Experiment set37IT022 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.3 -3.7 conserved membrane protein of unknown function compare
PP_1468 -4.5 -4.2 Tyrosine recombinase XerD compare
PP_4122 -2.9 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5621 -2.6 -2.0 protein of unknown function compare
PP_0888 -2.4 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1344 -2.3 -2.3 conserved protein of unknown function compare
PP_4004 -2.3 -5.8 DNA translocase FtsK compare
PP_2337 -2.2 -2.7 aconitate isomerase compare
PP_4696 -2.1 -4.4 Nitrogen regulation protein NR(I) compare
PP_4517 -2.1 -3.1 conserved protein of unknown function compare
PP_1215 -2.0 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4942 -2.0 -3.4 conserved protein of unknown function compare
PP_5717 -2.0 -2.9 conserved protein of unknown function compare
PP_5310 -2.0 -6.3 junction-specific ATP-dependent DNA helicase compare
PP_4482 -1.9 -3.1 Transcriptional regulator, AraC family compare
PP_1629 -1.9 -5.7 Protein RecA compare
PP_0856 -1.8 -1.8 conserved lipoprotein of unknown function compare
PP_3365 -1.8 -1.3 Acetolactate synthase compare
PP_3999 -1.8 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2379 -1.7 -4.5 putative cytochrome oxidase biogenesis protein compare
PP_2475 -1.7 -4.7 Transcriptional regulator, TetR family compare
PP_4804 -1.7 -2.6 RlpA-like lipoprotein compare
PP_4265 -1.7 -1.6 DNA-binding transcriptional dual regulator compare
PP_2907 -1.7 -3.4 DNA-binding response regulator compare
PP_1216 -1.7 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0852 -1.7 -4.0 Transcriptional regulator, Cro/CI family compare
PP_5706 -1.7 -2.3 Sec translocation complex - SecG subunit compare
PP_4620 -1.7 -6.2 Fumarylacetoacetase compare
PP_2217 -1.6 -2.9 enoyl-CoA hydratase compare
PP_1217 -1.6 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1198 -1.6 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2631 -1.6 -1.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2402 -1.6 -1.9 putative Sensor histidine kinase compare
PP_0691 -1.6 -1.1 Glutamate 5-kinase compare
PP_0872 -1.5 -5.2 Peptide chain release factor 3 compare
PP_2336 -1.5 -2.7 aconitate hydratase 1 compare
PP_0999 -1.5 -2.5 carbamate kinase compare
PP_3064 -1.5 -2.7 Phage tail protein compare
PP_5393 -1.5 -1.2 putative metal-binding chaperone compare
PP_5600 -1.4 -3.2 conserved protein of unknown function compare
PP_0846 -1.4 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_t29 -1.4 -2.1 tRNA-Ala compare
PP_0246 -1.4 -2.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_0293 -1.4 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5546 -1.4 -2.2 conserved protein of unknown function compare
PP_4058 -1.4 -6.8 1,4-alpha-glucan branching enzyme compare
PP_5027 -1.4 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_3312 -1.4 -1.9 putative Heat shock protein compare
PP_2371 -1.4 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_4880 -1.4 -6.7 exoribonuclease R compare
PP_0393 -1.3 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5486 -1.3 -2.2 conserved protein of unknown function compare
PP_5230 -1.3 -3.6 Tyrosine recombinase XerC compare
PP_1410 -1.3 -1.2 conserved protein of unknown function compare
PP_5267 -1.3 -2.0 putative cytochrome c5 compare
PP_2581 -1.3 -1.3 conserved protein of unknown function compare
PP_4722 -1.3 -3.9 Transcription elongation factor GreA compare
PP_5575 -1.3 -1.8 conserved protein of unknown function compare
PP_3447 -1.3 -1.2 conserved membrane protein of unknown function compare
PP_3307 -1.3 -1.9 conserved protein of unknown function compare
PP_2633 -1.3 -1.2 conserved protein of unknown function compare
PP_0401 -1.3 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_5095 -1.3 -0.9 pyrroline-5-carboxylate reductase compare
PP_4379 -1.2 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5327 -1.2 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_5580 -1.2 -1.6 protein of unknown function compare
PP_4593 -1.2 -1.5 conserved protein of unknown function compare
PP_0484 -1.2 -4.1 transporter of an unknown substrate compare
PP_4981 -1.2 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_1729 -1.2 -1.6 conserved protein of unknown function compare
PP_4591 -1.2 -3.5 Ribonuclease D compare
PP_3971 -1.2 -1.2 conserved protein of unknown function compare
PP_3797 -1.1 -3.9 conserved membrane protein of unknown function compare
PP_1556 -1.1 -2.3 conserved protein of unknown function compare
PP_1353 -1.1 -2.3 conserved membrane protein of unknown function compare
PP_0065 -1.1 -2.4 NAD-binding component of TrK potassium transporter compare
PP_1550 -1.1 -2.7 Transcriptional regulator, Cro/CI family compare
PP_4131 -1.1 -2.6 NADH-quinone oxidoreductase subunit N compare
PP_3803 -1.1 -2.5 putative Cation ABC transporter, permease protein compare
PP_5093 -1.1 -1.2 twitching motility protein compare
PP_1021 -1.1 -3.6 DNA-binding transcriptional regulator compare
PP_3899 -1.1 -1.9 conserved protein of unknown function, hicB family compare
PP_2345 -1.1 -1.6 conserved exported protein of unknown function compare
PP_0566 -1.1 -0.9 translation-related factor compare
PP_1088 -1.0 -6.5 Argininosuccinate synthase compare
PP_2348 -1.0 -2.6 Sensor histidine kinase compare
PP_0323 -1.0 -4.2 sarcosine oxidase subunit beta compare
PP_1328 -1.0 -1.6 Protein MraZ compare
PP_0173 -1.0 -4.1 putative transcriptional factor-related protein compare
PP_4944 -1.0 -1.7 Carbamoyltransferase compare
PP_3014 -1.0 -2.3 conserved exported protein of unknown function compare
PP_1862 -1.0 -1.7 conserved membrane protein of unknown function compare
PP_0184 -1.0 -3.4 Argininosuccinate lyase compare
PP_2764 -1.0 -2.6 FMN reductase (NADPH) compare
PP_2334 -1.0 -3.3 2-methylisocitrate lyase compare
PP_4964 -1.0 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4799 -1.0 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5702 -1.0 -2.7 conserved protein of unknown function compare
PP_2378 -1.0 -1.6 Fe/S biogenesis protein NfuA compare
PP_0195 -1.0 -1.2 conserved protein of unknown function compare
PP_0962 -1.0 -1.8 toluene-tolerance protein compare
PP_1255 -0.9 -1.8 putative cis-4-hydroxy-D-proline oxidase compare
PP_2681 -0.9 -0.9 coenzyme PQQ synthesis protein D compare
PP_5610 -0.9 -1.1 protein of unknown function compare
PP_2322 -0.9 -2.7 Major outer membrane lipoprotein compare
PP_2932 -0.9 -3.5 Amidase family protein compare
PP_0214 -0.9 -4.0 4-aminobutyrate aminotransferase compare
PP_4479 -0.9 -2.6 arginine N-succinyltransferase, subunit beta compare
PP_0002 -0.9 -4.1 probable chromosome partition protein compare
PP_4874 -0.9 -1.0 50S ribosomal protein L9 compare
PP_5725 -0.9 -3.1 protein of unknown function compare
PP_4124 -0.9 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_3332 -0.9 -2.5 putative cytochrome c-type protein compare
PP_4008 -0.9 -2.9 ATP-dependent serine protease compare
PP_4217 -0.9 -7.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0801 -0.9 -0.9 conserved exported protein of unknown function compare
PP_2328 -0.9 -2.7 Phosphoadenosine phosphosulfate reductase compare
PP_2274 -0.9 -1.8 conserved protein of unknown function compare
PP_4271 -0.9 -0.7 conserved protein of unknown function compare
PP_4859 -0.9 -2.3 Transcriptional regulator, TetR family compare
PP_4262 -0.9 -1.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0266 -0.9 -4.1 Agmatine deiminase compare
PP_5579 -0.9 -3.0 conserved protein of unknown function compare
PP_5083 -0.9 -1.6 putative Type IV pili biogenesis protein PilM compare
PP_4225 -0.9 -2.8 two component system DNA-binding transcriptional activator QseB compare
PP_5499 -0.9 -1.8 conserved protein of unknown function compare
PP_4213 -0.9 -1.7 putative dipeptidase compare
PP_0114 -0.9 -3.0 methionine ABC transporter ATP-binding protein compare
PP_1381 -0.9 -0.9 4-carboxymuconolactone decarboxylase compare
PP_4211 -0.9 -3.6 outer membrane pyoverdine efflux protein compare
PP_0887 -0.9 -3.6 Sensor histidine kinase compare
PP_t11 -0.9 -1.7 tRNA-Lys compare
PP_3792 -0.9 -1.9 conserved protein of unknown function compare
PP_4244 -0.9 -3.9 alternative sigma factor compare
PP_3640 -0.9 -1.8 Transcriptional regulator, AraC family compare
PP_4210 -0.9 -5.0 pyoverdine efflux carrier and ATP binding protein compare
PP_0989 -0.8 -1.4 glycine cleavage system H protein 1 compare
PP_4816 -0.8 -3.5 conserved protein of unknown function compare
PP_3333 -0.8 -2.5 conserved protein of unknown function compare
PP_4214 -0.8 -1.7 pyoverdine biosynthesis related protein compare
PP_1482 -0.8 -2.6 polyamine ABC transporter, permease protein compare
PP_4943 -0.8 -1.5 putative Glycosyl transferase compare
PP_4993 -0.8 -2.5 Glutathione synthetase compare
PP_4045 -0.8 -1.8 conserved protein of unknown function compare
PP_4836 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4402 -0.8 -4.3 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_3052 -0.8 -0.9 conserved protein of unknown function compare
PP_3336 -0.8 -2.8 conserved protein of unknown function compare
PP_1366 -0.8 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_0313 -0.8 -1.1 putative electron transfer flavoprotein beta subunit compare
PP_0440 -0.8 -1.4 Elongation factor Tu-A compare
PP_1004 -0.8 -1.7 conserved protein of unknown function compare
PP_0939 -0.8 -3.1 Carbon-nitrogen hydrolase family protein compare
PP_2142 -0.8 -1.8 Cell division inhibitor SulA compare
PP_4233 -0.8 -2.6 putative Oxidoreductase, small subunit compare
PP_3164 -0.8 -2.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2110 -0.8 -2.0 putative ribosomal large subunit pseudouridine synthase compare
PP_4941 -0.8 -3.3 conserved exported protein of unknown function compare
PP_4129 -0.8 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4555 -0.8 -2.2 conserved protein of unknown function compare
PP_4308 -0.8 -1.5 Transcriptional regulator, AsnC family compare
PP_1812 -0.8 -1.6 conserved protein of unknown function compare
PP_3924 -0.8 -1.7 conserved protein of unknown function compare
PP_4824 -0.8 -3.0 Sensor histidine kinase/response regulator compare
PP_4695 -0.8 -4.3 Sensory box histidine kinase compare
PP_4067 -0.8 -3.5 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2313 -0.8 -0.9 conserved membrane protein of unknown function compare
PP_0949 -0.8 -2.9 putative ATP-binding protein UPF0042 compare
PP_0910 -0.8 -3.1 conserved exported protein of unknown function compare
PP_2214 -0.8 -2.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0642 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_5295 -0.8 -1.2 conserved protein of unknown function compare
PP_4766 -0.7 -2.6 ATP-dependent RNA helicase compare
PP_3916 -0.7 -1.8 conserved protein of unknown function compare
PP_1498 -0.7 -3.6 putative Lipoprotein compare
PP_3874 -0.7 -1.8 conserved protein of unknown function compare
PP_4403 -0.7 -3.1 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_2442 -0.7 -1.6 conserved protein of unknown function, DUF480 family compare
PP_4545 -0.7 -2.7 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_0048 -0.7 -0.8 conserved protein of unknown function compare
PP_3942 -0.7 -2.4 maleate isomerase compare
PP_1000 -0.7 -2.1 ornithine carbamoyltransferase, catabolic compare
PP_5628 -0.7 -1.8 conserved protein of unknown function compare
PP_3024 -0.7 -2.4 conserved protein of unknown function compare
PP_3380 -0.7 -1.6 2-ketogluconate utilization repressor compare
PP_2429 -0.7 -0.9 putative Membrane protein compare
PP_1892 -0.7 -1.2 conserved protein of unknown function compare
PP_1214 -0.7 -1.4 putative transcriptional regulatory protein compare
PP_2122 -0.7 -1.7 molybdenum cofactor biosynthesis protein B compare
PP_4236 -0.7 -2.1 putative Thiol:disulfide interchange protein dsbE compare
PP_3840 -0.7 -0.9 conserved protein of unknown function compare
PP_4833 -0.7 -2.0 SURF1 domain protein compare
PP_4625 -0.7 -1.9 anti-holin regulator of holin CidA compare
PP_2159 -0.7 -2.4 Copper-binding protein, plastocyanin/azurin family compare
PP_3505 -0.7 -1.5 conserved protein of unknown function compare
PP_2106 -0.7 -2.0 putative Ammonium transporter compare
PP_3804 -0.7 -2.7 conserved exported protein of unknown function compare
PP_4913 -0.7 -2.1 conserved protein of unknown function compare
PP_4994 -0.7 -1.6 conserved protein of unknown function compare
PP_4564 -0.7 -2.0 putative Lipoprotein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments