Experiment set37IT018 for Pseudomonas putida KT2440

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.4 -3.2 conserved membrane protein of unknown function compare
PP_3505 -3.9 -2.5 conserved protein of unknown function compare
PP_4004 -3.7 -7.3 DNA translocase FtsK compare
PP_4943 -3.4 -2.4 putative Glycosyl transferase compare
PP_2402 -3.4 -2.3 putative Sensor histidine kinase compare
PP_0888 -3.2 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4122 -3.1 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5717 -3.0 -3.2 conserved protein of unknown function compare
PP_1468 -3.0 -2.5 Tyrosine recombinase XerD compare
PP_1237 -2.6 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4555 -2.6 -2.5 conserved protein of unknown function compare
PP_1128 -2.6 -4.2 OmpA family protein compare
PP_2581 -2.4 -2.1 conserved protein of unknown function compare
PP_0393 -2.4 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2121 -2.4 -2.6 putative Lipoprotein compare
PP_1898 -2.4 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_2378 -2.3 -1.6 Fe/S biogenesis protein NfuA compare
PP_1198 -2.3 -3.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1353 -2.3 -2.7 conserved membrane protein of unknown function compare
PP_4942 -2.3 -3.4 conserved protein of unknown function compare
PP_1217 -2.2 -5.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3999 -2.2 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -2.1 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0856 -2.1 -1.4 conserved lipoprotein of unknown function compare
PP_0630 -2.1 -1.2 DNA gyrase inhibitor YacG compare
PP_4120 -2.1 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_2970 -2.1 -3.7 conserved exported protein of unknown function compare
PP_4696 -2.0 -4.3 Nitrogen regulation protein NR(I) compare
PP_4797 -2.0 -2.1 conserved protein of unknown function compare
PP_2972 -2.0 -1.7 conserved protein of unknown function compare
PP_5168 -2.0 -3.3 sulfate/thiosulfate import ATP-binding protein compare
PP_0232 -2.0 -1.3 ATP-binding taurine transporter subunit compare
PP_2900 -2.0 -2.5 conserved protein of unknown function compare
PP_5350 -1.9 -3.9 Transcriptional regulator, RpiR family compare
PP_4058 -1.9 -7.7 1,4-alpha-glucan branching enzyme compare
PP_1096 -1.9 -2.3 putative electron transport complex protein compare
PP_5552 -1.9 -2.1 conserved protein of unknown function compare
PP_2575 -1.9 -1.4 conserved exported protein of unknown function compare
PP_0855 -1.8 -2.1 conserved protein of unknown function compare
PP_2336 -1.8 -2.7 aconitate hydratase 1 compare
PP_1002 -1.8 -4.2 arginine/ornithine antiporter compare
PP_4532 -1.8 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0872 -1.8 -5.3 Peptide chain release factor 3 compare
PP_5583 -1.8 -1.9 conserved protein of unknown function compare
PP_4693 -1.8 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_4944 -1.7 -3.7 Carbamoyltransferase compare
PP_1310 -1.7 -2.2 conserved hypothetical protein compare
PP_0691 -1.7 -1.2 Glutamate 5-kinase compare
PP_4981 -1.7 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_1994 -1.7 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_4880 -1.7 -8.0 exoribonuclease R compare
PP_5143 -1.6 -2.4 conserved membrane protein of unknown function compare
PP_2337 -1.6 -2.3 aconitate isomerase compare
PP_2302 -1.6 -4.7 DNA-binding, ATP-dependent protease compare
PP_2306 -1.6 -1.6 conserved exported protein of unknown function compare
PP_t12 -1.6 -0.9 tRNA-Thr compare
PP_3241 -1.6 -0.9 conserved exported protein of unknown function compare
PP_2433 -1.6 -2.0 conserved protein of unknown function compare
PP_2214 -1.6 -3.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1233 -1.5 -3.4 sulfurtransferase compare
PP_2475 -1.5 -4.0 Transcriptional regulator, TetR family compare
PP_4620 -1.5 -5.3 Fumarylacetoacetase compare
PP_2999 -1.5 -1.3 Glyoxalase family protein compare
PP_4961 -1.5 -1.3 putative Lipoprotein compare
PP_2370 -1.5 -1.6 conserved protein of unknown function compare
PP_5317 -1.5 -2.1 Probable chorismate pyruvate-lyase compare
PP_2922 -1.5 -2.2 Urea amidolyase-related protein compare
PP_4213 -1.5 -2.4 putative dipeptidase compare
PP_t29 -1.5 -1.3 tRNA-Ala compare
PP_0852 -1.5 -3.2 Transcriptional regulator, Cro/CI family compare
PP_2137 -1.5 -2.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_0307 -1.5 -2.0 conserved exported protein of unknown function compare
PP_4804 -1.5 -2.4 RlpA-like lipoprotein compare
PP_4211 -1.4 -3.9 outer membrane pyoverdine efflux protein compare
PP_5310 -1.4 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_0653 -1.4 -1.1 conserved protein of unknown function compare
PP_5095 -1.4 -0.9 pyrroline-5-carboxylate reductase compare
PP_0887 -1.4 -5.2 Sensor histidine kinase compare
PP_0293 -1.4 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1390 -1.4 -2.6 conserved exported protein of unknown function compare
PP_5229 -1.4 -3.1 conserved protein of unknown function compare
PP_4273 -1.4 -1.6 Transcriptional regulator, MerR family compare
PP_4700 -1.4 -1.3 pantothenate synthetase compare
PP_4470 -1.4 -2.9 putative transcriptional regulator (Arc domain-containing) compare
PP_2087 -1.4 -2.1 CmpX protein compare
PP_5571 -1.3 -1.3 conserved protein of unknown function compare
PP_2640 -1.3 -1.6 Acetyltransferase, GNAT family compare
PP_1307 -1.3 -2.9 AsnC family transcriptional regulator compare
PP_2107 -1.3 -0.8 conserved protein of unknown function compare
PP_5600 -1.3 -2.1 conserved protein of unknown function compare
PP_5230 -1.3 -2.4 Tyrosine recombinase XerC compare
PP_0642 -1.3 -2.2 conserved membrane protein of unknown function compare
PP_5359 -1.3 -2.5 CobW/P47K family protein compare
PP_3040 -1.3 -2.5 Pyocin R2_PP, holin compare
PP_1629 -1.3 -4.3 Protein RecA compare
PP_0512 -1.3 -2.2 hypothetical protein compare
PP_1783 -1.3 -0.9 dTDP-glucose pyrophosphorylase compare
PP_5309 -1.2 -4.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4008 -1.2 -3.6 ATP-dependent serine protease compare
PP_1045 -1.2 -1.0 Type II secretion pathway protein XcpP compare
PP_1553 -1.2 -1.6 conserved protein of unknown function compare
PP_5486 -1.2 -1.2 conserved protein of unknown function compare
PP_5083 -1.2 -2.5 putative Type IV pili biogenesis protein PilM compare
PP_1041 -1.2 -1.4 twin arginine protein export complex subunit compare
PP_0125 -1.2 -1.8 putative cytochrome c-type protein compare
PP_4726 -1.1 -1.4 Chaperone protein DnaJ compare
PP_4546 -1.1 -3.1 ATP-dependent helicase HrpA compare
PP_3766 -1.1 -1.6 Lactoylglutathione lyase compare
PP_4937 -1.1 -2.4 toluene tolerance protein compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0984 -1.1 -2.4 conserved membrane protein of unknown function compare
PP_5548 -1.1 -2.0 protein of unknown function compare
PP_4265 -1.1 -1.7 DNA-binding transcriptional dual regulator compare
PP_4886 -1.1 -4.4 conserved protein of unknown function compare
PP_0292 -1.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3647 -1.1 -1.8 putative Oxidoreductase compare
PP_2327 -1.1 -2.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4835 -1.1 -1.6 conserved exported protein of unknown function compare
PP_2568 -1.1 -1.0 Ring-cleaving dioxygenase compare
PP_1079 -1.1 -3.7 Ornithine carbamoyltransferase compare
PP_1319 -1.1 -3.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4941 -1.1 -4.5 conserved exported protein of unknown function compare
PP_0685 -1.1 -1.3 conserved protein of unknown function compare
PP_5274 -1.1 -0.7 conserved protein of unknown function compare
PP_5162 -1.0 -2.5 conserved exported protein of unknown function compare
PP_1763 -1.0 -1.8 putative oxidoreductase compare
PP_0214 -1.0 -3.9 4-aminobutyrate aminotransferase compare
PP_4209 -1.0 -5.0 ABC export system, membrane fusion protein compare
PP_4964 -1.0 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4254 -1.0 -1.2 conserved protein of unknown function compare
PP_1020 -1.0 -1.3 putative glucose-6-phosphate 1-epimerase compare
PP_1026 -1.0 -1.4 Peptidase, M23/M37 family compare
PP_4131 -1.0 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_3803 -1.0 -2.3 putative Cation ABC transporter, permease protein compare
PP_4593 -1.0 -1.1 conserved protein of unknown function compare
PP_1215 -1.0 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_3840 -1.0 -0.9 conserved protein of unknown function compare
PP_4768 -1.0 -1.8 Exonuclease compare
PP_3682 -1.0 -2.2 conserved protein of unknown function compare
PP_3339 -1.0 -2.6 conserved exported protein of unknown function compare
PP_1550 -1.0 -3.2 Transcriptional regulator, Cro/CI family compare
PP_2152 -1.0 -1.7 glycerophosphoryl diester phosphodiesterase compare
PP_4722 -1.0 -2.3 Transcription elongation factor GreA compare
PP_0025 -1.0 -0.9 hypothetical protein compare
PP_1428 -1.0 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_0913 -1.0 -3.2 conserved exported protein of unknown function compare
PP_2328 -1.0 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_1697 -1.0 -1.8 transcriptional regulator, GntR family compare
PP_5054 -1.0 -1.1 glutaredoxin 3 compare
PP_3541 -1.0 -1.2 Transporter, MgtC family compare
PP_5204 -1.0 -3.6 conserved protein of unknown function compare
PP_4124 -0.9 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_4400 -0.9 -3.2 Bkd operon transcriptional regulator compare
PP_4342 -0.9 -1.9 flagellar synthesis regulator, putative ATPase compare
PP_0291 -0.9 -2.9 conserved protein of unknown function compare
PP_0184 -0.9 -2.5 Argininosuccinate lyase compare
PP_0206 -0.9 -1.8 Ferredoxin, 4Fe-4S compare
PP_0065 -0.9 -2.2 NAD-binding component of TrK potassium transporter compare
PP_5014 -0.9 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0833 -0.9 -0.6 queuine tRNA-ribosyltransferase compare
PP_1571 -0.9 -1.7 conserved protein of unknown function compare
PP_4261 -0.9 -2.7 cation-transporting P-type ATPase compare
PP_1491 -0.9 -2.8 CheW domain protein compare
PP_0313 -0.9 -1.4 putative electron transfer flavoprotein beta subunit compare
PP_0536 -0.9 -1.9 conserved protein of unknown function compare
PP_2060 -0.9 -1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3064 -0.9 -1.2 Phage tail protein compare
PP_4227 -0.9 -1.0 conserved protein of unknown function compare
PP_4392 -0.9 -3.8 chemotaxis protein methyltransferase compare
PP_3052 -0.9 -0.8 conserved protein of unknown function compare
PP_2883 -0.9 -1.1 conserved protein of unknown function compare
PP_1646 -0.9 -2.8 putative Thioredoxin compare
PP_2345 -0.9 -1.6 conserved exported protein of unknown function compare
PP_4902 -0.9 -1.9 Oligoribonuclease compare
PP_5241 -0.9 -1.2 DNA-binding response regulator, LuxR family compare
PP_4217 -0.9 -6.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1410 -0.9 -0.8 conserved protein of unknown function compare
PP_1142 -0.9 -0.8 conserved protein of unknown function compare
PP_2379 -0.9 -2.3 putative cytochrome oxidase biogenesis protein compare
PP_2668 -0.9 -1.1 ABC efflux transporter, ATP-binding protein compare
PP_1609 -0.9 -1.0 conserved protein of unknown function compare
PP_5255 -0.9 -2.5 putative hydrolase compare
PP_3036 -0.9 -1.6 conserved protein of unknown function compare
PP_4236 -0.9 -2.4 putative Thiol:disulfide interchange protein dsbE compare
PP_3551 -0.9 -0.9 DNA-binding response regulator, LuxR family compare
PP_2958 -0.9 -2.1 Glutaredoxin compare
PP_2677 -0.9 -2.0 conserved exported protein of unknown function compare
PP_5456 -0.9 -1.0 conserved protein of unknown function compare
PP_0910 -0.9 -2.5 conserved exported protein of unknown function compare
PP_0850 -0.9 -2.7 Dual-specificity RNA methyltransferase RlmN compare
PP_3833 -0.8 -1.7 Response regulator compare
PP_5073 -0.8 -0.9 conserved exported protein of unknown function compare
PP_5499 -0.8 -1.4 conserved protein of unknown function compare
PP_0322 -0.8 -3.4 serine hydroxymethyltransferase compare
PP_0962 -0.8 -1.2 toluene-tolerance protein compare
PP_1303 -0.8 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_3511 -0.8 -3.3 Branched-chain-amino-acid aminotransferase compare
PP_1088 -0.8 -3.8 Argininosuccinate synthase compare
PP_1926 -0.8 -1.7 putative phosphotyrosine-protein phosphatase compare
PP_0435 -0.8 -2.9 Peptidase, M23/M37 family compare


Specific Phenotypes

For 1 genes in this experiment