Experiment set38IT007 for Pseudomonas putida KT2440

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
PP_1237 -6.0 -3.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0856 -5.2 -8.0 conserved lipoprotein of unknown function compare
PP_4799 -5.2 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0846 -5.2 -2.9 DnaK-like molecular chaperone specific for IscU compare
PP_4693 -4.7 -11.4 RNA polymerase-binding transcription factor DksA compare
PP_4265 -4.3 -5.9 DNA-binding transcriptional dual regulator compare
PP_0719 -4.2 -2.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0691 -4.2 -4.9 Glutamate 5-kinase compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_4999 -3.8 -2.6 dihydroorotase-like protein compare
PP_2378 -3.2 -4.4 Fe/S biogenesis protein NfuA compare
PP_4700 -3.1 -4.7 pantothenate synthetase compare
PP_4724 -3.1 -4.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -3.1 -4.7 Carbamoyl-phosphate synthase large chain compare
PP_1664 -2.9 -5.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_4561 -2.9 -1.6 stress response protein compare
PP_4121 -2.6 -6.3 NADH-quinone oxidoreductase subunit C/D compare
PP_5475 -2.5 -2.0 conserved protein of unknown function compare
PP_4126 -2.4 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_4130 -2.4 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2568 -2.4 -1.7 Ring-cleaving dioxygenase compare
PP_3999 -2.3 -6.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1898 -2.2 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4943 -2.2 -3.1 putative Glycosyl transferase compare
PP_1216 -2.2 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4804 -2.1 -3.8 RlpA-like lipoprotein compare
PP_0393 -2.1 -3.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4902 -2.1 -2.6 Oligoribonuclease compare
PP_4120 -1.9 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_2336 -1.9 -3.5 aconitate hydratase 1 compare
PP_2337 -1.8 -2.3 aconitate isomerase compare
PP_5100 -1.8 -4.0 dITP/XTP pyrophosphatase compare
PP_3903 -1.8 -1.4 conserved protein of unknown function compare
PP_4936 -1.8 -5.9 O-antigen polymerase compare
PP_4342 -1.7 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_2322 -1.7 -6.2 Major outer membrane lipoprotein compare
PP_2631 -1.7 -1.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4122 -1.6 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0001 -1.6 -2.5 probable chromosome-partitioning protein compare
PP_4785 -1.6 -3.8 conserved exported protein of unknown function compare
PP_4938 -1.6 -6.8 putative Glycosyl transferase compare
PP_4262 -1.6 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0962 -1.6 -2.7 toluene-tolerance protein compare
PP_0833 -1.5 -1.4 queuine tRNA-ribosyltransferase compare
PP_4964 -1.5 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_2433 -1.5 -2.5 conserved protein of unknown function compare
PP_2371 -1.5 -2.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2088 -1.5 -2.4 RNA polymerase sigma factor SigX compare
PP_1232 -1.5 -6.1 conserved exported protein of unknown function compare
PP_5054 -1.5 -1.7 glutaredoxin 3 compare
PP_1002 -1.5 -4.1 arginine/ornithine antiporter compare
PP_4696 -1.4 -3.2 Nitrogen regulation protein NR(I) compare
PP_5216 -1.4 -1.9 exopolyphosphatase compare
PP_2328 -1.4 -3.1 Phosphoadenosine phosphosulfate reductase compare
PP_5225 -1.4 -1.6 frataxin compare
PP_3821 -1.3 -4.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4940 -1.3 -6.6 Putative glycosyltransferase compare
PP_0401 -1.3 -2.4 Ribosomal RNA small subunit methyltransferase A compare
PP_1779 -1.3 -4.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4008 -1.3 -4.2 ATP-dependent serine protease compare
PP_0339 -1.3 -3.1 Pyruvate dehydrogenase E1 component compare
PP_4560 -1.3 -3.5 putative Ribonuclease BN compare
PP_5095 -1.3 -1.2 pyrroline-5-carboxylate reductase compare
PP_1734 -1.3 -5.1 Probable septum site-determining protein MinC compare
PP_2299 -1.3 -3.5 Trigger factor compare
PP_1001 -1.2 -3.6 arginine deiminase compare
PP_1428 -1.2 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_5706 -1.2 -2.1 Sec translocation complex - SecG subunit compare
PP_1912 -1.2 -2.9 Phosphate acyltransferase compare
PP_4471 -1.2 -2.6 Magnesium transporter compare
PP_3899 -1.2 -1.1 conserved protein of unknown function, hicB family compare
PP_3245 -1.2 -1.7 conserved protein of unknown function compare
PP_1224 -1.2 -5.6 periplasmic subunit of the TolQRA transport system compare
PP_2000 -1.2 -2.0 amidophosphoribosyl transferase compare
PP_2121 -1.2 -1.5 putative Lipoprotein compare
PP_3241 -1.1 -1.2 conserved exported protein of unknown function compare
PP_5310 -1.1 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_1994 -1.1 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_2145 -1.1 -2.2 beta-N-acetylglucosaminidase compare
PP_2475 -1.1 -3.4 Transcriptional regulator, TetR family compare
PP_4546 -1.1 -2.5 ATP-dependent helicase HrpA compare
PP_3765 -1.1 -3.2 H-NS family protein MvaT compare
PP_5508 -1.1 -0.9 conserved protein of unknown function compare
PP_4004 -1.1 -2.2 DNA translocase FtsK compare
PP_2972 -1.1 -1.6 conserved protein of unknown function compare
PP_5008 -1.0 -1.5 Poly granule-associated protein compare
PP_4136 -1.0 -1.2 Transcriptional regulator, LuxR family compare
PP_2429 -1.0 -1.3 putative Membrane protein compare
PP_1217 -1.0 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1198 -1.0 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0164 -1.0 -2.7 conserved protein of unknown function compare
PP_3840 -1.0 -1.3 conserved protein of unknown function compare
PP_2793 -1.0 -1.7 Acyl-CoA dehydrogenase family protein compare
PP_2054 -1.0 -1.7 putative DNA-binding transcriptional regulator compare
PP_5580 -1.0 -1.3 protein of unknown function compare
PP_2402 -1.0 -1.3 putative Sensor histidine kinase compare
PP_4131 -1.0 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_1733 -1.0 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_1319 -1.0 -2.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1404 -0.9 -2.5 conserved protein of unknown function compare
PP_5090 -0.9 -2.3 putative cell division protein compare
PP_4942 -0.9 -1.7 conserved protein of unknown function compare
PP_3052 -0.9 -0.8 conserved protein of unknown function compare
PP_1987 -0.9 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_0852 -0.9 -2.3 Transcriptional regulator, Cro/CI family compare
PP_1185 -0.9 -3.2 Outer membrane protein H1 compare
PP_0949 -0.9 -3.0 putative ATP-binding protein UPF0042 compare
PP_3522 -0.9 -1.8 conserved protein of unknown function compare
PP_2341 -0.9 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2073 -0.9 -2.6 Acetyltransferase, GNAT family compare
PP_0855 -0.9 -1.0 conserved protein of unknown function compare
PP_0513 -0.9 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1096 -0.9 -1.2 putative electron transport complex protein compare
PP_4129 -0.9 -1.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5168 -0.9 -1.2 sulfate/thiosulfate import ATP-binding protein compare
PP_2858 -0.9 -2.0 conserved exported protein of unknown function compare
PP_3810 -0.9 -1.7 conserved protein of unknown function compare
PP_2499 -0.9 -0.7 conserved protein of unknown function compare
PP_1764 -0.9 -1.2 Phosphoglycolate phosphatase 2 compare
PP_2720 -0.8 -1.1 conserved protein of unknown function compare
PP_1876 -0.8 -3.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1906 -0.8 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_0123 -0.8 -4.6 DNA polymerase I, 5 compare
PP_2681 -0.8 -1.0 coenzyme PQQ synthesis protein D compare
PP_4058 -0.8 -4.3 1,4-alpha-glucan branching enzyme compare
PP_4941 -0.8 -3.6 conserved exported protein of unknown function compare
PP_5317 -0.8 -1.9 Probable chorismate pyruvate-lyase compare
PP_t10 -0.8 -1.1 tRNA-Pro compare
PP_4994 -0.8 -2.2 conserved protein of unknown function compare
PP_4909 -0.8 -3.7 phosphoserine phosphatase compare
PP_2923 -0.8 -2.1 conserved protein of unknown function compare
PP_5093 -0.8 -1.1 twitching motility protein compare
PP_3344 -0.8 -3.3 nickel ABC transporter permease subunit compare
PP_0999 -0.8 -2.0 carbamate kinase compare
PP_4317 -0.8 -1.6 conserved protein of unknown function compare
PP_1215 -0.8 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1787 -0.8 -2.3 conserved protein of unknown function compare
PP_5015 -0.8 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4892 -0.8 -2.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4875 -0.8 -2.6 conserved membrane protein of unknown function compare
PP_3040 -0.8 -1.3 Pyocin R2_PP, holin compare
PP_3424 -0.8 -2.4 Type II secretion pathway protein XcpS compare
PP_5309 -0.8 -3.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2611 -0.8 -1.8 membrane protein of unknown function compare
PP_3392 -0.8 -1.1 conserved protein of unknown function compare
PP_5183 -0.8 -3.1 glutamylpolyamine synthetase compare
PP_2908 -0.8 -1.6 DNA-binding transcriptional repressor compare
PP_5425 -0.8 -2.7 conserved protein of unknown function compare
PP_2878 -0.8 -0.7 conserved protein of unknown function compare
PP_1353 -0.7 -1.7 conserved membrane protein of unknown function compare
PP_5221 -0.7 -1.9 conserved protein of unknown function, UPF0178 family compare
PP_4254 -0.7 -0.8 conserved protein of unknown function compare
PP_0063 -0.7 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3757 -0.7 -1.3 Chemotaxis protein CheY compare
PP_3102 -0.7 -2.1 conserved protein of unknown function compare
PP_0963 -0.7 -1.4 putative BolA family protein compare
PP_2504 -0.7 -1.4 putative tautomerase K2 compare
PP_5241 -0.7 -1.0 DNA-binding response regulator, LuxR family compare
PP_3239 -0.7 -0.8 putative cointegrate resolution protein T Tn4652 compare
PP_0398 -0.7 -2.5 Thiosulfate sulfurtransferase GlpE compare
PP_1553 -0.7 -1.1 conserved protein of unknown function compare
PP_3284 -0.7 -2.3 enoyl-CoA hydratase-isomerase compare
PP_1000 -0.7 -1.9 ornithine carbamoyltransferase, catabolic compare
PP_1268 -0.7 -1.3 putative HtrA suppressor protein sohA compare
PP_4937 -0.7 -1.9 toluene tolerance protein compare
PP_2575 -0.7 -1.2 conserved exported protein of unknown function compare
PP_2187 -0.7 -2.2 Universal stress protein family compare
PP_3247 -0.7 -2.1 Transporter, bile acid/Na+ symporter family compare
PP_4393 -0.7 -2.6 putative chemotaxis protein compare
PP_2932 -0.7 -2.8 Amidase family protein compare
PP_3924 -0.7 -1.5 conserved protein of unknown function compare
PP_3803 -0.7 -2.3 putative Cation ABC transporter, permease protein compare
PP_4829 -0.7 -2.1 putative precorrin-3B synthase compare
PP_5500 -0.7 -0.9 protein of unknown function compare
PP_1778 -0.7 -2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_3474 -0.7 -2.2 putative Curli fiber protein CsgE compare
PP_0938 -0.7 -3.7 conserved protein of unknown function compare
PP_4261 -0.7 -1.9 cation-transporting P-type ATPase compare
PP_1480 -0.7 -1.7 conserved protein of unknown function compare
PP_2503 -0.7 -1.2 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_1054 -0.7 -1.3 Type II secretion pathway protein XcpZ compare
PP_1186 -0.7 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_0685 -0.6 -1.4 conserved protein of unknown function compare
PP_5422 -0.6 -1.4 hypothetical protein compare
PP_4133 -0.6 -1.5 Transcriptional regulator-related protein compare
PP_1986 -0.6 -0.9 3-isopropylmalate dehydratase small subunit compare
PP_1020 -0.6 -1.0 putative glucose-6-phosphate 1-epimerase compare
PP_1344 -0.6 -0.9 conserved protein of unknown function compare
PP_1187 -0.6 -3.2 sensor protein compare
PP_2500 -0.6 -2.3 conserved protein of unknown function compare
PP_1190 -0.6 -2.4 conserved protein of unknown function compare
PP_4611 -0.6 -2.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2723 -0.6 -1.6 Uncharacterized oxidoreductase YhdF compare
PP_5552 -0.6 -1.0 conserved protein of unknown function compare
PP_0502 -0.6 -1.8 conserved protein of unknown function compare
PP_2650 -0.6 -1.0 putative 4-hydroxybutyrate dehydrogenase compare
PP_3014 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1663 -0.6 -2.7 conserved exported protein of unknown function compare
PP_1435 -0.6 -1.9 DNA repair protein RecO compare
PP_3969 -0.6 -2.5 Response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control experiments