Experiment set37IT008 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
PP_3105 -4.5 -3.1 conserved membrane protein of unknown function compare
PP_2442 -4.0 -2.4 conserved protein of unknown function, DUF480 family compare
PP_4943 -2.5 -1.7 putative Glycosyl transferase compare
PP_1215 -2.5 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_2142 -2.4 -3.3 Cell division inhibitor SulA compare
PP_1808 -2.1 -3.2 glucose-6-phosphate isomerase compare
PP_2402 -2.1 -2.0 putative Sensor histidine kinase compare
PP_0025 -2.1 -1.5 hypothetical protein compare
PP_1198 -2.1 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2403 -2.0 -1.6 Chemotaxis protein CheY compare
PP_4268 -2.0 -1.7 nucleoid-associated broad specificity regulator compare
PP_2337 -2.0 -2.0 aconitate isomerase compare
PP_1293 -1.9 -1.8 molybdopterin synthase small subunit compare
PP_0566 -1.9 -1.1 translation-related factor compare
PP_2217 -1.8 -2.5 enoyl-CoA hydratase compare
PP_0513 -1.8 -2.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5393 -1.8 -1.0 putative metal-binding chaperone compare
PP_5230 -1.8 -3.4 Tyrosine recombinase XerC compare
PP_5198 -1.7 -2.6 conserved protein of unknown function compare
PP_4379 -1.6 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5022 -1.6 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_3551 -1.6 -1.7 DNA-binding response regulator, LuxR family compare
PP_4109 -1.6 -2.0 conserved protein of unknown function compare
PP_0642 -1.6 -2.7 conserved membrane protein of unknown function compare
PP_2379 -1.5 -3.4 putative cytochrome oxidase biogenesis protein compare
PP_4696 -1.5 -3.4 Nitrogen regulation protein NR(I) compare
PP_1216 -1.5 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2794 -1.5 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1415 -1.5 -3.1 putative membrane associated enzyme subunit compare
PP_1986 -1.5 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_2784 -1.4 -2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5717 -1.4 -1.6 conserved protein of unknown function compare
PP_3892 -1.4 -1.3 conserved protein of unknown function compare
PP_2371 -1.4 -2.9 Sulphite reductase hemoprotein, beta subunit compare
PP_4847 -1.3 -2.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_3797 -1.3 -4.1 conserved membrane protein of unknown function compare
PP_4517 -1.3 -1.4 conserved protein of unknown function compare
PP_2203 -1.3 -1.8 conserved protein of unknown function compare
PP_4837 -1.3 -2.5 conserved protein of unknown function compare
PP_3098 -1.3 -0.9 conserved protein of unknown function compare
PP_0888 -1.2 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_1833 -1.2 -2.8 conserved protein of unknown function compare
PP_0872 -1.2 -3.9 Peptide chain release factor 3 compare
PP_1079 -1.2 -4.0 Ornithine carbamoyltransferase compare
PP_3902 -1.2 -1.9 conserved protein of unknown function compare
PP_3824 -1.2 -2.3 conserved exported protein of unknown function compare
PP_0065 -1.2 -2.0 NAD-binding component of TrK potassium transporter compare
PP_2370 -1.2 -1.6 conserved protein of unknown function compare
PP_2214 -1.2 -2.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3064 -1.2 -1.3 Phage tail protein compare
PP_0856 -1.2 -0.8 conserved lipoprotein of unknown function compare
PP_2378 -1.2 -1.1 Fe/S biogenesis protein NfuA compare
PP_5007 -1.2 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4162 -1.2 -2.5 conserved membrane protein of unknown function compare
PP_4769 -1.2 -1.7 conserved protein of unknown function compare
PP_3020 -1.2 -2.6 putative Serine/threonine protein phosphatase compare
PP_2816 -1.2 -2.6 putative Transcriptional regulator NfxB compare
PP_4997 -1.2 -1.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1605 -1.1 -2.2 Ribonuclease HII compare
PP_0173 -1.1 -4.0 putative transcriptional factor-related protein compare
PP_5100 -1.1 -2.2 dITP/XTP pyrophosphatase compare
PP_0891 -1.1 -2.8 conserved exported protein of unknown function compare
PP_2433 -1.1 -1.3 conserved protein of unknown function compare
PP_3052 -1.1 -1.0 conserved protein of unknown function compare
PP_1987 -1.1 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_4880 -1.1 -4.8 exoribonuclease R compare
PP_2036 -1.1 -3.3 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3511 -1.1 -4.6 Branched-chain-amino-acid aminotransferase compare
PP_0484 -1.1 -3.2 transporter of an unknown substrate compare
PP_3541 -1.0 -1.6 Transporter, MgtC family compare
PP_2568 -1.0 -1.1 Ring-cleaving dioxygenase compare
PP_0593 -1.0 -0.7 putative ribosome-binding factor compare
PP_2999 -1.0 -1.0 Glyoxalase family protein compare
PP_5121 -1.0 -2.4 conserved exported protein of unknown function compare
PP_4317 -1.0 -1.2 conserved protein of unknown function compare
PP_2054 -1.0 -2.0 putative DNA-binding transcriptional regulator compare
PP_0951 -1.0 -4.4 Ribosome hibernation promoting factor compare
PP_1824 -1.0 -1.0 Smr domain protein compare
PP_1860 -1.0 -2.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_0999 -1.0 -2.1 carbamate kinase compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_2847 -1.0 -1.3 Urease accessory protein UreJ compare
PP_3802 -1.0 -2.6 putative Cation ABC transporter, ATP-binding protein compare
PP_2432 -1.0 -2.8 6,7-dihydropteridine reductase compare
PP_3908 -1.0 -1.6 conserved protein of unknown function compare
PP_1232 -1.0 -3.5 conserved exported protein of unknown function compare
PP_0152 -1.0 -1.2 conserved exported protein of unknown function compare
PP_4073 -0.9 -1.2 conserved exported protein of unknown function compare
PP_0916 -0.9 -2.2 Amino acid transporter LysE compare
PP_1508 -0.9 -2.4 conserved protein of unknown function compare
PP_0214 -0.9 -3.7 4-aminobutyrate aminotransferase compare
PP_4265 -0.9 -0.9 DNA-binding transcriptional dual regulator compare
PP_2723 -0.9 -2.7 Uncharacterized oxidoreductase YhdF compare
PP_2740 -0.9 -1.5 Transcriptional regulator, MerR family compare
PP_0236 -0.9 -1.6 NAD(P)H-dependent FMN reductase subunit compare
PP_4952 -0.9 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5202 -0.9 -1.1 putative cell division protein compare
PP_4058 -0.9 -4.5 1,4-alpha-glucan branching enzyme compare
PP_2500 -0.9 -2.6 conserved protein of unknown function compare
PP_4693 -0.9 -2.3 RNA polymerase-binding transcription factor DksA compare
PP_2401 -0.9 -3.0 conserved membrane protein of unknown function compare
PP_4244 -0.9 -4.7 alternative sigma factor compare
PP_3603 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_4879 -0.9 -2.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4124 -0.9 -1.2 NADH-quinone oxidoreductase subunit G compare
PP_0125 -0.9 -2.3 putative cytochrome c-type protein compare
PP_0957 -0.9 -1.3 D-arabinose 5-phosphate isomerase compare
PP_1658 -0.9 -2.4 conserved protein of unknown function compare
PP_4211 -0.9 -2.4 outer membrane pyoverdine efflux protein compare
PP_5001 -0.9 -1.4 protease HslVU, ATPase component compare
PP_2898 -0.9 -1.8 conserved exported protein of unknown function compare
PP_5603 -0.9 -2.2 putative FAD dependent oxidoreductase compare
PP_4722 -0.9 -2.4 Transcription elongation factor GreA compare
PP_3803 -0.9 -3.3 putative Cation ABC transporter, permease protein compare
PP_1559 -0.9 -2.2 Holin compare
PP_5689 -0.8 -2.2 conserved protein of unknown function compare
PP_2857 -0.8 -1.4 conserved exported protein of unknown function compare
PP_0440 -0.8 -1.9 Elongation factor Tu-A compare
PP_5225 -0.8 -0.9 frataxin compare
PP_2846 -0.8 -2.4 urease accessory protein compare
PP_4942 -0.8 -1.5 conserved protein of unknown function compare
PP_2247 -0.8 -2.4 putative Endoribonuclease compare
PP_2348 -0.8 -2.9 Sensor histidine kinase compare
PP_1935 -0.8 -1.4 Transcriptional regulator, Cro/CI family compare
PP_3899 -0.8 -1.6 conserved protein of unknown function, hicB family compare
PP_4258 -0.8 -2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_4209 -0.8 -3.1 ABC export system, membrane fusion protein compare
PP_1731 -0.8 -1.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1739 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_3762 -0.8 -1.3 Response regulator compare
PP_5295 -0.8 -1.3 conserved protein of unknown function compare
PP_2655 -0.8 -1.3 conserved protein of unknown function compare
PP_4966 -0.8 -1.2 transcriptional regulator of methionine metabolism compare
PP_1938 -0.8 -1.4 conserved protein of unknown function compare
PP_4419 -0.8 -1.4 transposase compare
PP_3874 -0.8 -1.3 conserved protein of unknown function compare
PP_0398 -0.8 -2.0 Thiosulfate sulfurtransferase GlpE compare
PP_4018 -0.8 -1.3 Acetyltransferase, GNAT family compare
PP_3903 -0.8 -0.8 conserved protein of unknown function compare
PP_2327 -0.8 -2.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2643 -0.8 -2.8 aromatic acid chemoreceptor compare
PP_4210 -0.8 -4.2 pyoverdine efflux carrier and ATP binding protein compare
PP_3883 -0.8 -1.5 putative Phage holin compare
PP_3539 -0.8 -1.4 putative Transcriptional regulator compare
PP_0119 -0.8 -1.9 putative zinc uptake regulation protein ZUR compare
PP_3999 -0.8 -2.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4340 -0.8 -2.0 response regulator for chemotactic signal transduction compare
PP_4400 -0.8 -2.8 Bkd operon transcriptional regulator compare
PP_1827 -0.8 -3.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_1598 -0.8 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_0921 -0.8 -2.3 Transcriptional regulator, ArsR family compare
PP_3191 -0.8 -2.3 putative threonine ammonia-lyase / dehydratase compare
PP_4620 -0.8 -3.0 Fumarylacetoacetase compare
PP_1237 -0.8 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4260 -0.8 -1.8 conserved protein of unknown function compare
PP_0042 -0.8 -2.2 conserved exported protein of unknown function compare
PP_4534 -0.8 -1.7 conserved protein of unknown function compare
PP_5659 -0.8 -2.0 protein of unknown function compare
PP_0503 -0.8 -2.7 Major facilitator family transporter compare
PP_0947 -0.8 -2.7 conserved membrane protein of unknown function compare
PP_3013 -0.7 -1.2 conserved protein of unknown function compare
PP_2077 -0.7 -3.1 diaminopimelate decarboxylase compare
PP_5310 -0.7 -2.5 junction-specific ATP-dependent DNA helicase compare
PP_4513 -0.7 -2.7 conserved protein of unknown function compare
PP_3532 -0.7 -0.9 Transcriptional regulator, AsnC family compare
PP_1828 -0.7 -1.8 conserved protein of unknown function compare
PP_2530 -0.7 -1.2 conserved protein of unknown function compare
PP_5675 -0.7 -2.1 conserved protein of unknown function compare
PP_5425 -0.7 -2.8 conserved protein of unknown function compare
PP_5027 -0.7 -1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5327 -0.7 -1.3 putative phosphate ABC transporter, permease subunit compare
PP_3559 -0.7 -1.6 glycine betaine ABC transporter (permease) compare
PP_2159 -0.7 -1.8 Copper-binding protein, plastocyanin/azurin family compare
PP_0887 -0.7 -3.1 Sensor histidine kinase compare
PP_0326 -0.7 -1.4 sarcosine oxidase subunit gamma compare
PP_1353 -0.7 -1.3 conserved membrane protein of unknown function compare
PP_2345 -0.7 -0.9 conserved exported protein of unknown function compare
PP_2497 -0.7 -0.9 conserved protein of unknown function compare
PP_5600 -0.7 -0.7 conserved protein of unknown function compare
PP_0937 -0.7 -2.1 endoribonuclease G (RNAse G) compare
PP_5748 -0.7 -0.5 cytochrome c heme lyase subunit compare
PP_0711 -0.7 -1.9 putative hydrolase compare
PP_1076 -0.7 -2.2 aquaglyceroporin compare
PP_4038 -0.7 -2.8 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4917 -0.7 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1002 -0.7 -1.8 arginine/ornithine antiporter compare
PP_1822 -0.7 -2.5 conserved protein of unknown function compare
PP_4515 -0.7 -2.3 Transcriptional regulator, MarR family compare
PP_4238 -0.7 -1.0 conserved protein of unknown function compare
PP_4348 -0.7 -2.0 putative Cystathionine beta-lyase compare
PP_2745 -0.7 -1.2 Universal stress protein family compare
PP_1045 -0.7 -0.9 Type II secretion pathway protein XcpP compare
PP_3748 -0.7 -1.1 conserved hypothetical protein compare
PP_0185 -0.7 -3.0 Positive alginate biosynthesis regulatory protein compare
PP_1001 -0.7 -1.1 arginine deiminase compare
PP_4401 -0.7 -3.1 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_1439 -0.7 -0.9 conserved exported protein of unknown function compare
PP_5101 -0.7 -2.9 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_0393 -0.7 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2684 -0.7 -1.5 conserved membrane protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments