Experiment set37IT012 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +7.4 48.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +7.3 30.7 Sensor protein GacS compare
PP_2889 +2.3 5.9 putative Transmembrane regulator PrtR compare
PP_4370 +2.1 7.3 Flagellar hook-basal body complex protein FliE compare
PP_4352 +2.0 14.4 flagellin export apparatus, substrate specificity protein compare
PP_4383 +2.0 4.1 Flagellar P-ring protein compare
PP_2280 +2.0 2.7 conserved protein of unknown function compare
PP_4341 +2.0 14.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4369 +2.0 9.8 Flagellar M-ring protein compare
PP_4366 +1.9 13.5 flagellum-specific ATP synthase compare
PP_4353 +1.9 7.2 Flagellar biosynthetic protein fliR compare
PP_4361 +1.9 9.2 Flagellar hook-length control protein FliK compare
PP_4390 +1.9 10.1 flagellar basal-body rod protein FlgC compare
PP_4354 +1.9 7.6 flagellar export apparatus subunit compare
PP_4365 +1.9 7.0 Flagellar protein FliJ compare
PP_2414 +1.9 4.0 conserved exported protein of unknown function compare
PP_4381 +1.9 13.7 Flagellar hook-associated protein FlgK compare
PP_4358 +1.8 8.7 flagellar synthesis, switching and energizing component compare
PP_4386 +1.8 8.2 flagellar basal-body rod protein FlgF compare
PP_1655 +1.8 6.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4382 +1.8 11.0 Peptidoglycan hydrolase FlgJ compare
PP_1528 +1.8 1.9 conserved protein of unknown function compare
PP_4384 +1.8 9.2 Flagellar L-ring protein compare
PP_0001 +1.7 3.6 probable chromosome-partitioning protein compare
PP_4344 +1.7 11.6 flagellar export pore protein compare
PP_4388 +1.7 12.6 Flagellar hook protein FlgE compare
PP_4391 +1.7 9.0 flagellar basal-body rod protein FlgB compare
PP_4356 +1.7 5.4 Flagellar protein FliO compare
PP_4385 +1.7 8.7 flagellar basal-body rod protein FlgG compare
PP_4368 +1.6 7.2 flagellar motor switch protein compare
PP_4394 +1.6 9.3 flagella basal body P-ring formation protein compare
PP_4367 +1.6 5.4 Flagellar assembly protein FliH compare
PP_4337 +1.6 7.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4373 +1.6 11.5 Transcriptional regulator FleQ compare
PP_4380 +1.6 11.2 Flagellar hook-associated protein FlgL compare
PP_2231 +1.6 1.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4378 +1.5 11.7 flagellin, filament structural protein compare
PP_1656 +1.5 5.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_2000 +1.5 1.4 amidophosphoribosyl transferase compare
PP_4376 +1.4 9.9 flagellar filament capping protein compare
PP_4375 +1.3 6.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_2027 +1.3 4.9 conserved exported protein of unknown function compare
PP_1512 +1.3 3.8 conserved protein of unknown function compare
PP_4389 +1.3 6.5 Flagellar basal-body rod modification protein FlgD compare
PP_2681 +1.3 1.1 coenzyme PQQ synthesis protein D compare
PP_2976 +1.3 1.2 putative transposase compare
PP_4372 +1.3 4.9 Sensory box histidine kinase FleS compare
PP_1733 +1.2 2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0846 +1.2 0.9 DnaK-like molecular chaperone specific for IscU compare
PP_3110 +1.2 2.5 protein of unknown function compare
PP_0574 +1.2 8.7 DNA-binding response regulator, LuxR family compare
PP_4359 +1.2 5.9 Flagellar protein FliL compare
PP_2032 +1.2 5.2 putative ATPase compare
PP_1164 +1.2 1.8 Transcriptional regulator, LysR family compare
PP_1048 +1.2 3.0 putative protein secretion protein for export compare
PP_1623 +1.2 7.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_3198 +1.2 2.4 Ferredoxin, 2Fe-2S compare
PP_1087 +1.1 6.9 Outer membrane protein, OmpA family compare
PP_2360 +1.1 2.9 putative type 1 pili subunit CsuA/B protein compare
PP_4904 +1.1 6.2 Flagellar motor rotation protein compare
PP_3328 +1.1 3.4 putative Ring-cleaving dioxygenase compare
PP_0959 +1.1 0.9 phospholipid ABC transporter compare
PP_4196 +1.1 2.7 conserved exported protein of unknown function compare
PP_4905 +1.1 5.2 Flagellar motor rotation protein compare
PP_4171 +1.1 6.6 conserved exported protein of unknown function compare
PP_0948 +1.0 1.8 Phosphocarrier protein HPr compare
PP_5533 +1.0 1.8 conserved protein of unknown function compare
PP_3637 +1.0 1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3211 +1.0 1.8 ABC transporter, ATP-binding protein compare
PP_1493 +1.0 3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0653 +1.0 1.5 conserved protein of unknown function compare
PP_5145 +1.0 8.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1036 +1.0 5.5 membrane-bound lytic murein transglycosylase F compare
PP_2903 +1.0 1.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4396 +1.0 2.3 conserved protein of unknown function compare
PP_1439 +1.0 2.2 conserved exported protein of unknown function compare
PP_4336 +1.0 4.5 flagellar motor rotation protein compare
PP_0958 +1.0 3.0 phospholipid ABC transporter ATP-binding subunit compare
PP_0127 +1.0 2.3 Thiol:disulfide interchange protein compare
PP_4593 +0.9 1.5 conserved protein of unknown function compare
PP_5519 +0.9 2.5 conserved protein of unknown function of phage origin compare
PP_4331 +0.9 3.2 conserved protein of unknown function compare
PP_1041 +0.9 2.3 twin arginine protein export complex subunit compare
PP_2028 +0.9 3.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3532 +0.9 1.8 Transcriptional regulator, AsnC family compare
PP_0164 +0.9 2.8 conserved protein of unknown function compare
PP_5232 +0.9 2.0 conserved protein of unknown function compare
PP_1366 +0.9 0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_4910 +0.9 2.6 conserved protein of unknown function compare
PP_4724 +0.8 1.0 Carbamoyl-phosphate synthase small chain compare
PP_4263 +0.8 1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5331 +0.8 3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_2747 +0.8 1.6 conserved protein of unknown function compare
PP_2539 +0.8 3.3 Transcriptional regulator, LysR family compare
PP_3185 +0.8 2.1 Pet18 protein compare
PP_1503 +0.8 1.5 conserved protein of unknown function compare
PP_4660 +0.8 1.4 Transcriptional regulator, LysR family compare
PP_2088 +0.8 2.2 RNA polymerase sigma factor SigX compare
PP_1256 +0.8 1.8 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_2030 +0.8 2.5 conserved protein of unknown function compare
PP_2396 +0.8 2.2 conserved exported protein of unknown function compare
PP_2136 +0.8 3.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1325 +0.8 3.7 putative lipoprotein compare
PP_2716 +0.8 1.6 arsenate reductase compare
PP_2389 +0.8 3.2 conserved protein of unknown function compare
PP_5619 +0.8 1.6 protein of unknown function compare
PP_5110 +0.8 2.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4804 +0.8 1.6 RlpA-like lipoprotein compare
PP_0434 +0.8 2.0 Anhydro-N-acetylmuramic acid kinase compare
PP_2653 +0.8 2.3 Transcriptional regulator, Cro/CI family compare
PP_5445 +0.8 1.0 conserved protein of unknown function compare
PP_0979 +0.8 3.3 DNA polymerase III subunit chi compare
PP_0565 +0.7 1.6 putative enzyme compare
PP_2750 +0.7 1.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1110 +0.7 2.6 serine acetyltransferase compare
PP_5473 +0.7 0.6 putative transcriptional regulator, LuxR family compare
PP_3817 +0.7 1.5 Polyamine ABC transporter, ATP-binding protein compare
PP_0789 +0.7 2.2 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_t12 +0.7 0.8 tRNA-Thr compare
PP_5489 +0.7 1.6 conserved protein of unknown function compare
PP_1020 +0.7 1.3 putative glucose-6-phosphate 1-epimerase compare
PP_0725 +0.7 2.8 conserved hypothetical TPR repeat protein compare
PP_4559 +0.7 1.7 peptide deformylase compare
PP_3326 +0.7 2.9 conserved exported protein of unknown function compare
PP_5084 +0.7 4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5058 +0.7 2.3 Carboxy-terminal-processing protease compare
PP_2373 +0.7 1.2 conserved protein of unknown function compare
PP_2530 +0.7 1.7 conserved protein of unknown function compare
PP_2959 +0.7 2.4 Alkylhydroperoxidase AhpD domain protein compare
PP_2768 +0.7 1.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3369 +0.7 2.6 Transcriptional regulator, LysR family compare
PP_0307 +0.7 1.6 conserved exported protein of unknown function compare
PP_2031 +0.7 2.1 conserved protein of unknown function compare
PP_1824 +0.7 1.3 Smr domain protein compare
PP_3244 +0.7 1.8 Magnesium transporter, MgtC family compare
PP_4833 +0.7 2.3 SURF1 domain protein compare
PP_5109 +0.7 3.3 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_0796 +0.7 1.8 conserved protein of unknown function compare
PP_3258 +0.7 1.3 conserved protein of unknown function compare
PP_5057 +0.7 3.6 Peptidase, M23/M37 family compare
PP_3861 +0.7 2.0 Phage FluMu protein gp46 compare
PP_1774 +0.7 1.0 conserved exported protein of unknown function compare
PP_5453 +0.7 0.7 conserved protein of unknown function compare
PP_1658 +0.7 1.9 conserved protein of unknown function compare
PP_0738 +0.7 2.1 conserved protein of unknown function compare
PP_2756 +0.7 1.9 conserved protein of unknown function compare
PP_3378 +0.7 0.8 putative 2-ketogluconokinase compare
PP_4271 +0.7 0.7 conserved protein of unknown function compare
PP_4803 +0.7 3.4 D-alanyl-D-alanine carboxypeptidase compare
PP_0685 +0.7 0.9 conserved protein of unknown function compare
PP_1440 +0.6 2.5 tRNA (mo5U34)-methyltransferase compare
PP_4387 +0.6 2.1 conserved exported protein of unknown function compare
PP_5597 +0.6 0.8 conserved protein of unknown function compare
PP_3726 +0.6 0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_4172 +0.6 4.0 conserved exported protein of unknown function compare
PP_1456 +0.6 2.4 conserved membrane protein of unknown function compare
PP_4335 +0.6 3.1 flagellar motor protein compare
PP_5723 +0.6 1.4 protein of unknown function compare
PP_1364 +0.6 3.3 conserved exported protein of unknown function compare
PP_5243 +0.6 1.5 putative hydrolase compare
PP_1314 +0.6 3.6 putative NAD(P)-linked reductase compare
PP_0807 +0.6 1.9 DNA-binding transcriptional dual regulator (NO) compare
PP_4377 +0.6 1.8 putative Flagellin FlaG compare
PP_5324 +0.6 1.3 Response regulator compare
PP_0236 +0.6 0.9 NAD(P)H-dependent FMN reductase subunit compare
PP_1204 +0.6 2.6 putative Lipoprotein compare
PP_0784 +0.6 1.6 conserved protein of unknown function compare
PP_2695 +0.6 0.9 Transcriptional regulator, LysR family compare
PP_2494 +0.6 3.0 conserved protein of unknown function compare
PP_1300 +0.6 1.3 putative amino acid ABC transporter - ATP-binding subunit compare
PP_3926 +0.6 0.9 short-chain dehydrogenase compare
PP_4707 +0.6 1.4 OsmY-related protein compare
PP_5267 +0.6 0.9 putative cytochrome c5 compare
PP_0069 +0.6 2.0 putative Rossmann fold nucleotide-binding protein compare
PP_4848 +0.6 1.2 Curved DNA-binding protein compare
PP_2748 +0.6 1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5390 +0.6 2.2 conserved hypothetical protein compare
PP_4328 +0.6 1.8 conserved protein of unknown function compare
PP_5430 +0.6 1.2 protein of unknown function compare
PP_5520 +0.6 1.7 conserved protein of unknown function compare
PP_5051 +0.6 1.1 conserved protein of unknown function compare
PP_5569 +0.6 1.3 protein of unknown function of phage origin compare
PP_1892 +0.6 1.1 conserved protein of unknown function compare
PP_2060 +0.6 1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5565 +0.6 1.6 conserved protein of unknown function compare
PP_3143 +0.6 2.5 Transcriptional regulator, LysR family compare
PP_0304 +0.6 2.2 Carnitine uptake ABC transporter, periplasmic component compare
PP_4561 +0.6 0.6 stress response protein compare
PP_2390 +0.6 3.3 Transcriptional regulator, LysR family compare
PP_1269 +0.6 0.7 Universal stress protein family compare
PP_1097 +0.6 0.7 Methionine--tRNA ligase compare
PP_2836 +0.6 2.3 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4710 +0.6 3.0 tRNA pseudouridine 55 synthase compare
PP_5711 +0.6 1.7 protein of unknown function compare
PP_4528 +0.6 1.0 conserved protein of unknown function compare
PP_2397 +0.6 1.6 EF hand domain protein compare
PP_4531 +0.6 1.0 conserved exported protein of unknown function compare
PP_0834 +0.6 1.3 Sec translocation complex subunit YajC compare
PP_0703 +0.6 1.5 putative Transmembrane sensor compare
PP_0649 +0.6 1.7 MutT/nudix family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments