Experiment set37IT016 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.9 -3.7 conserved membrane protein of unknown function compare
PP_5717 -3.0 -3.2 conserved protein of unknown function compare
PP_0888 -3.0 -2.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4004 -3.0 -6.6 DNA translocase FtsK compare
PP_4696 -2.9 -5.8 Nitrogen regulation protein NR(I) compare
PP_4265 -2.6 -1.8 DNA-binding transcriptional dual regulator compare
PP_4944 -2.5 -3.7 Carbamoyltransferase compare
PP_2370 -2.2 -3.3 conserved protein of unknown function compare
PP_2378 -2.2 -2.6 Fe/S biogenesis protein NfuA compare
PP_2402 -2.1 -2.6 putative Sensor histidine kinase compare
PP_1468 -2.0 -3.4 Tyrosine recombinase XerD compare
PP_4379 -2.0 -4.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0855 -2.0 -2.7 conserved protein of unknown function compare
PP_3999 -2.0 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2337 -2.0 -2.7 aconitate isomerase compare
PP_0856 -2.0 -3.0 conserved lipoprotein of unknown function compare
PP_0685 -1.9 -2.0 conserved protein of unknown function compare
PP_5095 -1.8 -1.2 pyrroline-5-carboxylate reductase compare
PP_4620 -1.8 -8.9 Fumarylacetoacetase compare
PP_4942 -1.8 -3.7 conserved protein of unknown function compare
PP_3447 -1.7 -1.4 conserved membrane protein of unknown function compare
PP_5706 -1.7 -3.3 Sec translocation complex - SecG subunit compare
PP_0393 -1.7 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2900 -1.7 -2.7 conserved protein of unknown function compare
PP_5328 -1.7 -1.2 putative phosphate transport system permease protein compare
PP_0401 -1.7 -2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_5017 -1.7 -1.4 Sec-independent protein translocase protein TatB compare
PP_5600 -1.6 -2.9 conserved protein of unknown function compare
PP_4406 -1.6 -2.0 conserved protein of unknown function compare
PP_5310 -1.6 -6.0 junction-specific ATP-dependent DNA helicase compare
PP_4799 -1.6 -1.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5295 -1.6 -2.0 conserved protein of unknown function compare
PP_2345 -1.6 -2.7 conserved exported protein of unknown function compare
PP_4058 -1.6 -6.7 1,4-alpha-glucan branching enzyme compare
PP_2336 -1.5 -3.2 aconitate hydratase 1 compare
PP_4129 -1.5 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4943 -1.5 -1.8 putative Glycosyl transferase compare
PP_2371 -1.5 -4.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4131 -1.5 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_2217 -1.4 -2.6 enoyl-CoA hydratase compare
PP_0593 -1.4 -1.0 putative ribosome-binding factor compare
PP_2309 -1.4 -1.3 conserved protein of unknown function compare
PP_0691 -1.4 -1.6 Glutamate 5-kinase compare
PP_1269 -1.4 -1.2 Universal stress protein family compare
PP_3840 -1.4 -1.4 conserved protein of unknown function compare
PP_1898 -1.4 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5267 -1.4 -1.9 putative cytochrome c5 compare
PP_4342 -1.4 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_1001 -1.3 -2.9 arginine deiminase compare
PP_4874 -1.3 -1.6 50S ribosomal protein L9 compare
PP_0484 -1.3 -4.6 transporter of an unknown substrate compare
PP_4532 -1.3 -2.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3803 -1.3 -4.6 putative Cation ABC transporter, permease protein compare
PP_5582 -1.3 -1.3 conserved protein of unknown function compare
PP_4693 -1.3 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_5552 -1.3 -1.9 conserved protein of unknown function compare
PP_0293 -1.3 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5000 -1.3 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_1217 -1.3 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4880 -1.3 -6.5 exoribonuclease R compare
PP_4961 -1.3 -1.9 putative Lipoprotein compare
PP_3052 -1.3 -1.3 conserved protein of unknown function compare
PP_1829 -1.3 -1.9 Hydrolase, alpha/beta fold family compare
PP_4213 -1.2 -2.1 putative dipeptidase compare
PP_3640 -1.2 -2.9 Transcriptional regulator, AraC family compare
PP_0905 -1.2 -1.7 conserved exported protein of unknown function compare
PP_1697 -1.2 -2.5 transcriptional regulator, GntR family compare
PP_0235 -1.2 -2.9 Peroxidase compare
PP_5093 -1.2 -1.2 twitching motility protein compare
PP_4008 -1.2 -4.9 ATP-dependent serine protease compare
PP_1128 -1.2 -2.6 OmpA family protein compare
PP_1232 -1.2 -5.2 conserved exported protein of unknown function compare
PP_1215 -1.2 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_0065 -1.2 -2.4 NAD-binding component of TrK potassium transporter compare
PP_4471 -1.1 -3.4 Magnesium transporter compare
PP_1646 -1.1 -3.6 putative Thioredoxin compare
PP_0630 -1.1 -1.1 DNA gyrase inhibitor YacG compare
PP_1729 -1.1 -1.9 conserved protein of unknown function compare
PP_4470 -1.1 -2.2 putative transcriptional regulator (Arc domain-containing) compare
PP_4130 -1.1 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5309 -1.1 -4.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4546 -1.1 -3.4 ATP-dependent helicase HrpA compare
PP_2572 -1.1 -4.3 conserved protein of unknown function compare
PP_2203 -1.1 -1.8 conserved protein of unknown function compare
PP_4066 -1.1 -2.6 methylglutaconyl-CoA hydratase compare
PP_2087 -1.1 -2.6 CmpX protein compare
PP_4941 -1.1 -4.0 conserved exported protein of unknown function compare
PP_4937 -1.1 -4.2 toluene tolerance protein compare
PP_3511 -1.1 -4.3 Branched-chain-amino-acid aminotransferase compare
PP_2475 -1.1 -3.3 Transcriptional regulator, TetR family compare
PP_4793 -1.1 -1.6 conserved protein of unknown function compare
PP_2820 -1.0 -2.5 HTH-type transcriptional regulator nfxB compare
PP_2720 -1.0 -1.2 conserved protein of unknown function compare
PP_3726 -1.0 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_4700 -1.0 -1.9 pantothenate synthetase compare
PP_2299 -1.0 -2.5 Trigger factor compare
PP_4994 -1.0 -2.5 conserved protein of unknown function compare
PP_0833 -1.0 -1.0 queuine tRNA-ribosyltransferase compare
PP_3903 -1.0 -1.9 conserved protein of unknown function compare
PP_3946 -1.0 -0.9 HTH-type transcriptional repressor NicR compare
PP_0291 -1.0 -3.1 conserved protein of unknown function compare
PP_1633 -1.0 -3.3 conserved exported protein of unknown function compare
PP_1783 -1.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_4690 -1.0 -2.3 Rieske 2Fe-2S family protein compare
PP_0998 -1.0 -3.0 conserved protein of unknown function compare
PP_2999 -1.0 -1.1 Glyoxalase family protein compare
PP_1739 -1.0 -1.8 conserved membrane protein of unknown function compare
PP_0846 -0.9 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_3357 -0.9 -3.6 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_0852 -0.9 -4.1 Transcriptional regulator, Cro/CI family compare
PP_0850 -0.9 -4.6 Dual-specificity RNA methyltransferase RlmN compare
PP_5311 -0.9 -4.2 putative signal transduction protein compare
PP_2439 -0.9 -4.4 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_0323 -0.9 -4.4 sarcosine oxidase subunit beta compare
PP_4215 -0.9 -2.1 pyoverdine biosynthesis related protein compare
PP_2215 -0.9 -3.2 acetyl-CoA acetyltransferase compare
PP_1000 -0.9 -2.8 ornithine carbamoyltransferase, catabolic compare
PP_5430 -0.9 -1.9 protein of unknown function compare
PP_1079 -0.9 -3.1 Ornithine carbamoyltransferase compare
PP_1508 -0.9 -2.5 conserved protein of unknown function compare
PP_0439 -0.9 -2.3 conserved protein of unknown function compare
PP_3080 -0.9 -3.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2379 -0.9 -3.2 putative cytochrome oxidase biogenesis protein compare
PP_5204 -0.9 -3.0 conserved protein of unknown function compare
PP_4098 -0.9 -1.3 UvrABC system protein C compare
PP_3637 -0.9 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1216 -0.9 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1489 -0.9 -1.7 CheW domain protein compare
PP_4451 -0.9 -2.8 conserved protein of unknown function compare
PP_4258 -0.9 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_0184 -0.9 -3.9 Argininosuccinate lyase compare
PP_5028 -0.8 -2.3 proline iminopeptidase compare
PP_4792 -0.8 -2.1 conserved exported protein of unknown function compare
PP_5658 -0.8 -1.9 protein of unknown function compare
PP_4517 -0.8 -1.3 conserved protein of unknown function compare
PP_4804 -0.8 -1.8 RlpA-like lipoprotein compare
PP_4482 -0.8 -1.6 Transcriptional regulator, AraC family compare
PP_3906 -0.8 -1.9 conserved protein of unknown function compare
PP_0326 -0.8 -2.7 sarcosine oxidase subunit gamma compare
PP_0307 -0.8 -1.7 conserved exported protein of unknown function compare
PP_5168 -0.8 -1.7 sulfate/thiosulfate import ATP-binding protein compare
PP_0848 -0.8 -2.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0787 -0.8 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3247 -0.8 -2.0 Transporter, bile acid/Na+ symporter family compare
PP_1428 -0.8 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_5350 -0.8 -2.4 Transcriptional regulator, RpiR family compare
PP_3332 -0.8 -2.4 putative cytochrome c-type protein compare
PP_2857 -0.8 -1.1 conserved exported protein of unknown function compare
PP_4329 -0.8 -1.2 FlhB domain protein compare
PP_3814 -0.8 -2.1 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_5229 -0.8 -2.0 conserved protein of unknown function compare
PP_4214 -0.8 -1.4 pyoverdine biosynthesis related protein compare
PP_0913 -0.8 -3.1 conserved exported protein of unknown function compare
PP_4699 -0.8 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4981 -0.8 -2.0 polyisoprene-binding protein, acidic stress response factor compare
PP_1328 -0.8 -1.5 Protein MraZ compare
PP_1310 -0.8 -1.7 conserved hypothetical protein compare
PP_3930 -0.8 -1.4 conserved exported protein of unknown function compare
PP_2328 -0.8 -2.3 Phosphoadenosine phosphosulfate reductase compare
PP_1521 -0.8 -2.7 conserved protein of unknown function compare
PP_1317 -0.8 -2.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0951 -0.7 -2.8 Ribosome hibernation promoting factor compare
PP_4101 -0.7 -3.0 Acetyltransferase, GNAT family compare
PP_4247 -0.7 -1.1 Exonuclease compare
PP_2929 -0.7 -4.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2721 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_0325 -0.7 -5.1 sarcosine oxidase subunit alpha compare
PP_2978 -0.7 -1.9 conserved protein of unknown function compare
PP_1224 -0.7 -2.8 periplasmic subunit of the TolQRA transport system compare
PP_0262 -0.7 -2.7 conserved protein of unknown function compare
PP_1186 -0.7 -1.6 two component system DNA-binding transcriptional dual regulator compare
PP_5294 -0.7 -2.7 Ribonuclease PH compare
PP_1678 -0.7 -1.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0781 -0.7 -1.3 conserved protein of unknown function compare
PP_1415 -0.7 -1.1 putative membrane associated enzyme subunit compare
PP_3551 -0.7 -0.8 DNA-binding response regulator, LuxR family compare
PP_4560 -0.7 -1.6 putative Ribonuclease BN compare
PP_3117 -0.7 -2.3 putative protein involved in error-prone processing of DNA lesions compare
PP_0001 -0.7 -0.9 probable chromosome-partitioning protein compare
PP_1088 -0.7 -4.6 Argininosuccinate synthase compare
PP_2798 -0.7 -2.6 putative Oxidoreductase compare
PP_1353 -0.7 -1.1 conserved membrane protein of unknown function compare
PP_5479 -0.7 -3.2 transcriptional regulator HTH, LysR family compare
PP_3792 -0.7 -1.6 conserved protein of unknown function compare
PP_1862 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_1621 -0.7 -2.9 Protein-L-isoaspartate O-methyltransferase compare
PP_1268 -0.7 -1.2 putative HtrA suppressor protein sohA compare
PP_4124 -0.7 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_2334 -0.7 -2.9 2-methylisocitrate lyase compare
PP_3902 -0.7 -1.6 conserved protein of unknown function compare
PP_4210 -0.7 -3.8 pyoverdine efflux carrier and ATP binding protein compare
PP_2429 -0.7 -1.3 putative Membrane protein compare
PP_5605 -0.7 -2.9 conserved exported protein of unknown function compare
PP_0999 -0.7 -1.2 carbamate kinase compare
PP_3810 -0.7 -1.1 conserved protein of unknown function compare
PP_4723 -0.7 -0.8 Carbamoyl-phosphate synthase large chain compare
PP_2511 -0.7 -1.1 conserved protein of unknown function compare
PP_4204 -0.7 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0832 -0.7 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1026 -0.7 -1.6 Peptidase, M23/M37 family compare


Specific Phenotypes

For 1 genes in this experiment