Experiment set37IT014 for Pseudomonas putida KT2440

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +7.8 41.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +7.4 29.6 Sensor protein GacS compare
PP_4365 +2.3 8.3 Flagellar protein FliJ compare
PP_2889 +2.3 5.3 putative Transmembrane regulator PrtR compare
PP_4384 +2.1 13.1 Flagellar L-ring protein compare
PP_4353 +2.0 9.3 Flagellar biosynthetic protein fliR compare
PP_4356 +2.0 3.9 Flagellar protein FliO compare
PP_4369 +2.0 11.6 Flagellar M-ring protein compare
PP_1656 +2.0 7.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_4382 +2.0 10.8 Peptidoglycan hydrolase FlgJ compare
PP_4344 +2.0 12.0 flagellar export pore protein compare
PP_4368 +2.0 9.4 flagellar motor switch protein compare
PP_2414 +2.0 4.6 conserved exported protein of unknown function compare
PP_4358 +1.9 9.6 flagellar synthesis, switching and energizing component compare
PP_4366 +1.9 13.2 flagellum-specific ATP synthase compare
PP_4388 +1.9 13.7 Flagellar hook protein FlgE compare
PP_4381 +1.8 13.7 Flagellar hook-associated protein FlgK compare
PP_4352 +1.8 12.8 flagellin export apparatus, substrate specificity protein compare
PP_4373 +1.8 9.4 Transcriptional regulator FleQ compare
PP_4383 +1.8 5.6 Flagellar P-ring protein compare
PP_4394 +1.8 9.5 flagella basal body P-ring formation protein compare
PP_4391 +1.8 10.5 flagellar basal-body rod protein FlgB compare
PP_2000 +1.7 1.9 amidophosphoribosyl transferase compare
PP_4341 +1.7 9.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4370 +1.7 5.4 Flagellar hook-basal body complex protein FliE compare
PP_4354 +1.7 4.9 flagellar export apparatus subunit compare
PP_4386 +1.6 6.3 flagellar basal-body rod protein FlgF compare
PP_3938 +1.6 2.2 conserved protein of unknown function compare
PP_4396 +1.6 3.6 conserved protein of unknown function compare
PP_4378 +1.6 12.8 flagellin, filament structural protein compare
PP_1655 +1.6 4.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4367 +1.5 6.7 Flagellar assembly protein FliH compare
PP_4337 +1.5 6.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4380 +1.5 10.4 Flagellar hook-associated protein FlgL compare
PP_4375 +1.5 8.0 flagellar chaperone, inhibits premature FliC assembly compare
PP_4359 +1.5 6.3 Flagellar protein FliL compare
PP_4390 +1.4 6.4 flagellar basal-body rod protein FlgC compare
PP_4389 +1.4 6.5 Flagellar basal-body rod modification protein FlgD compare
PP_4361 +1.4 8.0 Flagellar hook-length control protein FliK compare
PP_5057 +1.4 6.3 Peptidase, M23/M37 family compare
PP_4376 +1.4 9.7 flagellar filament capping protein compare
PP_4701 +1.4 1.7 glucose-6-phosphate isomerase compare
PP_4385 +1.4 6.0 flagellar basal-body rod protein FlgG compare
PP_1322 +1.3 3.5 putative Lipoprotein compare
PP_0959 +1.3 1.3 phospholipid ABC transporter compare
PP_0574 +1.2 8.8 DNA-binding response regulator, LuxR family compare
PP_1097 +1.2 1.2 Methionine--tRNA ligase compare
PP_0127 +1.2 4.1 Thiol:disulfide interchange protein compare
PP_4343 +1.2 2.7 Flagellar biosynthesis protein FlhF compare
PP_2029 +1.2 2.2 von Willebrand factor type A domain protein compare
PP_3447 +1.2 2.0 conserved membrane protein of unknown function compare
PP_5331 +1.2 3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_0725 +1.2 4.6 conserved hypothetical TPR repeat protein compare
PP_3398 +1.2 3.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2028 +1.2 3.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2027 +1.2 4.2 conserved exported protein of unknown function compare
PP_5423 +1.2 2.5 conserved membrane protein of unknown function compare
PP_0022 +1.2 1.5 hypothetical protein compare
PP_4364 +1.2 4.3 putative Anti-sigma F factor antagonist compare
PP_4171 +1.2 5.9 conserved exported protein of unknown function compare
PP_1623 +1.1 8.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_3378 +1.1 2.0 putative 2-ketogluconokinase compare
PP_0948 +1.1 2.0 Phosphocarrier protein HPr compare
PP_1036 +1.1 5.8 membrane-bound lytic murein transglycosylase F compare
PP_2032 +1.1 4.9 putative ATPase compare
PP_4905 +1.1 3.6 Flagellar motor rotation protein compare
PP_2280 +1.1 2.5 conserved protein of unknown function compare
PP_5473 +1.1 2.8 putative transcriptional regulator, LuxR family compare
PP_4904 +1.0 5.2 Flagellar motor rotation protein compare
PP_4355 +1.0 2.4 flagellar export apparatus subunit compare
PP_2231 +1.0 1.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4582 +1.0 2.4 conserved membrane protein of unknown function compare
PP_5109 +1.0 4.0 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_5491 +1.0 1.5 conserved protein of unknown function with SEC-C motif domain compare
PP_3241 +1.0 1.3 conserved exported protein of unknown function compare
PP_2396 +1.0 2.3 conserved exported protein of unknown function compare
PP_1512 +1.0 2.5 conserved protein of unknown function compare
PP_4504 +1.0 0.7 conserved exported protein of unknown function compare
PP_5575 +1.0 2.2 conserved protein of unknown function compare
PP_4335 +1.0 6.1 flagellar motor protein compare
PP_5489 +1.0 2.5 conserved protein of unknown function compare
PP_4660 +1.0 4.3 Transcriptional regulator, LysR family compare
PP_0332 +1.0 2.1 putative Acyltransferase compare
PP_5145 +1.0 7.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4296 +0.9 1.4 conserved exported protein of unknown function compare
PP_0355 +0.9 3.0 Response regulator compare
PP_5597 +0.9 1.1 conserved protein of unknown function compare
PP_4561 +0.9 1.0 stress response protein compare
PP_2765 +0.9 2.4 putative Sulfonate monooxygenase MsuD compare
PP_4803 +0.9 4.2 D-alanyl-D-alanine carboxypeptidase compare
PP_2820 +0.9 1.2 HTH-type transcriptional regulator nfxB compare
PP_4419 +0.9 2.9 transposase compare
PP_2030 +0.9 3.6 conserved protein of unknown function compare
PP_1087 +0.9 4.8 Outer membrane protein, OmpA family compare
PP_1119 +0.9 2.9 conserved protein of unknown function compare
PP_4371 +0.9 4.1 two component system AtoC DNA-binding transcriptional activator compare
PP_4336 +0.9 3.9 flagellar motor rotation protein compare
PP_5008 +0.9 1.1 Poly granule-associated protein compare
PP_3121 +0.9 3.0 transcriptional regulator, LysR family compare
PP_1112 +0.9 5.7 conserved membrane protein of unknown function compare
PP_1326 +0.8 1.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2773 +0.8 1.5 conserved protein of unknown function compare
PP_3757 +0.8 1.7 Chemotaxis protein CheY compare
PP_5139 +0.8 2.4 cadmium translocating P-type ATPase compare
PP_4372 +0.8 3.6 Sensory box histidine kinase FleS compare
PP_5058 +0.8 3.0 Carboxy-terminal-processing protease compare
PP_3926 +0.8 1.2 short-chain dehydrogenase compare
PP_4871 +0.8 1.7 putative lysine decarboxylase family protein compare
PP_1562 +0.8 1.8 putative Phage terminase, small subunit compare
PP_2103 +0.8 2.1 conserved protein of unknown function compare
PP_1325 +0.8 3.7 putative lipoprotein compare
PP_0914 +0.8 4.4 GGDEF domain protein compare
PP_0509 +0.8 1.1 conserved protein of unknown function compare
PP_4073 +0.8 1.3 conserved exported protein of unknown function compare
PP_4223 +0.8 0.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3831 +0.8 3.5 conserved protein of unknown function compare
PP_4094 +0.8 1.7 conserved protein of unknown function compare
PP_3519 +0.8 1.1 putative Lipoprotein compare
PP_1066 +0.8 3.0 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0807 +0.8 3.3 DNA-binding transcriptional dual regulator (NO) compare
PP_3637 +0.8 1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5671 +0.8 2.2 conserved protein of unknown function compare
PP_0919 +0.8 1.7 conserved protein of unknown function compare
PP_0307 +0.8 1.8 conserved exported protein of unknown function compare
PP_4251 +0.8 1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0801 +0.8 1.1 conserved exported protein of unknown function compare
PP_3866 +0.8 1.2 conserved protein of unknown function compare
PP_2416 +0.8 1.7 putative Iron ABC transporter, ATP-binding protein compare
PP_5084 +0.8 4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2835 +0.8 1.6 putative oxidoreductase compare
PP_5202 +0.8 1.1 putative cell division protein compare
PP_3580 +0.8 1.8 conserved protein of unknown function compare
PP_5223 +0.8 1.8 regulator of nucleotide diphosphokinase compare
PP_1764 +0.8 1.8 Phosphoglycolate phosphatase 2 compare
PP_4710 +0.8 4.6 tRNA pseudouridine 55 synthase compare
PP_2307 +0.8 1.9 conserved protein of unknown function compare
PP_1713 +0.7 0.9 Transcriptional regulator PcaQ compare
PP_5000 +0.7 1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_4973 +0.7 3.6 conserved membrane protein of unknown function compare
PP_0666 +0.7 1.7 conserved protein of unknown function compare
PP_0789 +0.7 1.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4628 +0.7 1.6 conserved protein of unknown function compare
PP_4902 +0.7 1.5 Oligoribonuclease compare
PP_0627 +0.7 2.3 conserved protein of unknown function compare
PP_0958 +0.7 2.2 phospholipid ABC transporter ATP-binding subunit compare
PP_5274 +0.7 1.0 conserved protein of unknown function compare
PP_3234 +0.7 2.0 Heat shock protein, HSP20 family compare
PP_2619 +0.7 1.9 FHA domain protein compare
PP_2025 +0.7 1.4 Exonuclease SbcD compare
PP_5526 +0.7 2.2 conserved protein of unknown function compare
PP_1692 +0.7 1.6 conserved protein of unknown function compare
PP_1744 +0.7 2.1 conserved exported protein of unknown function compare
PP_4938 +0.7 3.8 putative Glycosyl transferase compare
PP_1110 +0.7 2.4 serine acetyltransferase compare
PP_3198 +0.7 1.1 Ferredoxin, 2Fe-2S compare
PP_2615 +0.7 1.4 hemolysin-coregulated protein compare
PP_5644 +0.7 1.4 conserved membrane protein of unknown function compare
PP_1493 +0.7 1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2760 +0.7 1.7 putative ribose transport permease protein compare
PP_3143 +0.7 1.7 Transcriptional regulator, LysR family compare
PP_t12 +0.7 0.8 tRNA-Thr compare
PP_4178 +0.7 1.6 Dienelactone hydrolase family protein compare
PP_5381 +0.7 1.8 hypothetical protein compare
PP_4198 +0.7 2.7 OmpA family protein compare
PP_1122 +0.7 1.2 OmpA family protein compare
PP_1355 +0.7 3.2 Muropeptide permease AmpG compare
PP_4100 +0.7 3.0 Transcriptional regulator, Cro/CI family compare
PP_4988 +0.7 2.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5675 +0.7 1.6 conserved protein of unknown function compare
PP_1028 +0.7 1.7 Transcriptional regulator, LysR family compare
PP_3359 +0.6 0.9 putative Hydroxycinnamic acid degradation regulator compare
PP_3058 +0.6 2.4 conserved protein of unknown function compare
PP_5499 +0.6 1.4 conserved protein of unknown function compare
PP_3480 +0.6 1.3 conserved protein of unknown function compare
PP_2738 +0.6 2.0 putative Transcriptional regulator compare
PP_5541 +0.6 2.3 conserved protein of unknown function compare
PP_2890 +0.6 1.8 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_4133 +0.6 1.7 Transcriptional regulator-related protein compare
PP_2883 +0.6 1.2 conserved protein of unknown function compare
PP_1647 +0.6 2.4 conserved protein of unknown function compare
PP_5610 +0.6 0.8 protein of unknown function compare
PP_0834 +0.6 1.2 Sec translocation complex subunit YajC compare
PP_1981 +0.6 1.2 tRNA-dihydrouridine synthase C compare
PP_4738 +0.6 1.1 conserved exported protein of unknown function compare
PP_0405 +0.6 3.1 conserved protein of unknown function compare
PP_3825 +0.6 1.9 conserved protein of unknown function compare
PP_4804 +0.6 1.3 RlpA-like lipoprotein compare
PP_4700 +0.6 1.2 pantothenate synthetase compare
PP_1855 +0.6 1.3 conserved exported protein of unknown function compare
PP_5216 +0.6 0.8 exopolyphosphatase compare
PP_4724 +0.6 0.4 Carbamoyl-phosphate synthase small chain compare
PP_3672 +0.6 1.8 conserved protein of unknown function compare
PP_4897 +0.6 1.8 N-acetylmuramoyl-L-alanine amidase compare
PP_1509 +0.6 2.1 conserved protein of unknown function compare
PP_4691 +0.6 1.8 sugar fermentation stimulation protein A compare
PP_5051 +0.6 1.7 conserved protein of unknown function compare
PP_1800 +0.6 3.2 Oxidoreductase Rmd compare
PP_1833 +0.6 1.9 conserved protein of unknown function compare
PP_3135 +0.6 2.6 putative Glycosyl transferase compare
PP_0796 +0.6 2.3 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment