Experiment set37IT011 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.2 -2.7 conserved membrane protein of unknown function compare
PP_1216 -4.9 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5201 -4.7 -2.7 conserved protein of unknown function, UPF0149 family compare
PP_2060 -4.0 -1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1562 -3.9 -1.6 putative Phage terminase, small subunit compare
PP_5241 -3.7 -2.5 DNA-binding response regulator, LuxR family compare
PP_2581 -3.5 -1.4 conserved protein of unknown function compare
PP_4268 -3.4 -1.4 nucleoid-associated broad specificity regulator compare
PP_1237 -3.2 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1729 -3.2 -1.9 conserved protein of unknown function compare
PP_4379 -3.2 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4532 -3.2 -2.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2433 -3.1 -2.0 conserved protein of unknown function compare
PP_0232 -3.1 -1.3 ATP-binding taurine transporter subunit compare
PP_5225 -3.1 -1.3 frataxin compare
PP_4109 -3.1 -2.0 conserved protein of unknown function compare
PP_4213 -3.1 -3.5 putative dipeptidase compare
PP_4817 -3.0 -3.2 MaoC domain protein compare
PP_0888 -3.0 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1344 -3.0 -1.7 conserved protein of unknown function compare
PP_3946 -2.9 -1.2 HTH-type transcriptional repressor NicR compare
PP_1215 -2.8 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_t29 -2.8 -2.3 tRNA-Ala compare
PP_4122 -2.8 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5093 -2.8 -1.1 twitching motility protein compare
PP_4004 -2.7 -4.2 DNA translocase FtsK compare
PP_3519 -2.6 -1.1 putative Lipoprotein compare
PP_0195 -2.6 -2.1 conserved protein of unknown function compare
PP_4874 -2.6 -1.5 50S ribosomal protein L9 compare
PP_0846 -2.5 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_0122 -2.4 -2.3 conserved exported protein of unknown function compare
PP_3098 -2.4 -1.0 conserved protein of unknown function compare
PP_5230 -2.4 -4.3 Tyrosine recombinase XerC compare
PP_2337 -2.4 -2.8 aconitate isomerase compare
PP_1508 -2.3 -2.9 conserved protein of unknown function compare
PP_4696 -2.3 -4.7 Nitrogen regulation protein NR(I) compare
PP_2773 -2.3 -1.3 conserved protein of unknown function compare
PP_1045 -2.3 -1.5 Type II secretion pathway protein XcpP compare
PP_1366 -2.3 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_4058 -2.2 -8.2 1,4-alpha-glucan branching enzyme compare
PP_2203 -2.2 -2.4 conserved protein of unknown function compare
PP_0087 -2.2 -1.9 conserved exported protein of unknown function compare
PP_0943 -2.2 -3.7 conserved protein of unknown function compare
PP_5090 -2.1 -1.5 putative cell division protein compare
PP_2474 -2.1 -2.8 Glutathione S-transferase family protein compare
PP_1041 -2.1 -1.6 twin arginine protein export complex subunit compare
PP_3346 -2.1 -1.8 Nickel transporter ATP-binding protein compare
PP_5528 -2.0 -1.4 conserved protein of unknown function compare
PP_t11 -2.0 -2.5 tRNA-Lys compare
PP_4722 -2.0 -4.7 Transcription elongation factor GreA compare
PP_4942 -2.0 -2.2 conserved protein of unknown function compare
PP_4211 -2.0 -3.8 outer membrane pyoverdine efflux protein compare
PP_5350 -2.0 -2.8 Transcriptional regulator, RpiR family compare
PP_1447 -2.0 -2.5 conserved protein of unknown function compare
PP_4098 -1.9 -1.5 UvrABC system protein C compare
PP_0872 -1.9 -5.5 Peptide chain release factor 3 compare
PP_4387 -1.9 -2.2 conserved exported protein of unknown function compare
PP_1004 -1.9 -2.3 conserved protein of unknown function compare
PP_3204 -1.9 -2.5 conserved protein of unknown function compare
PP_4207 -1.9 -2.2 conserved protein of unknown function compare
PP_2668 -1.9 -1.7 ABC efflux transporter, ATP-binding protein compare
PP_4832 -1.9 -2.4 Precorrin-6x reductase compare
PP_5508 -1.9 -0.9 conserved protein of unknown function compare
PP_2371 -1.8 -2.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -1.8 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_3726 -1.8 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_4581 -1.8 -2.1 putative amidotransferase compare
PP_4227 -1.8 -1.3 conserved protein of unknown function compare
PP_2336 -1.8 -2.2 aconitate hydratase 1 compare
PP_3904 -1.8 -1.9 conserved protein of unknown function compare
PP_1066 -1.8 -3.1 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1099 -1.8 -1.3 Cold shock protein CapB compare
PP_1553 -1.8 -2.0 conserved protein of unknown function compare
PP_1938 -1.8 -1.4 conserved protein of unknown function compare
PP_4066 -1.8 -2.1 methylglutaconyl-CoA hydratase compare
PP_4253 -1.8 -2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_1002 -1.8 -3.6 arginine/ornithine antiporter compare
PP_t57 -1.8 -2.4 tRNA-Arg compare
PP_0642 -1.8 -3.5 conserved membrane protein of unknown function compare
PP_2313 -1.7 -1.3 conserved membrane protein of unknown function compare
PP_5486 -1.7 -1.0 conserved protein of unknown function compare
PP_2217 -1.7 -1.8 enoyl-CoA hydratase compare
PP_0393 -1.7 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0984 -1.7 -2.4 conserved membrane protein of unknown function compare
PP_3800 -1.7 -2.3 conserved protein of unknown function compare
PP_0401 -1.7 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_3035 -1.7 -1.4 conserved protein of unknown function compare
PP_2899 -1.7 -1.2 conserved exported protein of unknown function compare
PP_4793 -1.7 -1.4 conserved protein of unknown function compare
PP_3999 -1.7 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0313 -1.7 -1.4 putative electron transfer flavoprotein beta subunit compare
PP_3247 -1.7 -1.6 Transporter, bile acid/Na+ symporter family compare
PP_4804 -1.6 -2.2 RlpA-like lipoprotein compare
PP_5315 -1.6 -3.0 Rubredoxin-1 compare
PP_3378 -1.6 -1.1 putative 2-ketogluconokinase compare
PP_4266 -1.6 -1.7 Adenine phosphoribosyltransferase compare
PP_0673 -1.6 -2.0 conserved protein of unknown function compare
PP_3876 -1.6 -1.1 conserved protein of unknown function compare
PP_2037 -1.6 -3.2 putative Aldolase compare
PP_1328 -1.6 -2.0 Protein MraZ compare
PP_5549 -1.6 -2.7 conserved protein of unknown function compare
PP_4120 -1.6 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_4875 -1.6 -3.4 conserved membrane protein of unknown function compare
PP_4342 -1.6 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_5621 -1.6 -1.3 protein of unknown function compare
PP_2378 -1.6 -1.8 Fe/S biogenesis protein NfuA compare
PP_0512 -1.5 -1.4 hypothetical protein compare
PP_3763 -1.5 -3.6 putative CobF protein compare
PP_0065 -1.5 -2.8 NAD-binding component of TrK potassium transporter compare
PP_0666 -1.5 -2.0 conserved protein of unknown function compare
PP_t12 -1.5 -0.7 tRNA-Thr compare
PP_5537 -1.5 -1.6 conserved membrane protein of unknown function compare
PP_0691 -1.5 -1.0 Glutamate 5-kinase compare
PP_2214 -1.5 -2.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3238 -1.5 -2.5 putative Transcriptional regulator PyrR compare
PP_1186 -1.5 -1.5 two component system DNA-binding transcriptional dual regulator compare
PP_5706 -1.4 -1.9 Sec translocation complex - SecG subunit compare
PP_0306 -1.4 -2.0 conserved protein of unknown function compare
PP_2442 -1.4 -1.3 conserved protein of unknown function, DUF480 family compare
PP_0262 -1.4 -2.6 conserved protein of unknown function compare
PP_4880 -1.4 -6.7 exoribonuclease R compare
PP_4517 -1.4 -1.8 conserved protein of unknown function compare
PP_4782 -1.4 -3.4 Phosphomethylpyrimidine kinase compare
PP_1489 -1.4 -0.9 CheW domain protein compare
PP_0550 -1.4 -2.1 conserved protein of unknown function compare
PP_4569 -1.4 -1.4 conserved protein of unknown function compare
PP_1697 -1.4 -1.9 transcriptional regulator, GntR family compare
PP_3014 -1.4 -2.1 conserved exported protein of unknown function compare
PP_2302 -1.4 -3.2 DNA-binding, ATP-dependent protease compare
PP_5730 -1.4 -1.8 conserved protein of unknown function compare
PP_1979 -1.4 -1.6 putative Hydrolase compare
PP_4504 -1.3 -1.1 conserved exported protein of unknown function compare
PP_0214 -1.3 -3.3 4-aminobutyrate aminotransferase compare
PP_0484 -1.3 -3.5 transporter of an unknown substrate compare
PP_5310 -1.3 -3.9 junction-specific ATP-dependent DNA helicase compare
PP_0856 -1.3 -2.0 conserved lipoprotein of unknown function compare
PP_0025 -1.3 -1.0 hypothetical protein compare
PP_5008 -1.3 -0.9 Poly granule-associated protein compare
PP_4503 -1.3 -2.1 DNA-binding response regulator compare
PP_3821 -1.3 -4.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5272 -1.3 -2.7 conserved protein of unknown function compare
PP_4546 -1.3 -2.8 ATP-dependent helicase HrpA compare
PP_5453 -1.3 -1.3 conserved protein of unknown function compare
PP_1265 -1.3 -2.2 conserved protein of unknown function compare
PP_3318 -1.3 -1.3 conserved protein of unknown function compare
PP_1317 -1.3 -2.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4944 -1.3 -2.4 Carbamoyltransferase compare
PP_4084 -1.3 -2.4 conserved protein of unknown function compare
PP_3804 -1.3 -2.0 conserved exported protein of unknown function compare
PP_0258 -1.3 -1.8 regulator of murein cross-linking compare
PP_3840 -1.3 -0.9 conserved protein of unknown function compare
PP_4018 -1.3 -1.8 Acetyltransferase, GNAT family compare
PP_1176 -1.3 -0.9 conserved protein of unknown function compare
PP_5327 -1.3 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_2090 -1.3 -1.5 Uroporphyrinogen-III C-methyltransferase compare
PP_1468 -1.2 -1.3 Tyrosine recombinase XerD compare
PP_1122 -1.2 -0.7 OmpA family protein compare
PP_2969 -1.2 -3.0 putative repressor of copper utilisation proteins compare
PP_4362 -1.2 -1.7 conserved protein of unknown function compare
PP_1068 -1.2 -1.9 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_0326 -1.2 -2.0 sarcosine oxidase subunit gamma compare
PP_4261 -1.2 -2.7 cation-transporting P-type ATPase compare
PP_2745 -1.2 -1.5 Universal stress protein family compare
PP_1994 -1.2 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_1560 -1.2 -2.1 conserved protein of unknown function compare
PP_2497 -1.2 -1.5 conserved protein of unknown function compare
PP_2269 -1.2 -2.4 putative N-acetylmuramoyl-L-alanine amidase compare
PP_3888 -1.2 -1.4 conserved protein of unknown function compare
PP_5491 -1.2 -1.4 conserved protein of unknown function with SEC-C motif domain compare
PP_2661 -1.2 -1.6 conserved protein of unknown function compare
PP_4124 -1.2 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_2729 -1.2 -2.4 conserved protein of unknown function compare
PP_5530 -1.2 -2.1 protein of unknown function compare
PP_5701 -1.2 -1.2 conserved protein of unknown function compare
PP_2328 -1.2 -3.1 Phosphoadenosine phosphosulfate reductase compare
PP_5429 -1.2 -2.6 protein of unknown function compare
PP_4133 -1.2 -1.4 Transcriptional regulator-related protein compare
PP_3284 -1.2 -1.9 enoyl-CoA hydratase-isomerase compare
PP_4994 -1.2 -2.4 conserved protein of unknown function compare
PP_4254 -1.2 -1.0 conserved protein of unknown function compare
PP_2272 -1.2 -2.3 conserved protein of unknown function compare
PP_4400 -1.2 -3.3 Bkd operon transcriptional regulator compare
PP_2650 -1.1 -1.9 putative 4-hydroxybutyrate dehydrogenase compare
PP_2077 -1.1 -3.2 diaminopimelate decarboxylase compare
PP_1550 -1.1 -2.0 Transcriptional regulator, Cro/CI family compare
PP_2568 -1.1 -0.9 Ring-cleaving dioxygenase compare
PP_3880 -1.1 -0.7 conserved exported protein of unknown function compare
PP_3024 -1.1 -2.1 conserved protein of unknown function compare
PP_5095 -1.1 -0.6 pyrroline-5-carboxylate reductase compare
PP_3924 -1.1 -1.3 conserved protein of unknown function compare
PP_0273 -1.1 -1.3 conserved protein of unknown function compare
PP_1097 -1.1 -0.8 Methionine--tRNA ligase compare
PP_0276 -1.1 -0.8 Transcriptional regulator, Cro/CI family compare
PP_4273 -1.1 -1.2 Transcriptional regulator, MerR family compare
PP_0697 -1.1 -2.6 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_2229 -1.1 -1.2 putative K(+)/H(+) antiporter subunit C compare
PP_0096 -1.1 -4.7 oligopeptidase A compare
PP_5615 -1.1 -3.3 conserved protein of unknown function compare
PP_2379 -1.1 -2.2 putative cytochrome oxidase biogenesis protein compare
PP_4209 -1.1 -3.2 ABC export system, membrane fusion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments