Experiment set37IT012 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.7 -3.2 conserved membrane protein of unknown function compare
PP_0048 -4.6 -1.5 conserved protein of unknown function compare
PP_3903 -3.7 -2.6 conserved protein of unknown function compare
PP_1176 -3.5 -2.6 conserved protein of unknown function compare
PP_5008 -3.1 -1.5 Poly granule-associated protein compare
PP_4874 -3.1 -2.0 50S ribosomal protein L9 compare
PP_0888 -2.8 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2371 -2.7 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4004 -2.7 -5.4 DNA translocase FtsK compare
PP_3999 -2.7 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4943 -2.7 -2.6 putative Glycosyl transferase compare
PP_2337 -2.6 -3.1 aconitate isomerase compare
PP_0512 -2.5 -2.1 hypothetical protein compare
PP_4981 -2.5 -2.7 polyisoprene-binding protein, acidic stress response factor compare
PP_1468 -2.5 -2.8 Tyrosine recombinase XerD compare
PP_4902 -2.4 -3.5 Oligoribonuclease compare
PP_1214 -2.4 -3.1 putative transcriptional regulatory protein compare
PP_4265 -2.4 -1.6 DNA-binding transcriptional dual regulator compare
PP_1898 -2.4 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_2336 -2.3 -2.7 aconitate hydratase 1 compare
PP_1217 -2.2 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4120 -2.2 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_0856 -2.2 -2.1 conserved lipoprotein of unknown function compare
PP_4696 -2.1 -4.7 Nitrogen regulation protein NR(I) compare
PP_0393 -2.1 -3.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5350 -2.1 -3.6 Transcriptional regulator, RpiR family compare
PP_1045 -2.1 -1.6 Type II secretion pathway protein XcpP compare
PP_0401 -2.0 -3.7 Ribosomal RNA small subunit methyltransferase A compare
PP_1571 -2.0 -2.3 conserved protein of unknown function compare
PP_0276 -2.0 -1.3 Transcriptional regulator, Cro/CI family compare
PP_0691 -2.0 -1.3 Glutamate 5-kinase compare
PP_2765 -1.9 -1.8 putative Sulfonate monooxygenase MsuD compare
PP_4532 -1.9 -3.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0513 -1.8 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2379 -1.8 -3.8 putative cytochrome oxidase biogenesis protein compare
PP_5054 -1.8 -2.4 glutaredoxin 3 compare
PP_5201 -1.8 -2.4 conserved protein of unknown function, UPF0149 family compare
PP_0246 -1.8 -1.7 two-component system DNA-binding response transcriptional dual regulator compare
PP_2972 -1.8 -2.2 conserved protein of unknown function compare
PP_4837 -1.8 -2.7 conserved protein of unknown function compare
PP_2402 -1.7 -2.5 putative Sensor histidine kinase compare
PP_4942 -1.7 -2.7 conserved protein of unknown function compare
PP_1454 -1.7 -3.1 conserved protein of unknown function compare
PP_0852 -1.6 -2.4 Transcriptional regulator, Cro/CI family compare
PP_5095 -1.6 -1.0 pyrroline-5-carboxylate reductase compare
PP_2302 -1.6 -5.0 DNA-binding, ATP-dependent protease compare
PP_4726 -1.6 -2.5 Chaperone protein DnaJ compare
PP_4124 -1.6 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_2510 -1.6 -1.1 conserved protein of unknown function compare
PP_2403 -1.6 -1.4 Chemotaxis protein CheY compare
PP_1845 -1.5 -2.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_4129 -1.5 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4122 -1.5 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1198 -1.5 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4131 -1.5 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_4517 -1.5 -1.9 conserved protein of unknown function compare
PP_5309 -1.5 -4.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3487 -1.5 -2.4 conserved exported protein of unknown function compare
PP_5582 -1.5 -1.2 conserved protein of unknown function compare
PP_4058 -1.5 -6.2 1,4-alpha-glucan branching enzyme compare
PP_1317 -1.5 -3.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1986 -1.5 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_3411 -1.5 -1.1 conserved protein of unknown function compare
PP_4555 -1.4 -2.5 conserved protein of unknown function compare
PP_2327 -1.4 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2247 -1.4 -3.7 putative Endoribonuclease compare
PP_5274 -1.4 -0.9 conserved protein of unknown function compare
PP_4690 -1.4 -3.3 Rieske 2Fe-2S family protein compare
PP_4880 -1.4 -6.5 exoribonuclease R compare
PP_4799 -1.4 -1.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5310 -1.4 -4.4 junction-specific ATP-dependent DNA helicase compare
PP_1629 -1.4 -4.6 Protein RecA compare
PP_0125 -1.4 -2.7 putative cytochrome c-type protein compare
PP_4693 -1.4 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_2023 -1.4 -2.4 Glutathione S-transferase family protein compare
PP_t29 -1.3 -1.4 tRNA-Ala compare
PP_2433 -1.3 -1.7 conserved protein of unknown function compare
PP_2378 -1.3 -2.0 Fe/S biogenesis protein NfuA compare
PP_4213 -1.3 -1.9 putative dipeptidase compare
PP_0025 -1.3 -1.1 hypothetical protein compare
PP_2737 -1.3 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3924 -1.3 -2.4 conserved protein of unknown function compare
PP_5230 -1.3 -3.1 Tyrosine recombinase XerC compare
PP_2970 -1.3 -1.9 conserved exported protein of unknown function compare
PP_5295 -1.3 -1.9 conserved protein of unknown function compare
PP_4121 -1.3 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_3833 -1.3 -2.2 Response regulator compare
PP_1783 -1.3 -1.2 dTDP-glucose pyrophosphorylase compare
PP_1836 -1.3 -2.0 putative metal transporter, ZIP family compare
PP_0566 -1.3 -0.8 translation-related factor compare
PP_0065 -1.3 -2.7 NAD-binding component of TrK potassium transporter compare
PP_1999 -1.2 -0.9 membrane protein required for colicin V production compare
PP_4008 -1.2 -3.8 ATP-dependent serine protease compare
PP_0872 -1.2 -3.9 Peptide chain release factor 3 compare
PP_4065 -1.2 -4.2 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_0962 -1.2 -1.6 toluene-tolerance protein compare
PP_0232 -1.2 -1.0 ATP-binding taurine transporter subunit compare
PP_3295 -1.2 -2.3 YeeE/YedE family protein compare
PP_2999 -1.2 -1.1 Glyoxalase family protein compare
PP_4824 -1.2 -4.4 Sensor histidine kinase/response regulator compare
PP_0787 -1.2 -1.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1862 -1.2 -2.0 conserved membrane protein of unknown function compare
PP_2640 -1.2 -1.7 Acetyltransferase, GNAT family compare
PP_1466 -1.2 -1.8 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_5529 -1.1 -2.3 putative epimerase compare
PP_3247 -1.1 -2.5 Transporter, bile acid/Na+ symporter family compare
PP_0293 -1.1 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1208 -1.1 -1.3 conserved protein of unknown function, SlyX family compare
PP_0937 -1.1 -2.8 endoribonuclease G (RNAse G) compare
PP_1187 -1.1 -3.8 sensor protein compare
PP_0188 -1.1 -3.4 putative Uroporphyrin-III C-methyltransferase compare
PP_1000 -1.1 -2.6 ornithine carbamoyltransferase, catabolic compare
PP_3346 -1.1 -2.0 Nickel transporter ATP-binding protein compare
PP_5317 -1.1 -2.3 Probable chorismate pyruvate-lyase compare
PP_3797 -1.1 -3.3 conserved membrane protein of unknown function compare
PP_1186 -1.1 -1.3 two component system DNA-binding transcriptional dual regulator compare
PP_4789 -1.1 -3.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1731 -1.0 -1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5486 -1.0 -1.5 conserved protein of unknown function compare
PP_1729 -1.0 -1.1 conserved protein of unknown function compare
PP_1001 -1.0 -1.3 arginine deiminase compare
PP_3591 -1.0 -2.0 Delta 1-piperideine-2-carboxylate reductase compare
PP_1691 -1.0 -1.9 conserved protein of unknown function compare
PP_5487 -1.0 -1.6 conserved protein of unknown function compare
PP_5225 -1.0 -0.9 frataxin compare
PP_0943 -1.0 -2.6 conserved protein of unknown function compare
PP_2217 -1.0 -1.2 enoyl-CoA hydratase compare
PP_2118 -1.0 -1.4 conserved protein of unknown function compare
PP_4620 -1.0 -3.5 Fumarylacetoacetase compare
PP_4504 -1.0 -1.0 conserved exported protein of unknown function compare
PP_3278 -1.0 -4.0 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit compare
PP_4844 -1.0 -2.1 putative Urea ABC transporter, ATP-binding protein compare
PP_4133 -1.0 -1.2 Transcriptional regulator-related protein compare
PP_3898 -1.0 -2.1 conserved protein of unknown function compare
PP_1215 -1.0 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4247 -1.0 -1.0 Exonuclease compare
PP_2370 -1.0 -1.8 conserved protein of unknown function compare
PP_1142 -1.0 -0.9 conserved protein of unknown function compare
PP_5327 -1.0 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_0258 -1.0 -2.2 regulator of murein cross-linking compare
PP_2220 -1.0 -2.6 C4-type zinc finger protein, DksA/TraR family compare
PP_5001 -1.0 -1.6 protease HslVU, ATPase component compare
PP_1982 -1.0 -3.3 small heat shock protein IbpA compare
PP_3544 -0.9 -5.1 Transcriptional regulator, GntR family compare
PP_4722 -0.9 -2.2 Transcription elongation factor GreA compare
PP_2820 -0.9 -1.8 HTH-type transcriptional regulator nfxB compare
PP_4273 -0.9 -1.3 Transcriptional regulator, MerR family compare
PP_1609 -0.9 -1.9 conserved protein of unknown function compare
PP_2269 -0.9 -2.1 putative N-acetylmuramoyl-L-alanine amidase compare
PP_4400 -0.9 -3.1 Bkd operon transcriptional regulator compare
PP_0643 -0.9 -1.5 protein of unknown function compare
PP_1664 -0.9 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_2211 -0.9 -3.1 Transcriptional regulator, AraC family compare
PP_1415 -0.9 -2.4 putative membrane associated enzyme subunit compare
PP_3563 -0.9 -2.1 conserved exported protein of unknown function compare
PP_4760 -0.9 -2.4 Alcohol dehydrogenase, zinc-containing compare
PP_3802 -0.9 -2.9 putative Cation ABC transporter, ATP-binding protein compare
PP_1268 -0.9 -1.7 putative HtrA suppressor protein sohA compare
PP_5168 -0.9 -1.7 sulfate/thiosulfate import ATP-binding protein compare
PP_5045 -0.9 -2.3 tRNA sulfurtransferase compare
PP_1190 -0.9 -1.4 conserved protein of unknown function compare
PP_2932 -0.9 -3.0 Amidase family protein compare
PP_0406 -0.9 -1.2 Nucleotidyltransferase family protein compare
PP_1441 -0.9 -1.8 tRNA (cmo5U34)-methyltransferase compare
PP_0841 -0.9 -2.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_2186 -0.9 -2.4 putative Formate dehydrogenase, delta subunit compare
PP_4210 -0.9 -4.3 pyoverdine efflux carrier and ATP binding protein compare
PP_0656 -0.9 -2.3 putative Amino acid ABC transporter, permease protein compare
PP_3617 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_0986 -0.9 -3.1 aminomethyltransferase compare
PP_3883 -0.9 -1.8 putative Phage holin compare
PP_4262 -0.9 -1.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5500 -0.9 -1.3 protein of unknown function compare
PP_1237 -0.9 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1826 -0.9 -1.5 Hydrolase, isochorismatase family compare
PP_5055 -0.9 -2.6 Sulfurtransferase compare
PP_4560 -0.9 -1.6 putative Ribonuclease BN compare
PP_0757 -0.9 -2.5 conserved protein of unknown function compare
PP_2873 -0.9 -2.2 conserved protein of unknown function, UPF0145 family compare
PP_5600 -0.9 -1.0 conserved protein of unknown function compare
PP_4094 -0.9 -1.3 conserved protein of unknown function compare
PP_0174 -0.9 -4.5 conserved protein of unknown function compare
PP_0122 -0.9 -1.6 conserved exported protein of unknown function compare
PP_4546 -0.9 -2.2 ATP-dependent helicase HrpA compare
PP_4211 -0.9 -2.6 outer membrane pyoverdine efflux protein compare
PP_3821 -0.8 -3.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3248 -0.8 -2.4 Dyp-type peroxidase family protein compare
PP_1028 -0.8 -1.7 Transcriptional regulator, LysR family compare
PP_2477 -0.8 -3.0 isoquinoline 1-oxidoreductase subunit alpha compare
PP_0999 -0.8 -1.9 carbamate kinase compare
PP_5028 -0.8 -2.1 proline iminopeptidase compare
PP_4787 -0.8 -1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1216 -0.8 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5714 -0.8 -2.0 conserved protein of unknown function compare
PP_3245 -0.8 -0.7 conserved protein of unknown function compare
PP_1381 -0.8 -0.7 4-carboxymuconolactone decarboxylase compare
PP_1303 -0.8 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_2401 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_3884 -0.8 -2.1 Phage holin, lambda family compare
PP_2894 -0.8 -1.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments