Experiment set37IT024 for Pseudomonas putida KT2440

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
PP_1468 -5.4 -3.2 Tyrosine recombinase XerD compare
PP_4720 -5.1 -2.7 putative RNA binding protein compare
PP_5652 -5.1 -2.7 conserved protein of unknown function, phage origin compare
PP_0293 -4.9 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1215 -4.9 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_3105 -4.8 -2.5 conserved membrane protein of unknown function compare
PP_3505 -4.6 -2.4 conserved protein of unknown function compare
PP_0025 -4.5 -1.4 hypothetical protein compare
PP_1979 -4.4 -3.0 putative Hydrolase compare
PP_5717 -4.2 -2.5 conserved protein of unknown function compare
PP_4517 -4.2 -2.5 conserved protein of unknown function compare
PP_3447 -4.1 -1.3 conserved membrane protein of unknown function compare
PP_5017 -4.1 -1.3 Sec-independent protein translocase protein TatB compare
PP_1269 -4.0 -1.2 Universal stress protein family compare
PP_0801 -4.0 -1.2 conserved exported protein of unknown function compare
PP_1054 -3.9 -2.0 Type II secretion pathway protein XcpZ compare
PP_0250 -3.9 -2.8 heat shock protein Hsp15 involved in ribosome recycling compare
PP_3883 -3.8 -2.7 putative Phage holin compare
PP_1562 -3.7 -1.6 putative Phage terminase, small subunit compare
PP_5230 -3.6 -2.5 Tyrosine recombinase XerC compare
PP_3241 -3.5 -1.1 conserved exported protein of unknown function compare
PP_t12 -3.5 -1.1 tRNA-Thr compare
PP_5143 -3.4 -3.3 conserved membrane protein of unknown function compare
PP_1310 -3.3 -3.5 conserved hypothetical protein compare
PP_0585 -3.3 -2.4 putative metal-sensitive transcriptional regulator, MerR family compare
PP_5015 -3.3 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4266 -3.3 -4.1 Adenine phosphoribosyltransferase compare
PP_0125 -3.3 -3.6 putative cytochrome c-type protein compare
PP_1294 -3.2 -3.6 molybdopterin synthase large subunit compare
PP_4268 -3.2 -1.4 nucleoid-associated broad specificity regulator compare
PP_2773 -3.2 -1.4 conserved protein of unknown function compare
PP_4701 -3.1 -1.0 glucose-6-phosphate isomerase compare
PP_0735 -3.1 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_2499 -3.1 -1.3 conserved protein of unknown function compare
PP_1198 -3.1 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5546 -3.0 -2.2 conserved protein of unknown function compare
PP_3726 -3.0 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_3307 -3.0 -1.7 conserved protein of unknown function compare
PP_3014 -2.9 -3.1 conserved exported protein of unknown function compare
PP_5456 -2.9 -1.2 conserved protein of unknown function compare
PP_2720 -2.8 -1.2 conserved protein of unknown function compare
PP_3919 -2.8 -1.7 conserved protein of unknown function compare
PP_2402 -2.8 -1.9 putative Sensor histidine kinase compare
PP_5073 -2.8 -1.6 conserved exported protein of unknown function compare
PP_3766 -2.8 -2.3 Lactoylglutathione lyase compare
PP_2214 -2.7 -3.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5659 -2.7 -3.6 protein of unknown function compare
PP_3481 -2.7 -1.6 conserved exported protein of unknown function compare
PP_1528 -2.7 -1.2 conserved protein of unknown function compare
PP_4136 -2.6 -1.1 Transcriptional regulator, LuxR family compare
PP_1476 -2.6 -3.2 conserved protein of unknown function compare
PP_2900 -2.6 -1.8 conserved protein of unknown function compare
PP_4251 -2.6 -2.9 cytochrome c oxidase subunit, cbb3-type compare
PP_2269 -2.6 -2.6 putative N-acetylmuramoyl-L-alanine amidase compare
PP_5093 -2.6 -1.1 twitching motility protein compare
PP_0888 -2.6 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_4213 -2.6 -2.8 putative dipeptidase compare
PP_0642 -2.5 -2.9 conserved membrane protein of unknown function compare
PP_0092 -2.5 -2.9 putative lipoprotein compare
PP_4696 -2.5 -3.8 Nitrogen regulation protein NR(I) compare
PP_4227 -2.5 -1.4 conserved protein of unknown function compare
PP_0198 -2.5 -3.5 putative transporter compare
PP_1353 -2.5 -1.7 conserved membrane protein of unknown function compare
PP_5706 -2.4 -1.7 Sec translocation complex - SecG subunit compare
PP_4122 -2.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5705 -2.4 -1.9 protein of unknown function compare
PP_4797 -2.4 -1.8 conserved protein of unknown function compare
PP_0035 -2.4 -2.8 putative bactoprenol-linked glycose transferase compare
PP_4808 -2.3 -1.9 23S rRNA m3psi1915 methyltransferase compare
PP_1381 -2.3 -1.0 4-carboxymuconolactone decarboxylase compare
PP_2631 -2.3 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1466 -2.3 -2.6 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2073 -2.3 -2.2 Acetyltransferase, GNAT family compare
PP_4699 -2.3 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3217 -2.2 -6.1 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_1570 -2.2 -3.1 Head-tail adaptor compare
PP_2749 -2.2 -2.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4874 -2.2 -1.3 50S ribosomal protein L9 compare
PP_2137 -2.1 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_1733 -2.1 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0999 -2.1 -3.4 carbamate kinase compare
PP_1366 -2.1 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_5707 -2.1 -2.8 conserved protein of unknown function compare
PP_0846 -2.1 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_3376 -2.1 -3.5 putative phosphonate dehydrogenase compare
PP_4065 -2.1 -4.8 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_2633 -2.1 -1.2 conserved protein of unknown function compare
PP_4811 -2.1 -3.0 Gamma-glutamyl phosphate reductase compare
PP_0007 -2.1 -2.1 conserved hypothetical protein compare
PP_1255 -2.1 -1.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_2217 -2.1 -1.6 enoyl-CoA hydratase compare
PP_0673 -2.0 -1.5 conserved protein of unknown function compare
PP_5654 -2.0 -1.5 putative phosphotriesterase compare
PP_2044 -2.0 -1.4 conserved inner membrane protein of unknown function compare
PP_4379 -2.0 -2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1208 -2.0 -1.7 conserved protein of unknown function, SlyX family compare
PP_0640 -2.0 -3.0 conserved protein of unknown function compare
PP_4211 -2.0 -3.4 outer membrane pyoverdine efflux protein compare
PP_1076 -2.0 -4.4 aquaglyceroporin compare
PP_4253 -2.0 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4837 -2.0 -1.7 conserved protein of unknown function compare
PP_4058 -1.9 -6.4 1,4-alpha-glucan branching enzyme compare
PP_4004 -1.9 -3.4 DNA translocase FtsK compare
PP_5571 -1.9 -1.2 conserved protein of unknown function compare
PP_3712 -1.9 -3.2 conserved protein of unknown function compare
PP_5114 -1.9 -1.7 putative adenine methyltransferase compare
PP_2370 -1.9 -2.1 conserved protein of unknown function compare
PP_1679 -1.9 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3315 -1.9 -2.0 conserved membrane protein of unknown function compare
PP_0307 -1.9 -1.7 conserved exported protein of unknown function compare
PP_3926 -1.9 -1.1 short-chain dehydrogenase compare
PP_5327 -1.9 -1.3 putative phosphate ABC transporter, permease subunit compare
PP_5580 -1.9 -1.5 protein of unknown function compare
PP_1026 -1.9 -2.0 Peptidase, M23/M37 family compare
PP_3073 -1.9 -3.2 3-hydroxybutyrate dehydrogenase compare
PP_4981 -1.8 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_5549 -1.8 -2.6 conserved protein of unknown function compare
PP_2445 -1.8 -4.0 conserved membrane protein of unknown function compare
PP_0393 -1.8 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0269 -1.8 -3.5 putative Glutamate synthase, large subunit compare
PP_4943 -1.8 -1.6 putative Glycosyl transferase compare
PP_1097 -1.8 -1.1 Methionine--tRNA ligase compare
PP_3729 -1.8 -3.9 Periplasmic amino acid-binding protein-related protein compare
PP_3892 -1.8 -1.1 conserved protein of unknown function compare
PP_5505 -1.8 -1.6 conserved transmembrane protein of unknown function compare
PP_3353 -1.8 -2.8 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_3378 -1.8 -1.1 putative 2-ketogluconokinase compare
PP_1664 -1.8 -1.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_3064 -1.8 -1.8 Phage tail protein compare
PP_2795 -1.8 -2.9 AMP-binding domain protein compare
PP_2533 -1.7 -2.7 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_0998 -1.7 -3.7 conserved protein of unknown function compare
PP_0593 -1.7 -0.7 putative ribosome-binding factor compare
PP_2378 -1.7 -1.2 Fe/S biogenesis protein NfuA compare
PP_0303 -1.7 -2.8 dehydrocarnitine cleavage enzyme compare
PP_4982 -1.7 -2.5 putative cytochrome b561, iron-regulated compare
PP_4400 -1.7 -2.9 Bkd operon transcriptional regulator compare
PP_5695 -1.7 -2.8 conserved protein of unknown function compare
PP_1635 -1.7 -2.0 DNA-binding response regulator compare
PP_1731 -1.7 -2.4 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4669 -1.7 -1.5 OmpA family protein compare
PP_1677 -1.7 -2.9 Adenosyl-cobyric acid synthase compare
PP_3660 -1.7 -2.9 Transcriptional regulator, LysR family compare
PP_0001 -1.7 -1.0 probable chromosome-partitioning protein compare
PP_5594 -1.7 -1.6 conserved protein of unknown function compare
PP_1508 -1.7 -1.9 conserved protein of unknown function compare
PP_5294 -1.7 -3.7 Ribonuclease PH compare
PP_2745 -1.7 -1.6 Universal stress protein family compare
PP_3080 -1.7 -4.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0852 -1.6 -1.9 Transcriptional regulator, Cro/CI family compare
PP_4953 -1.6 -2.5 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_2475 -1.6 -3.0 Transcriptional regulator, TetR family compare
PP_5100 -1.6 -1.6 dITP/XTP pyrophosphatase compare
PP_3335 -1.6 -3.4 conserved protein of unknown function compare
PP_4215 -1.6 -3.5 pyoverdine biosynthesis related protein compare
PP_4941 -1.6 -4.7 conserved exported protein of unknown function compare
PP_4138 -1.6 -2.2 Chromate reductase compare
PP_5311 -1.6 -4.7 putative signal transduction protein compare
PP_4847 -1.6 -2.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_4470 -1.6 -2.1 putative transcriptional regulator (Arc domain-containing) compare
PP_4262 -1.6 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3531 -1.6 -1.8 conserved exported protein of unknown function compare
PP_0206 -1.6 -2.5 Ferredoxin, 4Fe-4S compare
PP_3037 -1.6 -1.1 C4-type zinc finger protein, DksA/TraR family compare
PP_3603 -1.6 -3.8 Transcriptional regulator, GntR family compare
PP_1001 -1.6 -2.1 arginine deiminase compare
PP_1122 -1.5 -1.2 OmpA family protein compare
PP_5430 -1.5 -1.7 protein of unknown function compare
PP_0758 -1.5 -2.7 conserved protein of unknown function compare
PP_4265 -1.5 -1.1 DNA-binding transcriptional dual regulator compare
PP_1012 -1.5 -2.4 DNA-binding response regulator compare
PP_0685 -1.5 -1.7 conserved protein of unknown function compare
PP_5572 -1.5 -1.9 protein of unknown function compare
PP_1734 -1.5 -2.9 Probable septum site-determining protein MinC compare
PP_3519 -1.5 -0.8 putative Lipoprotein compare
PP_5469 -1.5 -1.6 putative SAM-dependent methyltransferase compare
PP_1088 -1.5 -5.2 Argininosuccinate synthase compare
PP_1300 -1.5 -1.7 putative amino acid ABC transporter - ATP-binding subunit compare
PP_2995 -1.5 -3.0 putative DNA topology modulation kinase FlaR compare
PP_2622 -1.5 -2.1 conserved protein of unknown function compare
PP_1051 -1.5 -2.2 Type II secretion pathway protein XcpV compare
PP_4529 -1.5 -1.8 conserved protein of unknown function compare
PP_1909 -1.5 -3.4 putative septum formation protein compare
PP_2497 -1.4 -1.1 conserved protein of unknown function compare
PP_1709 -1.4 -1.8 Fumarylacetoacetate hydrolase family protein compare
PP_4261 -1.4 -3.6 cation-transporting P-type ATPase compare
PP_1994 -1.4 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_5039 -1.4 -1.1 conserved protein of unknown function compare
PP_4504 -1.4 -1.1 conserved exported protein of unknown function compare
PP_1002 -1.4 -2.7 arginine/ornithine antiporter compare
PP_0869 -1.4 -2.6 osmoprotectant ABC transporter permease subunit compare
PP_3380 -1.4 -2.7 2-ketogluconate utilization repressor compare
PP_3579 -1.4 -2.5 conserved membrane protein of unknown function compare
PP_0152 -1.4 -1.0 conserved exported protein of unknown function compare
PP_1216 -1.4 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3882 -1.4 -2.8 putative Phage terminase, small subunit compare
PP_3328 -1.4 -1.3 putative Ring-cleaving dioxygenase compare
PP_0292 -1.4 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3051 -1.4 -2.4 Pyocin R2_PP, tail spike protein compare
PP_2791 -1.4 -2.4 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare


Specific Phenotypes

For 1 genes in this experiment