Experiment set37IT022 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +8.0 39.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +7.6 30.1 Sensor protein GacS compare
PP_4356 +2.4 10.1 Flagellar protein FliO compare
PP_2889 +2.3 6.8 putative Transmembrane regulator PrtR compare
PP_4383 +2.0 4.7 Flagellar P-ring protein compare
PP_4384 +2.0 12.9 Flagellar L-ring protein compare
PP_4369 +2.0 11.2 Flagellar M-ring protein compare
PP_4365 +2.0 7.1 Flagellar protein FliJ compare
PP_4390 +2.0 12.3 flagellar basal-body rod protein FlgC compare
PP_4370 +2.0 5.3 Flagellar hook-basal body complex protein FliE compare
PP_4366 +2.0 15.0 flagellum-specific ATP synthase compare
PP_4386 +2.0 8.8 flagellar basal-body rod protein FlgF compare
PP_2000 +2.0 1.8 amidophosphoribosyl transferase compare
PP_1655 +2.0 6.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4344 +1.9 13.4 flagellar export pore protein compare
PP_4381 +1.9 14.9 Flagellar hook-associated protein FlgK compare
PP_4352 +1.9 12.2 flagellin export apparatus, substrate specificity protein compare
PP_4353 +1.8 11.2 Flagellar biosynthetic protein fliR compare
PP_4354 +1.8 7.8 flagellar export apparatus subunit compare
PP_4341 +1.8 9.7 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4368 +1.8 9.4 flagellar motor switch protein compare
PP_4385 +1.8 9.4 flagellar basal-body rod protein FlgG compare
PP_4382 +1.8 10.2 Peptidoglycan hydrolase FlgJ compare
PP_4391 +1.7 8.1 flagellar basal-body rod protein FlgB compare
PP_4367 +1.7 4.3 Flagellar assembly protein FliH compare
PP_4394 +1.7 6.1 flagella basal body P-ring formation protein compare
PP_4388 +1.7 12.9 Flagellar hook protein FlgE compare
PP_4378 +1.7 13.5 flagellin, filament structural protein compare
PP_4361 +1.6 7.4 Flagellar hook-length control protein FliK compare
PP_4359 +1.6 8.1 Flagellar protein FliL compare
PP_4380 +1.6 12.7 Flagellar hook-associated protein FlgL compare
PP_3409 +1.6 3.7 putative Cobalamin biosynthesis protein cobE compare
PP_4376 +1.6 12.2 flagellar filament capping protein compare
PP_4375 +1.5 9.4 flagellar chaperone, inhibits premature FliC assembly compare
PP_4373 +1.5 10.7 Transcriptional regulator FleQ compare
PP_1656 +1.5 6.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_4358 +1.5 7.3 flagellar synthesis, switching and energizing component compare
PP_4337 +1.5 9.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0574 +1.5 10.7 DNA-binding response regulator, LuxR family compare
PP_1623 +1.3 9.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1512 +1.3 4.3 conserved protein of unknown function compare
PP_4355 +1.3 4.6 flagellar export apparatus subunit compare
PP_3398 +1.3 3.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4389 +1.2 6.4 Flagellar basal-body rod modification protein FlgD compare
PP_2416 +1.2 4.2 putative Iron ABC transporter, ATP-binding protein compare
PP_5051 +1.2 1.2 conserved protein of unknown function compare
PP_4171 +1.2 7.1 conserved exported protein of unknown function compare
PP_2029 +1.1 2.9 von Willebrand factor type A domain protein compare
PP_1036 +1.1 7.3 membrane-bound lytic murein transglycosylase F compare
PP_4905 +1.1 4.5 Flagellar motor rotation protein compare
PP_t12 +1.1 1.7 tRNA-Thr compare
PP_5109 +1.1 5.2 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_4904 +1.1 5.8 Flagellar motor rotation protein compare
PP_2107 +1.1 2.1 conserved protein of unknown function compare
PP_4372 +1.1 3.8 Sensory box histidine kinase FleS compare
PP_4336 +1.0 5.3 flagellar motor rotation protein compare
PP_3946 +1.0 1.0 HTH-type transcriptional repressor NicR compare
PP_2773 +1.0 1.7 conserved protein of unknown function compare
PP_5597 +1.0 1.7 conserved protein of unknown function compare
PP_4396 +1.0 3.7 conserved protein of unknown function compare
PP_4364 +1.0 4.4 putative Anti-sigma F factor antagonist compare
PP_4724 +1.0 0.9 Carbamoyl-phosphate synthase small chain compare
PP_4335 +1.0 6.9 flagellar motor protein compare
PP_5644 +1.0 1.8 conserved membrane protein of unknown function compare
PP_2462 +1.0 3.1 conserved protein of unknown function compare
PP_1087 +1.0 4.7 Outer membrane protein, OmpA family compare
PP_2388 +1.0 2.2 Transporter, LysE family compare
PP_0719 +1.0 1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4642 +0.9 1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_2765 +0.9 2.0 putative Sulfonate monooxygenase MsuD compare
PP_4371 +0.9 5.3 two component system AtoC DNA-binding transcriptional activator compare
PP_5232 +0.9 1.2 conserved protein of unknown function compare
PP_5145 +0.9 7.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2365 +0.9 3.6 Transcriptional regulator, AraC family compare
PP_0948 +0.9 1.7 Phosphocarrier protein HPr compare
PP_4343 +0.9 3.2 Flagellar biosynthesis protein FlhF compare
PP_5519 +0.9 2.0 conserved protein of unknown function of phage origin compare
PP_1176 +0.9 2.2 conserved protein of unknown function compare
PP_3058 +0.9 2.9 conserved protein of unknown function compare
PP_1110 +0.9 4.1 serine acetyltransferase compare
PP_2417 +0.9 3.0 putative Iron ABC transporter, permease protein compare
PP_1575 +0.9 1.8 conserved protein of unknown function compare
PP_1876 +0.9 3.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0001 +0.8 1.5 probable chromosome-partitioning protein compare
PP_0355 +0.8 1.8 Response regulator compare
PP_2027 +0.8 3.5 conserved exported protein of unknown function compare
PP_1204 +0.8 3.7 putative Lipoprotein compare
PP_1097 +0.8 0.9 Methionine--tRNA ligase compare
PP_0424 +0.8 3.5 DNA-binding transcriptional dual regulator compare
PP_0914 +0.8 4.4 GGDEF domain protein compare
PP_4073 +0.8 1.1 conserved exported protein of unknown function compare
PP_1493 +0.8 2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2028 +0.8 2.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2390 +0.8 3.4 Transcriptional regulator, LysR family compare
PP_2972 +0.8 1.2 conserved protein of unknown function compare
PP_4009 +0.8 3.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4710 +0.8 4.5 tRNA pseudouridine 55 synthase compare
PP_1699 +0.8 2.7 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_1326 +0.8 1.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4531 +0.8 1.6 conserved exported protein of unknown function compare
PP_2030 +0.8 2.9 conserved protein of unknown function compare
PP_0587 +0.7 4.0 conserved exported protein of unknown function compare
PP_4094 +0.7 1.7 conserved protein of unknown function compare
PP_3258 +0.7 2.3 conserved protein of unknown function compare
PP_4331 +0.7 2.4 conserved protein of unknown function compare
PP_4848 +0.7 1.9 Curved DNA-binding protein compare
PP_1473 +0.7 2.8 conserved protein of unknown function compare
PP_3765 +0.7 2.0 H-NS family protein MvaT compare
PP_4910 +0.7 2.5 conserved protein of unknown function compare
PP_3002 +0.7 1.1 shikimate dehydrogenase-related enzyme compare
PP_2389 +0.7 2.9 conserved protein of unknown function compare
PP_3241 +0.7 0.9 conserved exported protein of unknown function compare
PP_3880 +0.7 1.1 conserved exported protein of unknown function compare
PP_2499 +0.7 0.9 conserved protein of unknown function compare
PP_1404 +0.7 1.3 conserved protein of unknown function compare
PP_5057 +0.7 3.8 Peptidase, M23/M37 family compare
PP_5084 +0.7 4.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2231 +0.7 1.8 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5058 +0.7 3.1 Carboxy-terminal-processing protease compare
PP_2101 +0.7 1.9 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_0339 +0.7 1.2 Pyruvate dehydrogenase E1 component compare
PP_t10 +0.7 1.5 tRNA-Pro compare
PP_1999 +0.7 1.3 membrane protein required for colicin V production compare
PP_4199 +0.7 0.9 putative Lipoprotein compare
PP_4253 +0.6 1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_1716 +0.6 1.9 Transcriptional regulator, Cro/CI family compare
PP_4332 +0.6 1.9 Chemotaxis protein CheW compare
PP_1236 +0.6 2.5 putative Glycine cleavage system transcriptional repressor compare
PP_3539 +0.6 1.0 putative Transcriptional regulator compare
PP_1970 +0.6 2.7 putative Lipoprotein compare
PP_4377 +0.6 1.9 putative Flagellin FlaG compare
PP_4339 +0.6 2.5 Protein phosphatase CheZ compare
PP_5739 +0.6 2.2 protein of unknown function compare
PP_2032 +0.6 2.3 putative ATPase compare
PP_0775 +0.6 0.9 conserved protein of unknown function compare
PP_2848 +0.6 1.4 urease accessory protein compare
PP_2883 +0.6 0.9 conserved protein of unknown function compare
PP_2999 +0.6 1.1 Glyoxalase family protein compare
PP_4159 +0.6 2.2 Potassium-transporting ATPase C chain compare
PP_0869 +0.6 1.4 osmoprotectant ABC transporter permease subunit compare
PP_3530 +0.6 1.9 putative S-ureidoglycine aminohydrolase compare
PP_2370 +0.6 1.2 conserved protein of unknown function compare
PP_4168 +0.6 2.4 conserved protein of unknown function compare
PP_3508 +0.6 1.9 Protein CobW compare
PP_4098 +0.6 0.8 UvrABC system protein C compare
PP_2350 +0.6 3.2 LysR family transcriptional regulator compare
PP_1193 +0.6 1.7 conserved membrane protein of unknown function compare
PP_1516 +0.6 2.4 RND membrane fusion protein compare
PP_2121 +0.6 1.1 putative Lipoprotein compare
PP_1833 +0.6 1.3 conserved protein of unknown function compare
PP_3876 +0.6 0.8 conserved protein of unknown function compare
PP_3234 +0.6 1.5 Heat shock protein, HSP20 family compare
PP_4069 +0.5 1.1 conserved protein of unknown function compare
PP_2280 +0.5 0.8 conserved protein of unknown function compare
PP_0824 +0.5 2.2 phosphonate transport system-binding protein compare
PP_0126 +0.5 1.9 Cytochrome c4 compare
PP_3346 +0.5 1.8 Nickel transporter ATP-binding protein compare
PP_1109 +0.5 4.5 Transcriptional regulator, GntR family compare
PP_5473 +0.5 1.4 putative transcriptional regulator, LuxR family compare
PP_0081 +0.5 2.1 conserved protein of unknown function compare
PP_0136 +0.5 2.5 conserved exported protein of unknown function compare
PP_0022 +0.5 0.7 hypothetical protein compare
PP_5654 +0.5 1.3 putative phosphotriesterase compare
PP_4173 +0.5 3.4 Sensor histidine kinase/response regulator compare
PP_3831 +0.5 2.7 conserved protein of unknown function compare
PP_2547 +0.5 1.0 Transcriptional regulator, LysR family compare
PP_0945 +0.5 1.2 conserved protein of unknown function compare
PP_1026 +0.5 1.0 Peptidase, M23/M37 family compare
PP_3198 +0.5 0.7 Ferredoxin, 2Fe-2S compare
PP_3926 +0.5 1.0 short-chain dehydrogenase compare
PP_2118 +0.5 0.9 conserved protein of unknown function compare
PP_2550 +0.5 1.0 putative transcriptional regulatory protein compare
PP_1044 +0.5 1.9 Lipoprotein UxpA compare
PP_3378 +0.5 1.2 putative 2-ketogluconokinase compare
PP_1265 +0.5 1.4 conserved protein of unknown function compare
PP_5704 +0.5 1.4 conserved protein of unknown function compare
PP_2256 +0.5 2.6 Transcriptional regulator, Cro/CI family compare
PP_3239 +0.5 1.4 putative cointegrate resolution protein T Tn4652 compare
PP_0874 +0.5 0.9 conserved protein of unknown function compare
PP_1289 +0.5 2.8 conserved protein of unknown function, DUF328 family compare
PP_4139 +0.5 1.6 conserved protein of unknown function compare
PP_1789 +0.5 2.4 Hydrolase, haloacid dehalogenase-like family compare
PP_0262 +0.5 1.5 conserved protein of unknown function compare
PP_1690 +0.5 1.4 conserved protein of unknown function compare
PP_3477 +0.5 1.9 Putative secretion type II protein related to protein G compare
PP_2665 +0.5 1.7 Glycerol metabolism activator compare
PP_5240 +0.5 1.3 Response regulator compare
PP_1112 +0.5 3.0 conserved membrane protein of unknown function compare
PP_2619 +0.5 1.6 FHA domain protein compare
PP_2777 +0.5 1.5 putative Acyl carrier protein compare
PP_0837 +0.5 2.5 putative regulator of flagellation compare
PP_0821 +0.5 1.3 conserved exported protein of unknown function compare
PP_4333 +0.5 2.2 CheW domain protein compare
PP_1225 +0.5 2.0 7-carboxy-7-deazaguanine synthase compare
PP_0116 +0.5 1.9 putative lipoprotein compare
PP_0833 +0.5 0.7 queuine tRNA-ribosyltransferase compare
PP_3579 +0.5 2.7 conserved membrane protein of unknown function compare
PP_5658 +0.5 0.9 protein of unknown function compare
PP_1706 +0.5 2.1 Nitrite reductase compare
PP_1522 +0.5 1.6 major cold shock protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments