2214 -1.6 -2.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4199 -1.6 -1.0 putative Lipoprotein compare
PP_5155 -1.6 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0401 -1.6 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_3519 -1.5 -1.3 putative Lipoprotein compare
PP_1000 -1.5 -3.2 ornithine carbamoyltransferase, catabolic compare
PP_1733 -1.5 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_3227 -1.5 -2.2 Transcriptional regulator, LysR family compare
PP_4004 -1.5 -3.4 DNA translocase FtsK compare
PP_0393 -1.5 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2322 -1.5 -4.8 Major outer membrane lipoprotein compare
PP_2031 -1.5 -2.5 conserved protein of unknown function compare
PP_1553 -1.5 -1.3 conserved protein of unknown function compare
PP_4121 -1.4 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_3239 -1.4 -1.8 putative cointegrate resolution protein T Tn4652 compare
PP_3808 -1.4 -1.7 Antibiotic synthesis protein MbtH compare
PP_1366 -1.4 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1994 -1.4 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0319 -1.4 -1.8 conserved protein of unknown function compare
PP_4271 -1.4 -1.0 conserved protein of unknown function compare
PP_4943 -1.4 -1.6 putative Glycosyl transferase compare
PP_4213 -1.3 -1.3 putative dipeptidase compare
PP_1198 -1.3 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0888 -1.3 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_5317 -1.3 -1.7 Probable chorismate pyruvate-lyase compare
PP_5533 -1.3 -1.3 conserved protein of unknown function compare
PP_2121 -1.3 -2.3 putative Lipoprotein compare
PP_4130 -1.3 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4875 -1.3 -2.8 conserved membrane protein of unknown function compare
PP_2820 -1.3 -1.2 HTH-type transcriptional regulator nfxB compare
PP_1404 -1.3 -1.2 conserved protein of unknown function compare
PP_5748 -1.3 -1.3 cytochrome c heme lyase subunit compare
PP_2615 -1.3 -1.7 hemolysin-coregulated protein compare
PP_5594 -1.3 -1.4 conserved protein of unknown function compare
PP_4251 -1.3 -1.1 cytochrome c oxidase subunit, cbb3-type compare
PP_1734 -1.3 -2.4 Probable septum site-determining protein MinC compare
PP_1214 -1.2 -2.0 putative transcriptional regulatory protein compare
PP_0022 -1.2 -0.9 hypothetical protein compare
PP_1216 -1.2 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1554 -1.2 -1.1 conserved protein of unknown function compare
PP_1764 -1.2 -1.6 Phosphoglycolate phosphatase 2 compare
PP_5706 -1.2 -1.7 Sec translocation complex - SecG subunit compare
PP_1829 -1.2 -2.5 Hydrolase, alpha/beta fold family compare
PP_1002 -1.2 -2.7 arginine/ornithine antiporter compare
PP_2510 -1.2 -1.7 conserved protein of unknown function compare
PP_4471 -1.1 -2.2 Magnesium transporter compare
PP_4561 -1.1 -0.9 stress response protein compare
PP_5582 -1.1 -0.9 conserved protein of unknown function compare
PP_0666 -1.1 -2.0 conserved protein of unknown function compare
PP_4120 -1.1 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_5201 -1.1 -1.5 conserved protein of unknown function, UPF0149 family compare
PP_3241 -1.1 -1.0 conserved exported protein of unknown function compare
PP_1099 -1.1 -1.0 Cold shock protein CapB compare
PP_0984 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_3637 -1.1 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1317 -1.1 -1.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4848 -1.1 -1.8 Curved DNA-binding protein compare
PP_3105 -1.1 -1.1 conserved membrane protein of unknown function compare
PP_4988 -1.1 -3.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0184 -1.0 -3.3 Argininosuccinate lyase compare
PP_4133 -1.0 -1.7 Transcriptional regulator-related protein compare
PP_4961 -1.0 -1.0 putative Lipoprotein compare
PP_0516 -1.0 -1.5 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4785 -1.0 -3.0 conserved exported protein of unknown function compare
PP_4340 -1.0 -2.0 response regulator for chemotactic signal transduction compare
PP_0213 -1.0 -3.8 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_1326 -1.0 -3.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2454 -1.0 -2.1 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_3806 -1.0 -1.7 Hydrolase, isochorismatase family compare
PP_1455 -1.0 -2.2 conserved protein of unknown function compare
PP_5546 -1.0 -0.7 conserved protein of unknown function compare
PP_0556 -1.0 -1.5 Acetoin catabolism protein compare
PP_5331 -1.0 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_0962 -1.0 -1.1 toluene-tolerance protein compare
PP_5327 -0.9 -1.5 putative phosphate ABC transporter, permease subunit compare
PP_4797 -0.9 -1.1 conserved protein of unknown function compare
PP_1187 -0.9 -2.8 sensor protein compare
PP_4952 -0.9 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5230 -0.9 -2.5 Tyrosine recombinase XerC compare
PP_2932 -0.9 -2.4 Amidase family protein compare
PP_3118 -0.9 -2.1 DNA linked enzyme involved in DNA repair compare
PP_0240 -0.9 -1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4829 -0.9 -1.8 putative precorrin-3B synthase compare
PP_1042 -0.9 -2.3 Type II secretion system protein K compare
PP_5580 -0.9 -0.6 protein of unknown function compare
PP_4074 -0.9 -2.2 conserved protein of unknown function compare
PP_1729 -0.9 -1.0 conserved protein of unknown function compare
PP_1208 -0.9 -1.8 conserved protein of unknown function, SlyX family compare
PP_2328 -0.9 -1.6 Phosphoadenosine phosphosulfate reductase compare
PP_5381 -0.9 -2.2 hypothetical protein compare
PP_2003 -0.9 -1.9 conserved protein of unknown function compare
PP_1076 -0.9 -2.1 aquaglyceroporin compare
PP_2677 -0.9 -1.2 conserved exported protein of unknown function compare
PP_4497 -0.9 -2.8 conserved protein of unknown function compare
PP_0832 -0.9 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2903 -0.9 -1.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2002 -0.9 -1.9 putative enzyme compare
PP_2668 -0.9 -1.2 ABC efflux transporter, ATP-binding protein compare
PP_1353 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_4073 -0.8 -0.4 conserved exported protein of unknown function compare
PP_4528 -0.8 -1.4 conserved protein of unknown function compare
PP_1756 -0.8 -1.8 conserved exported protein of unknown function compare
PP_2217 -0.8 -1.2 enoyl-CoA hydratase compare
PP_5095 -0.8 -0.5 pyrroline-5-carboxylate reductase compare
PP_0007 -0.8 -2.3 conserved hypothetical protein compare
PP_2745 -0.8 -1.4 Universal stress protein family compare
PP_2025 -0.8 -1.4 Exonuclease SbcD compare
PP_2311 -0.8 -2.2 Mg-dependent cytoplasmic DNase / RNase compare
PP_1124 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_3534 -0.8 -3.2 Transcriptional regulator, LysR family compare
PP_2883 -0.8 -0.8 conserved protein of unknown function compare
PP_4462 -0.8 -2.5 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_2880 -0.8 -1.2 Transcriptional regulator, TetR family compare
PP_1562 -0.8 -0.6 putative Phage terminase, small subunit compare
PP_0164 -0.8 -2.0 conserved protein of unknown function compare
PP_5027 -0.8 -0.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4131 -0.8 -1.9 NADH-quinone oxidoreductase subunit N compare
PP_4782 -0.8 -1.6 Phosphomethylpyrimidine kinase compare
PP_4005 -0.8 -1.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_3116 -0.8 -1.1 transcriptional repressor compare
PP_0195 -0.8 -0.7 conserved protein of unknown function compare
PP_2520 -0.8 -1.8 conserved protein of unknown function compare
PP_3563 -0.8 -1.2 conserved exported protein of unknown function compare
PP_5028 -0.8 -1.5 proline iminopeptidase compare
PP_2890 -0.8 -2.6 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_2320 -0.8 -4.3 conserved exported protein of unknown function compare
PP_3213 -0.8 -2.9 ABC transporter, periplasmic binding component-related protein compare
PP_5232 -0.8 -0.8 conserved protein of unknown function compare
PP_4879 -0.8 -1.9 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4263 -0.8 -1.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0972 -0.8 -1.5 UPF0213 protein PP_0972 compare
PP_1097 -0.8 -0.9 Methionine--tRNA ligase compare
PP_2302 -0.8 -1.6 DNA-binding, ATP-dependent protease compare
PP_1855 -0.8 -1.3 conserved exported protein of unknown function compare
PP_2593 -0.8 -1.8 Ferric siderophore ABC transporter, permease protein compare
PP_5628 -0.8 -1.6 conserved protein of unknown function compare
PP_1318 -0.8 -2.0 Cytochrome b compare
PP_5667 -0.8 -1.3 putative microcin B17-like-processing protein, McbC family compare
PP_1082 -0.8 -1.3 bacterioferritin compare
PP_1217 -0.7 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1224 -0.7 -2.9 periplasmic subunit of the TolQRA transport system compare
PP_0833 -0.7 -0.7 queuine tRNA-ribosyltransferase compare
PP_4258 -0.7 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4571 -0.7 -2.6 cysteine synthase A compare
PP_0938 -0.7 -3.3 conserved protein of unknown function compare
PP_0640 -0.7 -1.3 conserved protein of unknown function compare
PP_3880 -0.7 -0.8 conserved exported protein of unknown function compare
PP_3065 -0.7 -2.3 Pyocin R2_PP, tail formation compare
PP_3748 -0.7 -1.3 conserved hypothetical protein compare
PP_4406 -0.7 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control with 0.2x vogels experiments

For r2a control with 0.2x vogels Vogels_fungal_media across organisms