Experiment set37IT014 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.6 -3.3 conserved membrane protein of unknown function compare
PP_3365 -4.2 -1.4 Acetolactate synthase compare
PP_5717 -4.0 -3.7 conserved protein of unknown function compare
PP_4268 -3.5 -1.7 nucleoid-associated broad specificity regulator compare
PP_2999 -3.5 -1.7 Glyoxalase family protein compare
PP_4528 -3.5 -1.6 conserved protein of unknown function compare
PP_0888 -3.4 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_1215 -2.9 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1237 -2.8 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2720 -2.8 -1.6 conserved protein of unknown function compare
PP_2371 -2.7 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_3726 -2.6 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_2203 -2.6 -2.8 conserved protein of unknown function compare
PP_0001 -2.5 -1.7 probable chromosome-partitioning protein compare
PP_4227 -2.5 -2.1 conserved protein of unknown function compare
PP_1186 -2.5 -2.6 two component system DNA-binding transcriptional dual regulator compare
PP_1366 -2.5 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_2337 -2.5 -2.8 aconitate isomerase compare
PP_4696 -2.4 -5.6 Nitrogen regulation protein NR(I) compare
PP_0513 -2.4 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3999 -2.3 -5.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4265 -2.3 -1.6 DNA-binding transcriptional dual regulator compare
PP_5571 -2.2 -1.7 conserved protein of unknown function compare
PP_1468 -2.2 -2.5 Tyrosine recombinase XerD compare
PP_3434 -2.2 -2.2 conserved protein of unknown function compare
PP_5674 -2.1 -2.6 conserved protein of unknown function compare
PP_4004 -2.1 -3.4 DNA translocase FtsK compare
PP_0848 -2.1 -3.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5508 -2.1 -1.2 conserved protein of unknown function compare
PP_2370 -2.0 -2.3 conserved protein of unknown function compare
PP_4379 -2.0 -4.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5327 -2.0 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_4593 -2.0 -1.4 conserved protein of unknown function compare
PP_3904 -2.0 -2.1 conserved protein of unknown function compare
PP_1268 -2.0 -1.9 putative HtrA suppressor protein sohA compare
PP_2745 -2.0 -2.5 Universal stress protein family compare
PP_2378 -1.9 -2.3 Fe/S biogenesis protein NfuA compare
PP_4620 -1.9 -6.4 Fumarylacetoacetase compare
PP_1217 -1.9 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4808 -1.9 -2.2 23S rRNA m3psi1915 methyltransferase compare
PP_0691 -1.8 -1.3 Glutamate 5-kinase compare
PP_5201 -1.8 -2.5 conserved protein of unknown function, UPF0149 family compare
PP_4859 -1.8 -3.5 Transcriptional regulator, TetR family compare
PP_0957 -1.8 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4942 -1.8 -2.7 conserved protein of unknown function compare
PP_0852 -1.8 -3.5 Transcriptional regulator, Cro/CI family compare
PP_4213 -1.8 -1.4 putative dipeptidase compare
PP_2336 -1.8 -3.1 aconitate hydratase 1 compare
PP_4131 -1.7 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_1829 -1.7 -2.6 Hydrolase, alpha/beta fold family compare
PP_4214 -1.7 -3.1 pyoverdine biosynthesis related protein compare
PP_4210 -1.7 -8.1 pyoverdine efflux carrier and ATP binding protein compare
PP_2306 -1.7 -1.6 conserved exported protein of unknown function compare
PP_0393 -1.7 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4880 -1.6 -8.3 exoribonuclease R compare
PP_5495 -1.6 -2.3 protein of unknown function compare
PP_5267 -1.6 -1.6 putative cytochrome c5 compare
PP_5309 -1.6 -4.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4058 -1.6 -6.8 1,4-alpha-glucan branching enzyme compare
PP_1317 -1.6 -4.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0153 -1.6 -1.7 hypothetical protein compare
PP_5095 -1.6 -1.0 pyrroline-5-carboxylate reductase compare
PP_4129 -1.6 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4555 -1.5 -2.8 conserved protein of unknown function compare
PP_4262 -1.5 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3596 -1.5 -3.8 D-lysine oxidase compare
PP_5338 -1.5 -3.2 aspartate ammonia-lyase compare
PP_4120 -1.5 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_2976 -1.4 -1.5 putative transposase compare
PP_0856 -1.4 -2.6 conserved lipoprotein of unknown function compare
PP_4121 -1.4 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_t10 -1.4 -1.5 tRNA-Pro compare
PP_4722 -1.4 -3.0 Transcription elongation factor GreA compare
PP_4981 -1.4 -2.2 polyisoprene-binding protein, acidic stress response factor compare
PP_5310 -1.3 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_2142 -1.3 -2.5 Cell division inhibitor SulA compare
PP_0703 -1.3 -2.3 putative Transmembrane sensor compare
PP_3380 -1.3 -2.3 2-ketogluconate utilization repressor compare
PP_2847 -1.3 -1.5 Urease accessory protein UreJ compare
PP_0872 -1.3 -5.0 Peptide chain release factor 3 compare
PP_1739 -1.3 -1.8 conserved membrane protein of unknown function compare
PP_0937 -1.3 -3.4 endoribonuclease G (RNAse G) compare
PP_5475 -1.3 -1.1 conserved protein of unknown function compare
PP_5654 -1.3 -1.7 putative phosphotriesterase compare
PP_4546 -1.3 -3.3 ATP-dependent helicase HrpA compare
PP_4799 -1.2 -0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2903 -1.2 -1.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4288 -1.2 -2.1 ureidoglycolate lyase compare
PP_4964 -1.2 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0125 -1.2 -2.8 putative cytochrome c-type protein compare
PP_3730 -1.2 -1.7 Transcriptional regulatory protein AruR compare
PP_2581 -1.2 -0.8 conserved protein of unknown function compare
PP_5168 -1.2 -2.1 sulfate/thiosulfate import ATP-binding protein compare
PP_4317 -1.2 -1.4 conserved protein of unknown function compare
PP_4937 -1.2 -2.9 toluene tolerance protein compare
PP_2159 -1.2 -3.6 Copper-binding protein, plastocyanin/azurin family compare
PP_4739 -1.2 -2.2 conserved protein of unknown function compare
PP_5701 -1.2 -1.8 conserved protein of unknown function compare
PP_2302 -1.2 -3.1 DNA-binding, ATP-dependent protease compare
PP_0377 -1.2 -1.2 coenzyme PQQ synthesis protein D compare
PP_3239 -1.2 -1.5 putative cointegrate resolution protein T Tn4652 compare
PP_2900 -1.2 -1.8 conserved protein of unknown function compare
PP_0184 -1.1 -3.1 Argininosuccinate lyase compare
PP_4406 -1.1 -0.9 conserved protein of unknown function compare
PP_4943 -1.1 -1.6 putative Glycosyl transferase compare
PP_4693 -1.1 -2.9 RNA polymerase-binding transcription factor DksA compare
PP_5053 -1.1 -4.0 Protein-export protein SecB compare
PP_4018 -1.1 -1.6 Acetyltransferase, GNAT family compare
PP_0202 -1.1 -3.3 CBS domain-containing protein compare
PP_2107 -1.1 -1.0 conserved protein of unknown function compare
PP_3332 -1.1 -1.9 putative cytochrome c-type protein compare
PP_0345 -1.1 -2.0 putative Heptose kinase WapP compare
PP_4944 -1.1 -1.8 Carbamoyltransferase compare
PP_1442 -1.1 -2.1 conserved protein of unknown function compare
PP_0833 -1.1 -0.7 queuine tRNA-ribosyltransferase compare
PP_5557 -1.1 -1.6 protein of unknown function compare
PP_2828 -1.0 -3.0 conserved protein of unknown function compare
PP_4401 -1.0 -3.9 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_0794 -1.0 -2.4 1-phosphofructokinase monomer compare
PP_5748 -1.0 -0.8 cytochrome c heme lyase subunit compare
PP_2055 -1.0 -3.2 putative isomerase compare
PP_5430 -1.0 -2.0 protein of unknown function compare
PP_1208 -1.0 -0.8 conserved protein of unknown function, SlyX family compare
PP_4941 -1.0 -2.9 conserved exported protein of unknown function compare
PP_4236 -1.0 -3.0 putative Thiol:disulfide interchange protein dsbE compare
PP_3312 -1.0 -0.8 putative Heat shock protein compare
PP_2070 -1.0 -1.4 Transcriptional regulator, AraC family compare
PP_0258 -1.0 -2.5 regulator of murein cross-linking compare
PP_3014 -1.0 -2.1 conserved exported protein of unknown function compare
PP_3455 -1.0 -3.0 Multidrug efflux RND membrane fusion protein compare
PP_0900 -1.0 -3.0 PAP2 family protein compare
PP_1994 -1.0 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_3829 -1.0 -2.4 Molybdenum transport system permease protein ModB compare
PP_3876 -1.0 -1.1 conserved protein of unknown function compare
PP_0439 -1.0 -2.0 conserved protein of unknown function compare
PP_2110 -1.0 -2.0 putative ribosomal large subunit pseudouridine synthase compare
PP_5445 -1.0 -1.2 conserved protein of unknown function compare
PP_2172 -1.0 -2.7 conserved exported protein of unknown function compare
PP_2575 -1.0 -1.3 conserved exported protein of unknown function compare
PP_5140 -1.0 -1.9 Transcriptional regulator, MerR family compare
PP_5328 -1.0 -0.9 putative phosphate transport system permease protein compare
PP_4835 -1.0 -1.5 conserved exported protein of unknown function compare
PP_4209 -1.0 -3.8 ABC export system, membrane fusion protein compare
PP_2309 -1.0 -0.9 conserved protein of unknown function compare
PP_0566 -1.0 -0.7 translation-related factor compare
PP_5022 -1.0 -1.0 Glutamine transport ATP-binding protein GlnQ compare
PP_3942 -0.9 -2.3 maleate isomerase compare
PP_5702 -0.9 -1.5 conserved protein of unknown function compare
PP_2798 -0.9 -2.1 putative Oxidoreductase compare
PP_3408 -0.9 -2.2 cobalt transporter subunit A compare
PP_1646 -0.9 -2.8 putative Thioredoxin compare
PP_4008 -0.9 -3.3 ATP-dependent serine protease compare
PP_3798 -0.9 -2.0 conserved protein of unknown function compare
PP_2809 -0.9 -1.3 conserved membrane protein of unknown function compare
PP_0276 -0.9 -0.9 Transcriptional regulator, Cro/CI family compare
PP_1489 -0.9 -1.6 CheW domain protein compare
PP_2715 -0.9 -2.1 ArsH protein compare
PP_1088 -0.9 -4.3 Argininosuccinate synthase compare
PP_4066 -0.9 -2.1 methylglutaconyl-CoA hydratase compare
PP_5191 -0.9 -0.9 conserved exported protein of unknown function compare
PP_1404 -0.9 -1.8 conserved protein of unknown function compare
PP_5359 -0.9 -0.8 CobW/P47K family protein compare
PP_1045 -0.9 -1.3 Type II secretion pathway protein XcpP compare
PP_0484 -0.9 -3.2 transporter of an unknown substrate compare
PP_4403 -0.9 -2.9 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_3880 -0.9 -0.8 conserved exported protein of unknown function compare
PP_3064 -0.9 -1.4 Phage tail protein compare
PP_2402 -0.9 -1.1 putative Sensor histidine kinase compare
PP_0185 -0.9 -4.3 Positive alginate biosynthesis regulatory protein compare
PP_2122 -0.9 -2.3 molybdenum cofactor biosynthesis protein B compare
PP_1508 -0.9 -2.4 conserved protein of unknown function compare
PP_2334 -0.9 -2.6 2-methylisocitrate lyase compare
PP_4891 -0.9 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1938 -0.9 -1.6 conserved protein of unknown function compare
PP_0925 -0.9 -3.8 conserved protein of unknown function compare
PP_2169 -0.9 -3.3 tRNA-dihydrouridine synthase A compare
PP_4994 -0.9 -2.1 conserved protein of unknown function compare
PP_2682 -0.9 -3.0 Fe-containing alcohol dehydrogenase compare
PP_1142 -0.9 -0.9 conserved protein of unknown function compare
PP_2824 -0.9 -1.6 Transcriptional regulator, TetR family compare
PP_5548 -0.9 -1.6 protein of unknown function compare
PP_5528 -0.9 -1.1 conserved protein of unknown function compare
PP_4212 -0.8 -1.3 pyoverdine biosynthesis related protein compare
PP_1576 -0.8 -3.2 putative Immunity protein compare
PP_1026 -0.8 -2.4 Peptidase, M23/M37 family compare
PP_2677 -0.8 -1.9 conserved exported protein of unknown function compare
PP_0065 -0.8 -1.9 NAD-binding component of TrK potassium transporter compare
PP_4122 -0.8 -0.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4392 -0.8 -2.5 chemotaxis protein methyltransferase compare
PP_0593 -0.8 -0.6 putative ribosome-binding factor compare
PP_0111 -0.8 -3.0 Electron transport protein SCO1/SenC compare
PP_4124 -0.8 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_4875 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_5204 -0.8 -2.1 conserved protein of unknown function compare
PP_5230 -0.8 -1.4 Tyrosine recombinase XerC compare
PP_2846 -0.8 -2.4 urease accessory protein compare
PP_5350 -0.8 -1.5 Transcriptional regulator, RpiR family compare
PP_1346 -0.8 -1.9 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_2793 -0.8 -0.7 Acyl-CoA dehydrogenase family protein compare


Specific Phenotypes

For 2 genes in this experiment