Experiment set37IT009 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -4.9 -3.1 conserved membrane protein of unknown function compare
PP_4004 -3.9 -6.0 DNA translocase FtsK compare
PP_5717 -3.2 -2.8 conserved protein of unknown function compare
PP_0848 -3.1 -3.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2402 -2.9 -2.0 putative Sensor histidine kinase compare
PP_0232 -2.9 -1.5 ATP-binding taurine transporter subunit compare
PP_0003 -2.6 -4.0 16S RNA methyltransferase compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2370 -2.5 -2.4 conserved protein of unknown function compare
PP_4696 -2.4 -4.0 Nitrogen regulation protein NR(I) compare
PP_2371 -2.3 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5495 -2.3 -2.1 protein of unknown function compare
PP_3365 -2.3 -1.2 Acetolactate synthase compare
PP_2214 -2.2 -3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3999 -2.2 -3.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5706 -2.1 -2.1 Sec translocation complex - SecG subunit compare
PP_5310 -2.1 -6.7 junction-specific ATP-dependent DNA helicase compare
PP_1000 -2.0 -2.8 ornithine carbamoyltransferase, catabolic compare
PP_2475 -2.0 -4.7 Transcriptional regulator, TetR family compare
PP_0566 -2.0 -1.1 translation-related factor compare
PP_0888 -2.0 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_3434 -2.0 -1.2 conserved protein of unknown function compare
PP_0513 -2.0 -2.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4942 -1.9 -2.7 conserved protein of unknown function compare
PP_0891 -1.9 -3.2 conserved exported protein of unknown function compare
PP_4214 -1.9 -3.5 pyoverdine biosynthesis related protein compare
PP_4470 -1.8 -3.5 putative transcriptional regulator (Arc domain-containing) compare
PP_2302 -1.8 -4.2 DNA-binding, ATP-dependent protease compare
PP_1026 -1.8 -3.8 Peptidase, M23/M37 family compare
PP_4620 -1.8 -6.3 Fumarylacetoacetase compare
PP_1198 -1.7 -3.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5007 -1.7 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4944 -1.7 -3.0 Carbamoyltransferase compare
PP_0007 -1.7 -2.4 conserved hypothetical protein compare
PP_2309 -1.6 -1.2 conserved protein of unknown function compare
PP_1697 -1.6 -2.9 transcriptional regulator, GntR family compare
PP_0393 -1.6 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4561 -1.6 -0.9 stress response protein compare
PP_4874 -1.6 -1.6 50S ribosomal protein L9 compare
PP_2341 -1.6 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4265 -1.6 -1.1 DNA-binding transcriptional dual regulator compare
PP_2932 -1.6 -4.6 Amidase family protein compare
PP_2379 -1.6 -3.9 putative cytochrome oxidase biogenesis protein compare
PP_2441 -1.6 -1.9 conserved protein of unknown function compare
PP_4120 -1.6 -1.5 NADH-quinone oxidoreductase subunit B compare
PP_2378 -1.6 -1.5 Fe/S biogenesis protein NfuA compare
PP_0872 -1.6 -4.8 Peptide chain release factor 3 compare
PP_0293 -1.5 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3930 -1.5 -2.2 conserved exported protein of unknown function compare
PP_1215 -1.5 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0673 -1.5 -1.9 conserved protein of unknown function compare
PP_4209 -1.5 -4.9 ABC export system, membrane fusion protein compare
PP_1153 -1.5 -2.4 putative lipoprotein compare
PP_0874 -1.5 -1.4 conserved protein of unknown function compare
PP_4943 -1.5 -1.7 putative Glycosyl transferase compare
PP_2217 -1.5 -2.5 enoyl-CoA hydratase compare
PP_1739 -1.5 -2.2 conserved membrane protein of unknown function compare
PP_4879 -1.5 -2.6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_3802 -1.5 -2.4 putative Cation ABC transporter, ATP-binding protein compare
PP_5054 -1.5 -1.7 glutaredoxin 3 compare
PP_4010 -1.5 -2.5 DNA replication inhibitor compare
PP_2118 -1.4 -1.8 conserved protein of unknown function compare
PP_4891 -1.4 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4930 -1.4 -1.9 putative small multidrug resistance protein compare
PP_1217 -1.4 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2122 -1.4 -2.4 molybdenum cofactor biosynthesis protein B compare
PP_2337 -1.4 -2.1 aconitate isomerase compare
PP_4804 -1.4 -1.9 RlpA-like lipoprotein compare
PP_2348 -1.4 -2.9 Sensor histidine kinase compare
PP_4210 -1.4 -6.0 pyoverdine efflux carrier and ATP binding protein compare
PP_0887 -1.4 -5.4 Sensor histidine kinase compare
PP_2222 -1.4 -3.0 conserved protein of unknown function compare
PP_0856 -1.4 -1.3 conserved lipoprotein of unknown function compare
PP_0401 -1.4 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_4768 -1.3 -2.0 Exonuclease compare
PP_4902 -1.3 -1.8 Oligoribonuclease compare
PP_2107 -1.3 -1.1 conserved protein of unknown function compare
PP_4482 -1.3 -2.1 Transcriptional regulator, AraC family compare
PP_4693 -1.3 -3.3 RNA polymerase-binding transcription factor DksA compare
PP_0122 -1.3 -2.8 conserved exported protein of unknown function compare
PP_4546 -1.3 -2.7 ATP-dependent helicase HrpA compare
PP_3020 -1.3 -2.7 putative Serine/threonine protein phosphatase compare
PP_3522 -1.3 -1.9 conserved protein of unknown function compare
PP_5359 -1.3 -1.0 CobW/P47K family protein compare
PP_1691 -1.3 -1.7 conserved protein of unknown function compare
PP_2900 -1.2 -1.6 conserved protein of unknown function compare
PP_1020 -1.2 -1.7 putative glucose-6-phosphate 1-epimerase compare
PP_5546 -1.2 -1.6 conserved protein of unknown function compare
PP_4829 -1.2 -2.3 putative precorrin-3B synthase compare
PP_5055 -1.2 -2.2 Sulfurtransferase compare
PP_5309 -1.2 -4.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2403 -1.2 -1.0 Chemotaxis protein CheY compare
PP_4058 -1.2 -5.3 1,4-alpha-glucan branching enzyme compare
PP_4159 -1.2 -2.0 Potassium-transporting ATPase C chain compare
PP_4342 -1.2 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_2931 -1.2 -2.3 conserved protein of unknown function compare
PP_2087 -1.2 -2.4 CmpX protein compare
PP_2327 -1.1 -3.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0276 -1.1 -0.9 Transcriptional regulator, Cro/CI family compare
PP_0772 -1.1 -3.9 Metallo-beta-lactamase family protein compare
PP_3243 -1.1 -1.9 Acetyltransferase, GNAT family compare
PP_4871 -1.1 -1.9 putative lysine decarboxylase family protein compare
PP_2171 -1.1 -2.4 Transporter, LysE family compare
PP_4400 -1.1 -3.8 Bkd operon transcriptional regulator compare
PP_4073 -1.1 -1.1 conserved exported protein of unknown function compare
PP_0978 -1.1 -1.6 conserved protein of unknown function compare
PP_1930 -1.1 -2.0 arsenic resistance transcriptional regulator compare
PP_3048 -1.1 -2.1 conserved protein of unknown function compare
PP_0484 -1.1 -3.4 transporter of an unknown substrate compare
PP_0852 -1.1 -3.5 Transcriptional regulator, Cro/CI family compare
PP_5027 -1.1 -1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1346 -1.1 -2.3 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1187 -1.1 -4.1 sensor protein compare
PP_4914 -1.1 -3.9 putative phytase-like protein compare
PP_1322 -1.1 -1.2 putative Lipoprotein compare
PP_4130 -1.1 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3339 -1.1 -1.7 conserved exported protein of unknown function compare
PP_5575 -1.1 -1.3 conserved protein of unknown function compare
PP_0937 -1.1 -3.1 endoribonuclease G (RNAse G) compare
PP_5221 -1.1 -2.2 conserved protein of unknown function, UPF0178 family compare
PP_4957 -1.1 -1.9 conserved protein of unknown function compare
PP_2142 -1.1 -1.4 Cell division inhibitor SulA compare
PP_1224 -1.1 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_4069 -1.1 -1.3 conserved protein of unknown function compare
PP_5658 -1.0 -2.3 protein of unknown function compare
PP_3803 -1.0 -2.7 putative Cation ABC transporter, permease protein compare
PP_4880 -1.0 -5.2 exoribonuclease R compare
PP_2336 -1.0 -2.0 aconitate hydratase 1 compare
PP_2857 -1.0 -1.5 conserved exported protein of unknown function compare
PP_5571 -1.0 -1.1 conserved protein of unknown function compare
PP_4084 -1.0 -4.0 conserved protein of unknown function compare
PP_2718 -1.0 -1.2 arsenic resistance transcriptional regulator compare
PP_5500 -1.0 -1.8 protein of unknown function compare
PP_3052 -1.0 -0.9 conserved protein of unknown function compare
PP_2299 -1.0 -2.3 Trigger factor compare
PP_4320 -1.0 -2.4 cytochrome c-type biogenesis protein compare
PP_0312 -1.0 -2.4 electron transfer flavoprotein, alpha subunit compare
PP_3509 -1.0 -1.7 Glyoxalase family protein compare
PP_2813 -1.0 -2.8 BNR domain protein compare
PP_0080 -1.0 -3.3 conserved protein of unknown function compare
PP_4238 -1.0 -1.8 conserved protein of unknown function compare
PP_0508 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4379 -1.0 -2.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3098 -1.0 -0.7 conserved protein of unknown function compare
PP_4129 -1.0 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4262 -1.0 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1546 -1.0 -2.7 conserved protein of unknown function compare
PP_4015 -1.0 -3.2 HflD-like high frequency lysogenization protein compare
PP_1994 -1.0 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_2791 -1.0 -2.5 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_1038 -1.0 -0.9 conserved protein of unknown function compare
PP_1353 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_1729 -1.0 -1.2 conserved protein of unknown function compare
PP_3043 -0.9 -1.2 conserved protein of unknown function compare
PP_4211 -0.9 -3.0 outer membrane pyoverdine efflux protein compare
PP_2152 -0.9 -1.2 glycerophosphoryl diester phosphodiesterase compare
PP_5327 -0.9 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_1763 -0.9 -1.8 putative oxidoreductase compare
PP_3014 -0.9 -1.6 conserved exported protein of unknown function compare
PP_0322 -0.9 -3.8 serine hydroxymethyltransferase compare
PP_5229 -0.9 -1.9 conserved protein of unknown function compare
PP_5598 -0.9 -1.4 conserved protein of unknown function compare
PP_4213 -0.9 -1.2 putative dipeptidase compare
PP_2220 -0.9 -3.1 C4-type zinc finger protein, DksA/TraR family compare
PP_1225 -0.9 -2.1 7-carboxy-7-deazaguanine synthase compare
PP_0893 -0.9 -1.7 ThiJ/PfpI family protein compare
PP_0439 -0.9 -2.2 conserved protein of unknown function compare
PP_4994 -0.9 -1.9 conserved protein of unknown function compare
PP_4133 -0.9 -1.4 Transcriptional regulator-related protein compare
PP_0240 -0.9 -1.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2416 -0.9 -1.8 putative Iron ABC transporter, ATP-binding protein compare
PP_1658 -0.9 -2.0 conserved protein of unknown function compare
PP_2462 -0.9 -1.3 conserved protein of unknown function compare
PP_0703 -0.9 -1.0 putative Transmembrane sensor compare
PP_1536 -0.9 -1.6 conserved protein of unknown function compare
PP_2766 -0.9 -2.5 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_4340 -0.9 -2.0 response regulator for chemotactic signal transduction compare
PP_5707 -0.9 -1.7 conserved protein of unknown function compare
PP_0713 -0.9 -3.6 Kef-type potassium/proton antiporter, CPA2 family compare
PP_3919 -0.9 -1.3 conserved protein of unknown function compare
PP_4937 -0.9 -2.0 toluene tolerance protein compare
PP_3511 -0.9 -3.1 Branched-chain-amino-acid aminotransferase compare
PP_5230 -0.9 -1.9 Tyrosine recombinase XerC compare
PP_3863 -0.9 -2.2 putative Phage tail protein compare
PP_1787 -0.8 -2.0 conserved protein of unknown function compare
PP_0185 -0.8 -3.5 Positive alginate biosynthesis regulatory protein compare
PP_1078 -0.8 -4.0 putative ABC transporter, ATP-binding protein compare
PP_0880 -0.8 -2.3 dipeptide ABC transporter - putative membrane subunit compare
PP_3590 -0.8 -2.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2345 -0.8 -1.8 conserved exported protein of unknown function compare
PP_4860 -0.8 -5.0 putative Mannose-6-phosphate isomerase compare
PP_3104 -0.8 -2.8 conserved protein of unknown function compare
PP_1629 -0.8 -3.0 Protein RecA compare
PP_4217 -0.8 -6.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4008 -0.8 -3.1 ATP-dependent serine protease compare
PP_3454 -0.8 -2.1 putative transcriptional regulatory protein compare
PP_4722 -0.8 -2.5 Transcription elongation factor GreA compare
PP_4690 -0.8 -1.3 Rieske 2Fe-2S family protein compare
PP_2695 -0.8 -1.8 Transcriptional regulator, LysR family compare
PP_5688 -0.8 -3.0 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare


Specific Phenotypes

For 2 genes in this experiment