Experiment set38IT007 for Escherichia coli BW25113

LB

Group: lb
Media: LB
Culturing: Keio_ML9a, 24-well transparent microplate; Multitron, Aerobic, at 37 (C), shaken=700 rpm
By: Jill Babor on 25-Oct-19
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 9 genes in this experiment

SEED Subsystems

Subsystem	#Specific
CBSS-562.2.peg.5158 SK3 including	1
Chorismate Synthesis	1
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)	1
DNA-binding regulatory proteins, strays	1
De Novo Pyrimidine Synthesis	1
Lactose utilization	1
Pyrimidine utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Phenylalanine, tyrosine and tryptophan biosynthesis
• Biosynthesis of phenylpropanoids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
chorismate biosynthesis from 3-dehydroquinate	5	5	1
chorismate biosynthesis I	7	7	1
superpathway of L-tyrosine biosynthesis	10	10	1
superpathway of L-phenylalanine biosynthesis	10	10	1
chorismate biosynthesis II (archaea)	12	8	1
superpathway of L-tryptophan biosynthesis	13	13	1
superpathway of aromatic amino acid biosynthesis	18	18	1
superpathway of chorismate metabolism	59	54	1