Experiment set37IT006 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.5 -3.3 conserved membrane protein of unknown function compare
PP_1829 -2.6 -3.2 Hydrolase, alpha/beta fold family compare
PP_4004 -2.6 -5.5 DNA translocase FtsK compare
PP_0874 -2.5 -2.2 conserved protein of unknown function compare
PP_5604 -2.5 -1.6 putative subtilisin-like serine protease compare
PP_0025 -2.3 -1.6 hypothetical protein compare
PP_4943 -2.3 -2.7 putative Glycosyl transferase compare
PP_4265 -2.2 -1.5 DNA-binding transcriptional dual regulator compare
PP_5717 -2.2 -2.6 conserved protein of unknown function compare
PP_4874 -2.1 -1.6 50S ribosomal protein L9 compare
PP_3999 -2.1 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5475 -2.1 -1.6 conserved protein of unknown function compare
PP_1216 -2.0 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0872 -2.0 -6.3 Peptide chain release factor 3 compare
PP_0640 -2.0 -3.1 conserved protein of unknown function compare
PP_1074 -1.9 -2.5 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4120 -1.9 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_2378 -1.9 -2.2 Fe/S biogenesis protein NfuA compare
PP_2504 -1.8 -2.2 putative tautomerase K2 compare
PP_0801 -1.8 -1.3 conserved exported protein of unknown function compare
PP_3052 -1.8 -1.4 conserved protein of unknown function compare
PP_2371 -1.8 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0691 -1.8 -1.2 Glutamate 5-kinase compare
PP_2402 -1.7 -2.6 putative Sensor histidine kinase compare
PP_5327 -1.7 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_0276 -1.7 -1.3 Transcriptional regulator, Cro/CI family compare
PP_1930 -1.7 -4.6 arsenic resistance transcriptional regulator compare
PP_t29 -1.7 -2.5 tRNA-Ala compare
PP_0274 -1.6 -1.6 putative transcriptional regulator containing HTH domain compare
PP_2737 -1.6 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0856 -1.6 -2.6 conserved lipoprotein of unknown function compare
PP_1353 -1.6 -2.8 conserved membrane protein of unknown function compare
PP_1892 -1.5 -3.6 conserved protein of unknown function compare
PP_0001 -1.5 -1.4 probable chromosome-partitioning protein compare
PP_2999 -1.5 -1.4 Glyoxalase family protein compare
PP_3098 -1.5 -1.0 conserved protein of unknown function compare
PP_5230 -1.4 -3.4 Tyrosine recombinase XerC compare
PP_4268 -1.4 -1.6 nucleoid-associated broad specificity regulator compare
PP_2336 -1.4 -3.0 aconitate hydratase 1 compare
PP_5095 -1.4 -1.0 pyrroline-5-carboxylate reductase compare
PP_2740 -1.4 -2.0 Transcriptional regulator, MerR family compare
PP_5114 -1.4 -1.9 putative adenine methyltransferase compare
PP_4944 -1.4 -3.1 Carbamoyltransferase compare
PP_5706 -1.4 -2.2 Sec translocation complex - SecG subunit compare
PP_4214 -1.3 -3.4 pyoverdine biosynthesis related protein compare
PP_4696 -1.3 -3.5 Nitrogen regulation protein NR(I) compare
PP_5328 -1.3 -0.9 putative phosphate transport system permease protein compare
PP_0781 -1.3 -3.1 conserved protein of unknown function compare
PP_2379 -1.3 -3.2 putative cytochrome oxidase biogenesis protein compare
PP_4620 -1.3 -6.5 Fumarylacetoacetase compare
PP_2568 -1.3 -1.2 Ring-cleaving dioxygenase compare
PP_2615 -1.2 -2.1 hemolysin-coregulated protein compare
PP_2409 -1.2 -3.5 cobalt-zinc-cadmium resistance protein compare
PP_0834 -1.2 -1.5 Sec translocation complex subunit YajC compare
PP_1664 -1.2 -2.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1237 -1.2 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3339 -1.2 -1.8 conserved exported protein of unknown function compare
PP_0065 -1.2 -2.1 NAD-binding component of TrK potassium transporter compare
PP_0401 -1.2 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1658 -1.2 -3.1 conserved protein of unknown function compare
PP_4224 -1.2 -3.0 Sensor histidine kinase compare
PP_1489 -1.2 -1.5 CheW domain protein compare
PP_2510 -1.2 -1.2 conserved protein of unknown function compare
PP_4914 -1.2 -2.8 putative phytase-like protein compare
PP_1646 -1.2 -2.7 putative Thioredoxin compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0910 -1.1 -4.5 conserved exported protein of unknown function compare
PP_1774 -1.1 -2.1 conserved exported protein of unknown function compare
PP_4143 -1.1 -3.5 conserved protein of unknown function compare
PP_2337 -1.1 -1.6 aconitate isomerase compare
PP_0760 -1.1 -2.2 conserved membrane protein of unknown function compare
PP_4124 -1.1 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_4880 -1.1 -5.9 exoribonuclease R compare
PP_3637 -1.1 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4227 -1.1 -1.2 conserved protein of unknown function compare
PP_4058 -1.1 -5.2 1,4-alpha-glucan branching enzyme compare
PP_2793 -1.1 -1.8 Acyl-CoA dehydrogenase family protein compare
PP_4213 -1.1 -2.1 putative dipeptidase compare
PP_5241 -1.1 -1.9 DNA-binding response regulator, LuxR family compare
PP_3286 -1.1 -3.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3185 -1.1 -1.8 Pet18 protein compare
PP_4766 -1.1 -5.1 ATP-dependent RNA helicase compare
PP_4121 -1.1 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_5658 -1.0 -2.4 protein of unknown function compare
PP_2122 -1.0 -1.9 molybdenum cofactor biosynthesis protein B compare
PP_1001 -1.0 -2.1 arginine deiminase compare
PP_1198 -1.0 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3967 -1.0 -2.4 MutT/nudix family protein compare
PP_2820 -1.0 -1.9 HTH-type transcriptional regulator nfxB compare
PP_3804 -1.0 -3.6 conserved exported protein of unknown function compare
PP_1000 -1.0 -2.6 ornithine carbamoyltransferase, catabolic compare
PP_5015 -1.0 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0184 -1.0 -3.5 Argininosuccinate lyase compare
PP_2132 -1.0 -2.0 Universal stress protein compare
PP_2581 -1.0 -1.3 conserved protein of unknown function compare
PP_5582 -1.0 -1.0 conserved protein of unknown function compare
PP_3043 -0.9 -1.1 conserved protein of unknown function compare
PP_t10 -0.9 -1.1 tRNA-Pro compare
PP_3766 -0.9 -1.9 Lactoylglutathione lyase compare
PP_0794 -0.9 -2.9 1-phosphofructokinase monomer compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_2776 -0.9 -3.0 Homocysteine S-methyltransferase family protein compare
PP_0735 -0.9 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_1362 -0.9 -2.1 pyruvate kinase II compare
PP_2442 -0.9 -1.2 conserved protein of unknown function, DUF480 family compare
PP_3833 -0.9 -2.3 Response regulator compare
PP_0324 -0.9 -3.6 sarcosine oxidase subunit delta compare
PP_0313 -0.9 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_1629 -0.9 -4.1 Protein RecA compare
PP_3241 -0.9 -0.7 conserved exported protein of unknown function compare
PP_4129 -0.9 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4403 -0.9 -3.9 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_3614 -0.9 -1.4 conserved membrane protein of unknown function compare
PP_0283 -0.9 -2.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_4054 -0.9 -1.4 conserved protein of unknown function compare
PP_2806 -0.9 -3.1 Transcriptional regulator, TetR family compare
PP_1569 -0.9 -1.8 conserved protein of unknown function compare
PP_1224 -0.9 -2.9 periplasmic subunit of the TolQRA transport system compare
PP_0325 -0.9 -5.8 sarcosine oxidase subunit alpha compare
PP_1186 -0.9 -1.1 two component system DNA-binding transcriptional dual regulator compare
PP_0326 -0.9 -2.3 sarcosine oxidase subunit gamma compare
PP_2088 -0.9 -2.0 RNA polymerase sigma factor SigX compare
PP_0887 -0.9 -3.3 Sensor histidine kinase compare
PP_4392 -0.9 -4.2 chemotaxis protein methyltransferase compare
PP_4133 -0.9 -1.3 Transcriptional regulator-related protein compare
PP_0393 -0.9 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2857 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4401 -0.8 -3.7 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_0125 -0.8 -1.3 putative cytochrome c-type protein compare
PP_4997 -0.8 -0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3411 -0.8 -1.0 conserved protein of unknown function compare
PP_1344 -0.8 -1.2 conserved protein of unknown function compare
PP_4340 -0.8 -1.5 response regulator for chemotactic signal transduction compare
PP_0508 -0.8 -1.5 conserved exported protein of unknown function compare
PP_5705 -0.8 -0.6 protein of unknown function compare
PP_3803 -0.8 -3.8 putative Cation ABC transporter, permease protein compare
PP_0214 -0.8 -2.6 4-aminobutyrate aminotransferase compare
PP_1041 -0.8 -1.3 twin arginine protein export complex subunit compare
PP_3233 -0.8 -1.9 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_4941 -0.8 -3.0 conserved exported protein of unknown function compare
PP_3505 -0.8 -1.1 conserved protein of unknown function compare
PP_1004 -0.8 -2.0 conserved protein of unknown function compare
PP_4811 -0.8 -2.4 Gamma-glutamyl phosphate reductase compare
PP_5204 -0.8 -2.3 conserved protein of unknown function compare
PP_4722 -0.8 -1.8 Transcription elongation factor GreA compare
PP_5310 -0.8 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_1428 -0.8 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_0082 -0.8 -2.4 tryptophan synthase alpha chain compare
PP_4700 -0.8 -1.3 pantothenate synthetase compare
PP_2159 -0.8 -1.6 Copper-binding protein, plastocyanin/azurin family compare
PP_4379 -0.8 -2.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4504 -0.8 -1.0 conserved exported protein of unknown function compare
PP_2900 -0.8 -1.4 conserved protein of unknown function compare
PP_4015 -0.8 -2.2 HflD-like high frequency lysogenization protein compare
PP_0293 -0.8 -0.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3040 -0.8 -0.8 Pyocin R2_PP, holin compare
PP_3551 -0.8 -1.3 DNA-binding response regulator, LuxR family compare
PP_3346 -0.8 -1.5 Nickel transporter ATP-binding protein compare
PP_3378 -0.8 -1.2 putative 2-ketogluconokinase compare
PP_2217 -0.8 -0.9 enoyl-CoA hydratase compare
PP_1605 -0.8 -1.6 Ribonuclease HII compare
PP_1088 -0.8 -4.9 Argininosuccinate synthase compare
PP_5558 -0.8 -1.7 putative transcriptional xre family of phage origin compare
PP_4074 -0.8 -2.2 conserved protein of unknown function compare
PP_4981 -0.8 -1.4 polyisoprene-binding protein, acidic stress response factor compare
PP_1322 -0.8 -1.2 putative Lipoprotein compare
PP_4254 -0.8 -0.9 conserved protein of unknown function compare
PP_1912 -0.8 -2.0 Phosphate acyltransferase compare
PP_3539 -0.8 -1.4 putative Transcriptional regulator compare
PP_2348 -0.8 -2.6 Sensor histidine kinase compare
PP_4789 -0.8 -3.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4917 -0.8 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2333 -0.8 -2.2 GntR family transcriptional regulator compare
PP_0512 -0.8 -1.2 hypothetical protein compare
PP_1009 -0.8 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4210 -0.8 -4.1 pyoverdine efflux carrier and ATP binding protein compare
PP_3307 -0.7 -0.9 conserved protein of unknown function compare
PP_2397 -0.7 -2.4 EF hand domain protein compare
PP_1828 -0.7 -2.5 conserved protein of unknown function compare
PP_1763 -0.7 -1.7 putative oxidoreductase compare
PP_5007 -0.7 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4217 -0.7 -5.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1757 -0.7 -2.0 DNA-binding transcriptional dual regulator compare
PP_4131 -0.7 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_2197 -0.7 -1.8 conserved exported protein of unknown function compare
PP_2747 -0.7 -0.8 conserved protein of unknown function compare
PP_1439 -0.7 -0.9 conserved exported protein of unknown function compare
PP_1739 -0.7 -1.3 conserved membrane protein of unknown function compare
PP_4616 -0.7 -1.8 conserved protein of unknown function compare
PP_0565 -0.7 -2.6 putative enzyme compare
PP_0217 -0.7 -2.7 delta-9 fatty acid desaturase compare
PP_2328 -0.7 -2.2 Phosphoadenosine phosphosulfate reductase compare
PP_3730 -0.7 -1.2 Transcriptional regulatory protein AruR compare
PP_0951 -0.7 -3.3 Ribosome hibernation promoting factor compare
PP_1898 -0.7 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4684 -0.7 -3.3 conserved protein of unknown function with kinase-like domain compare
PP_3409 -0.7 -1.3 putative Cobalamin biosynthesis protein cobE compare
PP_4555 -0.7 -1.6 conserved protein of unknown function compare
PP_0122 -0.7 -2.2 conserved exported protein of unknown function compare
PP_1217 -0.7 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments