Experiment set37IT019 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.4 -3.4 conserved membrane protein of unknown function compare
PP_2309 -3.2 -1.7 conserved protein of unknown function compare
PP_4122 -3.0 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1381 -2.8 -1.5 4-carboxymuconolactone decarboxylase compare
PP_4874 -2.8 -1.9 50S ribosomal protein L9 compare
PP_5717 -2.6 -2.2 conserved protein of unknown function compare
PP_4004 -2.5 -6.6 DNA translocase FtsK compare
PP_4943 -2.5 -2.4 putative Glycosyl transferase compare
PP_4696 -2.4 -4.9 Nitrogen regulation protein NR(I) compare
PP_0246 -2.4 -2.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_0293 -2.4 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2107 -2.3 -1.7 conserved protein of unknown function compare
PP_2999 -2.2 -1.7 Glyoxalase family protein compare
PP_1468 -2.2 -3.8 Tyrosine recombinase XerD compare
PP_3999 -2.1 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4362 -2.1 -4.5 conserved protein of unknown function compare
PP_2402 -2.1 -2.8 putative Sensor histidine kinase compare
PP_3637 -2.1 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2378 -2.1 -2.0 Fe/S biogenesis protein NfuA compare
PP_0856 -2.0 -1.4 conserved lipoprotein of unknown function compare
PP_2379 -2.0 -4.6 putative cytochrome oxidase biogenesis protein compare
PP_2773 -1.9 -1.8 conserved protein of unknown function compare
PP_0999 -1.9 -3.7 carbamate kinase compare
PP_4058 -1.9 -8.8 1,4-alpha-glucan branching enzyme compare
PP_0393 -1.9 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2336 -1.8 -2.8 aconitate hydratase 1 compare
PP_1217 -1.8 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5528 -1.8 -1.7 conserved protein of unknown function compare
PP_2371 -1.8 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_3840 -1.7 -1.4 conserved protein of unknown function compare
PP_1489 -1.7 -2.7 CheW domain protein compare
PP_1215 -1.7 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_3924 -1.7 -3.2 conserved protein of unknown function compare
PP_1000 -1.7 -3.7 ornithine carbamoyltransferase, catabolic compare
PP_0630 -1.7 -1.2 DNA gyrase inhibitor YacG compare
PP_0888 -1.6 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1002 -1.6 -3.9 arginine/ornithine antiporter compare
PP_2615 -1.6 -1.8 hemolysin-coregulated protein compare
PP_1208 -1.6 -1.8 conserved protein of unknown function, SlyX family compare
PP_4569 -1.5 -3.3 conserved protein of unknown function compare
PP_4880 -1.5 -7.7 exoribonuclease R compare
PP_4379 -1.5 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2900 -1.5 -1.8 conserved protein of unknown function compare
PP_2214 -1.4 -3.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2520 -1.4 -3.1 conserved protein of unknown function compare
PP_0775 -1.4 -1.4 conserved protein of unknown function compare
PP_0401 -1.4 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_0001 -1.4 -1.3 probable chromosome-partitioning protein compare
PP_3037 -1.4 -2.4 C4-type zinc finger protein, DksA/TraR family compare
PP_2429 -1.4 -1.6 putative Membrane protein compare
PP_4937 -1.4 -2.8 toluene tolerance protein compare
PP_4273 -1.3 -1.1 Transcriptional regulator, MerR family compare
PP_5095 -1.3 -0.9 pyrroline-5-carboxylate reductase compare
PP_5350 -1.3 -3.3 Transcriptional regulator, RpiR family compare
PP_2302 -1.3 -3.9 DNA-binding, ATP-dependent protease compare
PP_2511 -1.3 -1.5 conserved protein of unknown function compare
PP_0872 -1.3 -4.2 Peptide chain release factor 3 compare
PP_4895 -1.3 -0.9 tRNA dimethylallyltransferase compare
PP_1664 -1.3 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0235 -1.3 -2.3 Peroxidase compare
PP_0292 -1.2 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1062 -1.2 -2.2 MutT/nudix family protein compare
PP_1237 -1.2 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4124 -1.2 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_1568 -1.2 -1.1 conserved protein of unknown function compare
PP_0184 -1.2 -4.5 Argininosuccinate lyase compare
PP_5229 -1.2 -2.9 conserved protein of unknown function compare
PP_5230 -1.2 -2.3 Tyrosine recombinase XerC compare
PP_4720 -1.2 -2.3 putative RNA binding protein compare
PP_1038 -1.2 -1.7 conserved protein of unknown function compare
PP_3487 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5028 -1.2 -2.9 proline iminopeptidase compare
PP_5310 -1.2 -4.1 junction-specific ATP-dependent DNA helicase compare
PP_1410 -1.2 -1.1 conserved protein of unknown function compare
PP_1999 -1.2 -1.5 membrane protein required for colicin V production compare
PP_4214 -1.2 -2.5 pyoverdine biosynthesis related protein compare
PP_4532 -1.2 -2.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0691 -1.2 -1.1 Glutamate 5-kinase compare
PP_2950 -1.1 -3.4 conserved protein of unknown function compare
PP_2740 -1.1 -1.9 Transcriptional regulator, MerR family compare
PP_2122 -1.1 -2.5 molybdenum cofactor biosynthesis protein B compare
PP_2745 -1.1 -1.9 Universal stress protein family compare
PP_2908 -1.1 -2.4 DNA-binding transcriptional repressor compare
PP_1826 -1.1 -1.9 Hydrolase, isochorismatase family compare
PP_1986 -1.1 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_1008 -1.1 -2.0 RNA polymerase subunit sigma-24 compare
PP_4482 -1.1 -2.3 Transcriptional regulator, AraC family compare
PP_5706 -1.1 -2.2 Sec translocation complex - SecG subunit compare
PP_0214 -1.1 -3.6 4-aminobutyrate aminotransferase compare
PP_1556 -1.1 -1.7 conserved protein of unknown function compare
PP_2581 -1.1 -1.6 conserved protein of unknown function compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2002 -1.1 -2.7 putative enzyme compare
PP_2345 -1.1 -3.1 conserved exported protein of unknown function compare
PP_2720 -1.1 -1.1 conserved protein of unknown function compare
PP_4262 -1.1 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1763 -1.1 -2.3 putative oxidoreductase compare
PP_5658 -1.0 -2.2 protein of unknown function compare
PP_5571 -1.0 -1.2 conserved protein of unknown function compare
PP_3064 -1.0 -1.7 Phage tail protein compare
PP_4387 -1.0 -1.7 conserved exported protein of unknown function compare
PP_2215 -1.0 -2.7 acetyl-CoA acetyltransferase compare
PP_4285 -1.0 -2.9 5-hydroxyisourate hydrolase compare
PP_0202 -1.0 -2.6 CBS domain-containing protein compare
PP_3481 -1.0 -1.4 conserved exported protein of unknown function compare
PP_1088 -1.0 -5.4 Argininosuccinate synthase compare
PP_5448 -1.0 -2.7 conserved protein of unknown function compare
PP_4166 -1.0 -2.9 conserved protein of unknown function compare
PP_1186 -1.0 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_4098 -1.0 -0.8 UvrABC system protein C compare
PP_4121 -1.0 -2.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5279 -1.0 -2.4 conserved protein of unknown function compare
PP_1898 -1.0 -1.2 MotA/TolQ/ExbB proton channel family protein compare
PP_2186 -0.9 -2.2 putative Formate dehydrogenase, delta subunit compare
PP_3339 -0.9 -1.4 conserved exported protein of unknown function compare
PP_2526 -0.9 -1.4 conserved membrane protein of unknown function compare
PP_2958 -0.9 -2.9 Glutaredoxin compare
PP_0834 -0.9 -1.4 Sec translocation complex subunit YajC compare
PP_3888 -0.9 -2.0 conserved protein of unknown function compare
PP_4471 -0.9 -2.7 Magnesium transporter compare
PP_1190 -0.9 -2.0 conserved protein of unknown function compare
PP_3511 -0.9 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_5309 -0.9 -3.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0439 -0.9 -2.6 conserved protein of unknown function compare
PP_3551 -0.9 -1.5 DNA-binding response regulator, LuxR family compare
PP_2503 -0.9 -2.0 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0821 -0.9 -2.1 conserved exported protein of unknown function compare
PP_1598 -0.9 -3.4 regulatory intramembrane protein RIP zinc protease compare
PP_4120 -0.9 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_4964 -0.9 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_3312 -0.9 -1.4 putative Heat shock protein compare
PP_4993 -0.9 -3.1 Glutathione synthetase compare
PP_3892 -0.9 -1.0 conserved protein of unknown function compare
PP_4238 -0.9 -1.9 conserved protein of unknown function compare
PP_1319 -0.9 -2.7 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4129 -0.9 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5022 -0.9 -0.9 Glutamine transport ATP-binding protein GlnQ compare
PP_4952 -0.9 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1185 -0.9 -3.1 Outer membrane protein H1 compare
PP_5491 -0.8 -1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_4697 -0.8 -2.1 poly(A) polymerase compare
PP_2449 -0.8 -3.1 conserved protein of unknown function compare
PP_1353 -0.8 -1.5 conserved membrane protein of unknown function compare
PP_3833 -0.8 -2.0 Response regulator compare
PP_4695 -0.8 -4.6 Sensory box histidine kinase compare
PP_1214 -0.8 -1.3 putative transcriptional regulatory protein compare
PP_5609 -0.8 -2.5 conserved protein of unknown function compare
PP_2737 -0.8 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4782 -0.8 -2.2 Phosphomethylpyrimidine kinase compare
PP_5294 -0.8 -2.7 Ribonuclease PH compare
PP_3702 -0.8 -2.1 conserved protein of unknown function compare
PP_2070 -0.8 -1.1 Transcriptional regulator, AraC family compare
PP_4944 -0.8 -1.9 Carbamoyltransferase compare
PP_3048 -0.8 -1.5 conserved protein of unknown function compare
PP_4126 -0.8 -0.6 NADH-quinone oxidoreductase subunit I compare
PP_1494 -0.8 -3.8 Response regulator/GGDEF domain protein compare
PP_4859 -0.8 -1.9 Transcriptional regulator, TetR family compare
PP_5017 -0.8 -0.8 Sec-independent protein translocase protein TatB compare
PP_4571 -0.8 -3.0 cysteine synthase A compare
PP_5201 -0.8 -1.6 conserved protein of unknown function, UPF0149 family compare
PP_0195 -0.8 -1.5 conserved protein of unknown function compare
PP_0188 -0.8 -2.9 putative Uroporphyrin-III C-methyltransferase compare
PP_1268 -0.8 -1.5 putative HtrA suppressor protein sohA compare
PP_1609 -0.8 -1.3 conserved protein of unknown function compare
PP_4620 -0.8 -3.7 Fumarylacetoacetase compare
PP_4789 -0.8 -2.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3357 -0.8 -2.0 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_1672 -0.8 -2.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4008 -0.8 -2.7 ATP-dependent serine protease compare
PP_t29 -0.8 -0.9 tRNA-Ala compare
PP_4916 -0.8 -3.1 putative esterase compare
PP_1122 -0.8 -0.9 OmpA family protein compare
PP_5561 -0.8 -2.8 conserved protein of unknown function compare
PP_2153 -0.8 -1.4 conserved protein of unknown function compare
PP_1544 -0.8 -2.1 conserved protein of unknown function compare
PP_5507 -0.8 -2.0 protein of unknown function compare
PP_2348 -0.8 -3.1 Sensor histidine kinase compare
PP_2203 -0.8 -1.3 conserved protein of unknown function compare
PP_4891 -0.8 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3434 -0.8 -0.6 conserved protein of unknown function compare
PP_0232 -0.8 -0.8 ATP-binding taurine transporter subunit compare
PP_5453 -0.8 -1.4 conserved protein of unknown function compare
PP_1216 -0.8 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3280 -0.8 -2.2 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_4401 -0.8 -3.4 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_2715 -0.8 -1.3 ArsH protein compare
PP_4966 -0.8 -1.4 transcriptional regulator of methionine metabolism compare
PP_5659 -0.8 -1.5 protein of unknown function compare
PP_1629 -0.7 -2.8 Protein RecA compare
PP_0119 -0.7 -2.1 putative zinc uptake regulation protein ZUR compare
PP_4940 -0.7 -3.4 Putative glycosyltransferase compare
PP_1783 -0.7 -0.9 dTDP-glucose pyrophosphorylase compare
PP_2061 -0.7 -1.8 conserved protein of unknown function compare
PP_2475 -0.7 -2.4 Transcriptional regulator, TetR family compare
PP_1027 -0.7 -3.4 Exodeoxyribonuclease 7 large subunit compare
PP_0887 -0.7 -3.4 Sensor histidine kinase compare
PP_2409 -0.7 -2.1 cobalt-zinc-cadmium resistance protein compare
PP_2665 -0.7 -2.6 Glycerol metabolism activator compare
PP_0148 -0.7 -3.7 conserved protein of unknown function compare
PP_4739 -0.7 -1.5 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments