Experiment set37IT015 for Pseudomonas putida KT2440

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +7.8 39.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +7.4 30.9 Sensor protein GacS compare
PP_2889 +2.7 6.7 putative Transmembrane regulator PrtR compare
PP_4383 +2.3 8.8 Flagellar P-ring protein compare
PP_4353 +2.3 10.9 Flagellar biosynthetic protein fliR compare
PP_4386 +2.3 15.0 flagellar basal-body rod protein FlgF compare
PP_4365 +2.3 13.0 Flagellar protein FliJ compare
PP_4354 +2.2 4.1 flagellar export apparatus subunit compare
PP_4390 +2.2 12.9 flagellar basal-body rod protein FlgC compare
PP_4366 +2.2 16.5 flagellum-specific ATP synthase compare
PP_4368 +2.2 15.5 flagellar motor switch protein compare
PP_1655 +2.2 6.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4385 +2.2 10.3 flagellar basal-body rod protein FlgG compare
PP_4341 +2.1 14.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4344 +2.1 14.1 flagellar export pore protein compare
PP_4391 +2.1 10.5 flagellar basal-body rod protein FlgB compare
PP_4382 +2.0 15.9 Peptidoglycan hydrolase FlgJ compare
PP_4384 +2.0 14.5 Flagellar L-ring protein compare
PP_4352 +2.0 14.6 flagellin export apparatus, substrate specificity protein compare
PP_4381 +2.0 15.1 Flagellar hook-associated protein FlgK compare
PP_4394 +2.0 13.2 flagella basal body P-ring formation protein compare
PP_4369 +1.9 10.5 Flagellar M-ring protein compare
PP_4388 +1.9 14.3 Flagellar hook protein FlgE compare
PP_4358 +1.9 8.1 flagellar synthesis, switching and energizing component compare
PP_4370 +1.8 7.3 Flagellar hook-basal body complex protein FliE compare
PP_4361 +1.8 8.8 Flagellar hook-length control protein FliK compare
PP_1656 +1.8 7.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4376 +1.8 13.9 flagellar filament capping protein compare
PP_4396 +1.7 6.2 conserved protein of unknown function compare
PP_4337 +1.7 9.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4378 +1.7 13.8 flagellin, filament structural protein compare
PP_4355 +1.7 3.3 flagellar export apparatus subunit compare
PP_4356 +1.6 5.4 Flagellar protein FliO compare
PP_2231 +1.6 1.5 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5057 +1.6 7.5 Peptidase, M23/M37 family compare
PP_4367 +1.6 6.7 Flagellar assembly protein FliH compare
PP_4373 +1.6 10.7 Transcriptional regulator FleQ compare
PP_4380 +1.6 12.2 Flagellar hook-associated protein FlgL compare
PP_2000 +1.6 1.1 amidophosphoribosyl transferase compare
PP_2414 +1.5 2.9 conserved exported protein of unknown function compare
PP_1512 +1.5 5.8 conserved protein of unknown function compare
PP_4389 +1.5 8.8 Flagellar basal-body rod modification protein FlgD compare
PP_4359 +1.4 6.3 Flagellar protein FliL compare
PP_0574 +1.4 10.7 DNA-binding response regulator, LuxR family compare
PP_4336 +1.3 7.8 flagellar motor rotation protein compare
PP_1036 +1.3 7.8 membrane-bound lytic murein transglycosylase F compare
PP_4904 +1.3 8.5 Flagellar motor rotation protein compare
PP_5145 +1.3 9.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2027 +1.2 6.7 conserved exported protein of unknown function compare
PP_4171 +1.2 6.6 conserved exported protein of unknown function compare
PP_4910 +1.2 2.3 conserved protein of unknown function compare
PP_4375 +1.2 7.5 flagellar chaperone, inhibits premature FliC assembly compare
PP_1623 +1.2 8.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_2029 +1.2 3.3 von Willebrand factor type A domain protein compare
PP_2032 +1.2 5.6 putative ATPase compare
PP_5051 +1.2 2.8 conserved protein of unknown function compare
PP_1788 +1.1 2.3 conserved protein of unknown function compare
PP_1048 +1.1 2.4 putative protein secretion protein for export compare
PP_3110 +1.1 2.4 protein of unknown function compare
PP_2773 +1.1 1.0 conserved protein of unknown function compare
PP_0001 +1.1 1.6 probable chromosome-partitioning protein compare
PP_0241 +1.1 3.4 Transporter compare
PP_4372 +1.1 5.1 Sensory box histidine kinase FleS compare
PP_0274 +1.1 2.1 putative transcriptional regulator containing HTH domain compare
PP_4335 +1.0 5.7 flagellar motor protein compare
PP_1562 +1.0 2.1 putative Phage terminase, small subunit compare
PP_1204 +1.0 4.8 putative Lipoprotein compare
PP_3378 +1.0 2.2 putative 2-ketogluconokinase compare
PP_1087 +1.0 6.0 Outer membrane protein, OmpA family compare
PP_4364 +1.0 3.6 putative Anti-sigma F factor antagonist compare
PP_5109 +1.0 6.2 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_0725 +1.0 3.6 conserved hypothetical TPR repeat protein compare
PP_0914 +1.0 6.1 GGDEF domain protein compare
PP_2031 +1.0 2.6 conserved protein of unknown function compare
PP_4371 +1.0 5.3 two component system AtoC DNA-binding transcriptional activator compare
PP_4905 +1.0 4.7 Flagellar motor rotation protein compare
PP_5110 +1.0 2.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3398 +1.0 2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5058 +0.9 3.0 Carboxy-terminal-processing protease compare
PP_4710 +0.9 5.3 tRNA pseudouridine 55 synthase compare
PP_5597 +0.9 1.3 conserved protein of unknown function compare
PP_5644 +0.9 2.6 conserved membrane protein of unknown function compare
PP_5604 +0.9 1.8 putative subtilisin-like serine protease compare
PP_5225 +0.9 1.7 frataxin compare
PP_2365 +0.9 2.7 Transcriptional regulator, AraC family compare
PP_t49 +0.9 3.0 tRNA-Met compare
PP_5451 +0.9 2.1 protein of unknown function compare
PP_1734 +0.9 2.1 Probable septum site-determining protein MinC compare
PP_3460 +0.9 2.0 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3198 +0.9 1.2 Ferredoxin, 2Fe-2S compare
PP_5640 +0.8 2.7 conserved protein of unknown function compare
PP_4828 +0.8 1.7 Precorrin-8X methylmutase compare
PP_2028 +0.8 3.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2633 +0.8 0.7 conserved protein of unknown function compare
PP_0839 +0.8 1.9 tRNA Cm32/Um32 methyltransferase compare
PP_3938 +0.8 0.7 conserved protein of unknown function compare
PP_0086 +0.8 2.2 conserved protein of unknown function compare
PP_0355 +0.8 2.6 Response regulator compare
PP_5084 +0.8 4.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2765 +0.8 0.9 putative Sulfonate monooxygenase MsuD compare
PP_0945 +0.8 1.8 conserved protein of unknown function compare
PP_t11 +0.8 2.0 tRNA-Lys compare
PP_0587 +0.8 3.6 conserved exported protein of unknown function compare
PP_4163 +0.8 2.6 conserved exported protein of unknown function compare
PP_2695 +0.8 1.9 Transcriptional regulator, LysR family compare
PP_2883 +0.8 1.2 conserved protein of unknown function compare
PP_1493 +0.8 2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4989 +0.8 1.7 Protein PilJ compare
PP_2030 +0.8 3.4 conserved protein of unknown function compare
PP_4054 +0.7 2.2 conserved protein of unknown function compare
PP_2681 +0.7 1.6 coenzyme PQQ synthesis protein D compare
PP_5209 +0.7 2.3 conserved exported protein of unknown function compare
PP_2682 +0.7 2.8 Fe-containing alcohol dehydrogenase compare
PP_4290 +0.7 2.4 uric acid permease compare
PP_2403 +0.7 0.7 Chemotaxis protein CheY compare
PP_3017 +0.7 2.2 O6-methylguanine-DNA methyltransferase compare
PP_1364 +0.7 3.9 conserved exported protein of unknown function compare
PP_3407 +0.7 2.1 conserved protein of unknown function compare
PP_4662 +0.7 1.7 conserved protein of unknown function compare
PP_5202 +0.7 1.1 putative cell division protein compare
PP_3365 +0.7 1.0 Acetolactate synthase compare
PP_2756 +0.7 1.4 conserved protein of unknown function compare
PP_5243 +0.7 1.8 putative hydrolase compare
PP_4377 +0.7 2.6 putative Flagellin FlaG compare
PP_2060 +0.7 1.8 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3239 +0.7 0.7 putative cointegrate resolution protein T Tn4652 compare
PP_4897 +0.7 1.7 N-acetylmuramoyl-L-alanine amidase compare
PP_4778 +0.7 1.3 23S rRNA pseudouridine 2457 synthase compare
PP_2171 +0.7 2.1 Transporter, LysE family compare
PP_5253 +0.7 1.4 Arylesterase compare
PP_1503 +0.7 2.2 conserved protein of unknown function compare
PP_2764 +0.7 2.1 FMN reductase (NADPH) compare
PP_5628 +0.7 1.2 conserved protein of unknown function compare
PP_0834 +0.7 0.7 Sec translocation complex subunit YajC compare
PP_3891 +0.7 1.3 conserved protein of unknown function compare
PP_5499 +0.7 2.0 conserved protein of unknown function compare
PP_0819 +0.7 2.2 conserved ferredoxin-like protein of unknown function compare
PP_3926 +0.7 1.1 short-chain dehydrogenase compare
PP_3434 +0.7 1.0 conserved protein of unknown function compare
PP_4094 +0.7 1.3 conserved protein of unknown function compare
PP_3241 +0.7 0.8 conserved exported protein of unknown function compare
PP_1164 +0.7 0.9 Transcriptional regulator, LysR family compare
PP_0789 +0.7 2.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0191 +0.7 1.6 Transcriptional regulatory protein AlgQ compare
PP_2389 +0.7 3.4 conserved protein of unknown function compare
PP_0959 +0.7 1.6 phospholipid ABC transporter compare
PP_4642 +0.7 0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_5322 +0.6 2.8 putative metal ion transporter compare
PP_0164 +0.6 2.8 conserved protein of unknown function compare
PP_0948 +0.6 1.1 Phosphocarrier protein HPr compare
PP_1970 +0.6 3.1 putative Lipoprotein compare
PP_4172 +0.6 3.3 conserved exported protein of unknown function compare
PP_4734 +0.6 3.5 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_1307 +0.6 3.2 AsnC family transcriptional regulator compare
PP_0921 +0.6 1.9 Transcriptional regulator, ArsR family compare
PP_3064 +0.6 1.5 Phage tail protein compare
PP_5724 +0.6 2.2 conserved protein of unknown function compare
PP_1178 +0.6 2.6 conserved protein of unknown function compare
PP_4251 +0.6 1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_2585 +0.6 3.1 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PP_4198 +0.6 2.5 OmpA family protein compare
PP_1528 +0.6 1.1 conserved protein of unknown function compare
PP_4156 +0.6 1.6 Transcriptional regulator, LysR family compare
PP_4531 +0.6 1.5 conserved exported protein of unknown function compare
PP_1876 +0.6 1.6 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4333 +0.6 2.7 CheW domain protein compare
PP_1245 +0.6 2.4 conserved exported protein of unknown function compare
PP_4254 +0.6 1.2 conserved protein of unknown function compare
PP_1208 +0.6 0.8 conserved protein of unknown function, SlyX family compare
PP_5721 +0.6 2.4 conserved protein of unknown function compare
PP_2592 +0.6 1.3 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_2863 +0.6 1.7 conserved membrane protein of unknown function compare
PP_3643 +0.6 1.3 putative Oxidoreductase compare
PP_4328 +0.6 1.5 conserved protein of unknown function compare
PP_2472 +0.6 2.1 putative transcriptional regulator, MerR family compare
PP_3321 +0.6 2.6 conserved protein of unknown function compare
PP_4868 +0.6 2.4 Nicotinate phosphoribosyltransferase compare
PP_3770 +0.6 1.6 conserved protein of unknown function compare
PP_2777 +0.6 1.7 putative Acyl carrier protein compare
PP_2997 +0.6 2.0 CnmA compare
PP_2257 +0.6 2.8 putative aerotaxis receptor compare
PP_1193 +0.6 1.6 conserved membrane protein of unknown function compare
PP_1731 +0.6 1.2 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5473 +0.6 1.0 putative transcriptional regulator, LuxR family compare
PP_4253 +0.6 1.2 cytochrome c oxidase subunit, cbb3-type compare
PP_2103 +0.6 1.1 conserved protein of unknown function compare
PP_1062 +0.6 1.6 MutT/nudix family protein compare
PP_4331 +0.6 2.2 conserved protein of unknown function compare
PP_2555 +0.6 1.9 conserved protein of unknown function compare
PP_0590 +0.6 2.6 Transcriptional regulator, ArsR family compare
PP_5727 +0.6 2.8 protein of unknown function compare
PP_0064 +0.6 1.6 conserved protein of unknown function compare
PP_4803 +0.6 2.9 D-alanyl-D-alanine carboxypeptidase compare
PP_1325 +0.5 2.9 putative lipoprotein compare
PP_5599 +0.5 3.7 putative transcriptional regulator, LysR family compare
PP_5217 +0.5 3.5 Polyphosphate kinase compare
PP_0151 +0.5 1.2 conserved exported protein of unknown function compare
PP_4792 +0.5 1.3 conserved exported protein of unknown function compare
PP_2189 +0.5 1.5 conserved protein of unknown function compare
PP_3817 +0.5 1.6 Polyamine ABC transporter, ATP-binding protein compare


Specific Phenotypes

For 3 genes in this experiment