Experiment set37IT021 for Pseudomonas putida KT2440

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.2 -3.6 conserved membrane protein of unknown function compare
PP_5717 -3.6 -3.5 conserved protein of unknown function compare
PP_4004 -3.5 -6.9 DNA translocase FtsK compare
PP_3726 -3.1 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_1468 -3.0 -3.7 Tyrosine recombinase XerD compare
PP_0888 -3.0 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_3902 -2.6 -3.6 conserved protein of unknown function compare
PP_2402 -2.5 -2.4 putative Sensor histidine kinase compare
PP_1198 -2.4 -3.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2403 -2.4 -1.9 Chemotaxis protein CheY compare
PP_4720 -2.2 -3.4 putative RNA binding protein compare
PP_4214 -2.2 -3.9 pyoverdine biosynthesis related protein compare
PP_2337 -2.2 -2.5 aconitate isomerase compare
PP_5230 -2.0 -3.9 Tyrosine recombinase XerC compare
PP_1216 -2.0 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1344 -2.0 -1.9 conserved protein of unknown function compare
PP_0401 -1.9 -3.7 Ribosomal RNA small subunit methyltransferase A compare
PP_5486 -1.9 -2.5 conserved protein of unknown function compare
PP_0319 -1.9 -1.9 conserved protein of unknown function compare
PP_5093 -1.9 -1.6 twitching motility protein compare
PP_3519 -1.9 -1.4 putative Lipoprotein compare
PP_5073 -1.9 -2.0 conserved exported protein of unknown function compare
PP_2217 -1.9 -2.5 enoyl-CoA hydratase compare
PP_4265 -1.9 -1.3 DNA-binding transcriptional dual regulator compare
PP_2044 -1.9 -1.9 conserved inner membrane protein of unknown function compare
PP_2336 -1.8 -2.2 aconitate hydratase 1 compare
PP_4058 -1.8 -9.1 1,4-alpha-glucan branching enzyme compare
PP_0781 -1.8 -3.6 conserved protein of unknown function compare
PP_5575 -1.8 -1.8 conserved protein of unknown function compare
PP_1217 -1.8 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0999 -1.7 -3.5 carbamate kinase compare
PP_3892 -1.7 -1.6 conserved protein of unknown function compare
PP_4701 -1.7 -1.0 glucose-6-phosphate isomerase compare
PP_0872 -1.6 -5.0 Peptide chain release factor 3 compare
PP_1404 -1.6 -2.3 conserved protein of unknown function compare
PP_2720 -1.6 -1.5 conserved protein of unknown function compare
PP_4555 -1.6 -2.7 conserved protein of unknown function compare
PP_0856 -1.6 -1.9 conserved lipoprotein of unknown function compare
PP_3999 -1.6 -4.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0025 -1.6 -1.5 hypothetical protein compare
PP_1523 -1.6 -3.3 conserved protein of unknown function compare
PP_0236 -1.6 -2.6 NAD(P)H-dependent FMN reductase subunit compare
PP_4199 -1.6 -1.1 putative Lipoprotein compare
PP_0852 -1.5 -4.0 Transcriptional regulator, Cro/CI family compare
PP_5310 -1.5 -5.9 junction-specific ATP-dependent DNA helicase compare
PP_4620 -1.5 -5.7 Fumarylacetoacetase compare
PP_1994 -1.5 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_4696 -1.5 -3.8 Nitrogen regulation protein NR(I) compare
PP_1310 -1.5 -1.9 conserved hypothetical protein compare
PP_1729 -1.5 -1.9 conserved protein of unknown function compare
PP_0691 -1.5 -1.0 Glutamate 5-kinase compare
PP_4837 -1.5 -2.0 conserved protein of unknown function compare
PP_2215 -1.5 -2.6 acetyl-CoA acetyltransferase compare
PP_0393 -1.4 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_t12 -1.4 -1.0 tRNA-Thr compare
PP_0313 -1.3 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_4227 -1.3 -1.4 conserved protein of unknown function compare
PP_2378 -1.3 -1.8 Fe/S biogenesis protein NfuA compare
PP_2379 -1.3 -3.0 putative cytochrome oxidase biogenesis protein compare
PP_4066 -1.3 -2.1 methylglutaconyl-CoA hydratase compare
PP_4880 -1.3 -6.3 exoribonuclease R compare
PP_2302 -1.3 -3.9 DNA-binding, ATP-dependent protease compare
PP_2152 -1.3 -1.5 glycerophosphoryl diester phosphodiesterase compare
PP_2371 -1.3 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1353 -1.3 -2.4 conserved membrane protein of unknown function compare
PP_3946 -1.3 -1.3 HTH-type transcriptional repressor NicR compare
PP_5100 -1.2 -3.0 dITP/XTP pyrophosphatase compare
PP_4722 -1.2 -3.6 Transcription elongation factor GreA compare
PP_4329 -1.2 -2.3 FlhB domain protein compare
PP_5705 -1.2 -2.0 protein of unknown function compare
PP_4120 -1.2 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_4532 -1.2 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5390 -1.2 -2.9 conserved hypothetical protein compare
PP_5327 -1.2 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_2848 -1.2 -2.4 urease accessory protein compare
PP_4131 -1.2 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_5SB -1.2 -2.2 5S ribosomal RNA compare
PP_1739 -1.2 -3.1 conserved membrane protein of unknown function compare
PP_0184 -1.2 -3.5 Argininosuccinate lyase compare
PP_0173 -1.2 -4.8 putative transcriptional factor-related protein compare
PP_3245 -1.2 -1.3 conserved protein of unknown function compare
PP_2345 -1.2 -3.0 conserved exported protein of unknown function compare
PP_0484 -1.2 -3.8 transporter of an unknown substrate compare
PP_1824 -1.2 -1.4 Smr domain protein compare
PP_5487 -1.2 -3.0 conserved protein of unknown function compare
PP_3339 -1.1 -3.0 conserved exported protein of unknown function compare
PP_4069 -1.1 -2.3 conserved protein of unknown function compare
PP_3037 -1.1 -1.6 C4-type zinc finger protein, DksA/TraR family compare
PP_1508 -1.1 -2.2 conserved protein of unknown function compare
PP_1099 -1.1 -2.0 Cold shock protein CapB compare
PP_4211 -1.1 -3.9 outer membrane pyoverdine efflux protein compare
PP_2762 -1.1 -3.7 acyl-CoA dehydrogenase/oxidase family protein compare
PP_5027 -1.1 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5317 -1.1 -2.9 Probable chorismate pyruvate-lyase compare
PP_2729 -1.1 -2.2 conserved protein of unknown function compare
PP_4964 -1.1 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1489 -1.1 -1.9 CheW domain protein compare
PP_1128 -1.1 -2.8 OmpA family protein compare
PP_0246 -1.1 -1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_1439 -1.1 -1.5 conserved exported protein of unknown function compare
PP_t29 -1.1 -1.3 tRNA-Ala compare
PP_1673 -1.1 -3.6 cobyrinate a,c-diamide synthase compare
PP_1731 -1.0 -2.3 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4268 -1.0 -1.1 nucleoid-associated broad specificity regulator compare
PP_2118 -1.0 -1.6 conserved protein of unknown function compare
PP_5295 -1.0 -1.4 conserved protein of unknown function compare
PP_3332 -1.0 -2.1 putative cytochrome c-type protein compare
PP_1232 -1.0 -3.4 conserved exported protein of unknown function compare
PP_3580 -1.0 -1.4 conserved protein of unknown function compare
PP_4534 -1.0 -2.3 conserved protein of unknown function compare
PP_3924 -1.0 -1.7 conserved protein of unknown function compare
PP_2575 -1.0 -1.4 conserved exported protein of unknown function compare
PP_1783 -1.0 -0.7 dTDP-glucose pyrophosphorylase compare
PP_0125 -1.0 -1.7 putative cytochrome c-type protein compare
PP_0152 -1.0 -1.9 conserved exported protein of unknown function compare
PP_4379 -1.0 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2900 -1.0 -2.0 conserved protein of unknown function compare
PP_0887 -1.0 -3.8 Sensor histidine kinase compare
PP_1268 -1.0 -1.8 putative HtrA suppressor protein sohA compare
PP_3730 -1.0 -1.6 Transcriptional regulatory protein AruR compare
PP_4517 -1.0 -1.0 conserved protein of unknown function compare
PP_1568 -1.0 -1.0 conserved protein of unknown function compare
PP_4008 -1.0 -3.8 ATP-dependent serine protease compare
PP_1826 -1.0 -1.6 Hydrolase, isochorismatase family compare
PP_4957 -1.0 -2.3 conserved protein of unknown function compare
PP_3411 -1.0 -1.1 conserved protein of unknown function compare
PP_2334 -1.0 -3.7 2-methylisocitrate lyase compare
PP_5580 -1.0 -1.5 protein of unknown function compare
PP_2677 -1.0 -1.6 conserved exported protein of unknown function compare
PP_1553 -1.0 -1.1 conserved protein of unknown function compare
PP_0566 -1.0 -0.8 translation-related factor compare
PP_4098 -1.0 -1.0 UvrABC system protein C compare
PP_0414 -1.0 -2.6 Polyamine ABC transporter, permease protein compare
PP_0273 -0.9 -1.9 conserved protein of unknown function compare
PP_4942 -0.9 -1.7 conserved protein of unknown function compare
PP_1062 -0.9 -1.5 MutT/nudix family protein compare
PP_0185 -0.9 -4.2 Positive alginate biosynthesis regulatory protein compare
PP_2025 -0.9 -1.3 Exonuclease SbcD compare
PP_4769 -0.9 -2.3 conserved protein of unknown function compare
PP_1999 -0.9 -1.4 membrane protein required for colicin V production compare
PP_0945 -0.9 -1.3 conserved protein of unknown function compare
PP_3378 -0.9 -0.8 putative 2-ketogluconokinase compare
PP_5393 -0.9 -0.9 putative metal-binding chaperone compare
PP_0848 -0.9 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5430 -0.9 -2.5 protein of unknown function compare
PP_1002 -0.9 -2.7 arginine/ornithine antiporter compare
PP_3876 -0.9 -1.9 conserved protein of unknown function compare
PP_0775 -0.9 -1.5 conserved protein of unknown function compare
PP_1629 -0.9 -3.4 Protein RecA compare
PP_2055 -0.9 -2.8 putative isomerase compare
PP_4546 -0.9 -2.3 ATP-dependent helicase HrpA compare
PP_3766 -0.9 -1.4 Lactoylglutathione lyase compare
PP_1697 -0.9 -1.8 transcriptional regulator, GntR family compare
PP_2299 -0.9 -1.9 Trigger factor compare
PP_4217 -0.9 -7.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4122 -0.9 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2475 -0.9 -2.8 Transcriptional regulator, TetR family compare
PP_1788 -0.9 -2.0 conserved protein of unknown function compare
PP_1215 -0.9 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_2932 -0.9 -3.2 Amidase family protein compare
PP_4124 -0.9 -1.8 NADH-quinone oxidoreductase subunit G compare
PP_4799 -0.9 -0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3908 -0.9 -2.2 conserved protein of unknown function compare
PP_4994 -0.9 -1.8 conserved protein of unknown function compare
PP_1476 -0.9 -3.2 conserved protein of unknown function compare
PP_1079 -0.8 -2.4 Ornithine carbamoyltransferase compare
PP_0283 -0.8 -2.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_4109 -0.8 -1.7 conserved protein of unknown function compare
PP_5309 -0.8 -4.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0913 -0.8 -3.3 conserved exported protein of unknown function compare
PP_5229 -0.8 -2.3 conserved protein of unknown function compare
PP_3551 -0.8 -1.3 DNA-binding response regulator, LuxR family compare
PP_5353 -0.8 -2.7 conserved exported protein of unknown function compare
PP_0202 -0.8 -2.5 CBS domain-containing protein compare
PP_5448 -0.8 -1.9 conserved protein of unknown function compare
PP_1828 -0.8 -2.8 conserved protein of unknown function compare
PP_2214 -0.8 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5303 -0.8 -3.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1190 -0.8 -1.8 conserved protein of unknown function compare
PP_4225 -0.8 -3.3 two component system DNA-binding transcriptional activator QseB compare
PP_4400 -0.8 -3.2 Bkd operon transcriptional regulator compare
PP_4121 -0.8 -1.9 NADH-quinone oxidoreductase subunit C/D compare
PP_0630 -0.8 -0.8 DNA gyrase inhibitor YacG compare
PP_5507 -0.8 -1.2 protein of unknown function compare
PP_1387 -0.8 -2.4 Probable HTH-type transcriptional regulator TtgR compare
PP_1691 -0.8 -1.9 conserved protein of unknown function compare
PP_2090 -0.8 -2.4 Uroporphyrinogen-III C-methyltransferase compare
PP_3883 -0.8 -1.8 putative Phage holin compare
PP_2348 -0.8 -2.2 Sensor histidine kinase compare
PP_5090 -0.8 -1.0 putative cell division protein compare
PP_1895 -0.8 -2.1 putative ABC transporter - ATP binding subunit compare
PP_1396 -0.8 -2.3 conserved protein of unknown function compare
PP_0276 -0.8 -0.8 Transcriptional regulator, Cro/CI family compare
PP_3511 -0.8 -3.5 Branched-chain-amino-acid aminotransferase compare
PP_5176 -0.8 -2.1 conserved protein of unknown function compare
PP_4215 -0.8 -2.5 pyoverdine biosynthesis related protein compare
PP_4084 -0.8 -2.8 conserved protein of unknown function compare
PP_5666 -0.8 -1.9 putative microcin B17-like processing protein, McbB family compare
PP_2978 -0.8 -2.5 conserved protein of unknown function compare
PP_4891 -0.8 -2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare


Specific Phenotypes

For 1 genes in this experiment