Experiment set37IT005 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PP_1468 -5.5 -3.1 Tyrosine recombinase XerD compare
PP_3105 -4.9 -2.4 conserved membrane protein of unknown function compare
PP_4814 -4.8 -2.7 ATP-dependent protease La domain protein compare
PP_5701 -4.5 -2.3 conserved protein of unknown function compare
PP_3110 -4.4 -2.2 protein of unknown function compare
PP_0874 -4.4 -2.2 conserved protein of unknown function compare
PP_4260 -4.2 -2.9 conserved protein of unknown function compare
PP_5017 -4.2 -1.2 Sec-independent protein translocase protein TatB compare
PP_3447 -4.2 -1.2 conserved membrane protein of unknown function compare
PP_2903 -4.2 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0048 -4.2 -1.2 conserved protein of unknown function compare
PP_1269 -4.2 -1.2 Universal stress protein family compare
PP_0801 -4.2 -1.2 conserved exported protein of unknown function compare
PP_5508 -4.0 -1.1 conserved protein of unknown function compare
PP_4069 -3.9 -3.0 conserved protein of unknown function compare
PP_4213 -3.8 -2.6 putative dipeptidase compare
PP_2330 -3.7 -2.6 conserved protein of unknown function compare
PP_4227 -3.7 -1.5 conserved protein of unknown function compare
PP_0566 -3.6 -1.0 translation-related factor compare
PP_1826 -3.4 -2.1 Hydrolase, isochorismatase family compare
PP_5198 -3.3 -2.3 conserved protein of unknown function compare
PP_2976 -3.3 -1.3 putative transposase compare
PP_4701 -3.2 -0.9 glucose-6-phosphate isomerase compare
PP_2568 -3.2 -1.3 Ring-cleaving dioxygenase compare
PP_2121 -3.2 -2.0 putative Lipoprotein compare
PP_4835 -3.2 -2.3 conserved exported protein of unknown function compare
PP_2715 -3.1 -4.4 ArsH protein compare
PP_2503 -3.0 -2.2 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2107 -2.9 -1.2 conserved protein of unknown function compare
PP_1568 -2.9 -1.2 conserved protein of unknown function compare
PP_2402 -2.9 -2.0 putative Sensor histidine kinase compare
PP_0872 -2.8 -3.9 Peptide chain release factor 3 compare
PP_1410 -2.8 -1.1 conserved protein of unknown function compare
PP_4942 -2.8 -3.3 conserved protein of unknown function compare
PP_2306 -2.8 -1.4 conserved exported protein of unknown function compare
PP_1697 -2.8 -2.3 transcriptional regulator, GntR family compare
PP_4517 -2.8 -2.5 conserved protein of unknown function compare
PP_3374 -2.8 -3.5 conserved protein of unknown function compare
PP_4004 -2.8 -4.4 DNA translocase FtsK compare
PP_0888 -2.7 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2371 -2.7 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1930 -2.6 -3.3 arsenic resistance transcriptional regulator compare
PP_4952 -2.6 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2379 -2.6 -4.6 putative cytochrome oxidase biogenesis protein compare
PP_2900 -2.6 -2.1 conserved protein of unknown function compare
PP_4555 -2.6 -2.8 conserved protein of unknown function compare
PP_4837 -2.6 -3.1 conserved protein of unknown function compare
PP_2898 -2.6 -1.7 conserved exported protein of unknown function compare
PP_2747 -2.4 -1.3 conserved protein of unknown function compare
PP_1938 -2.4 -1.7 conserved protein of unknown function compare
PP_4199 -2.4 -0.9 putative Lipoprotein compare
PP_3455 -2.3 -5.4 Multidrug efflux RND membrane fusion protein compare
PP_1142 -2.3 -1.1 conserved protein of unknown function compare
PP_3332 -2.3 -2.1 putative cytochrome c-type protein compare
PP_1553 -2.3 -2.3 conserved protein of unknown function compare
PP_5575 -2.3 -1.5 conserved protein of unknown function compare
PP_0846 -2.3 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_2433 -2.2 -2.2 conserved protein of unknown function compare
PP_1508 -2.1 -2.9 conserved protein of unknown function compare
PP_t29 -2.1 -1.9 tRNA-Ala compare
PP_2932 -2.1 -5.0 Amidase family protein compare
PP_2291 -2.1 -1.7 conserved protein of unknown function compare
PP_5229 -2.1 -3.5 conserved protein of unknown function compare
PP_0311 -2.1 -4.2 putative dimethylglycine dehydrogenase subunit compare
PP_4207 -2.0 -2.2 conserved protein of unknown function compare
PP_4196 -2.0 -1.7 conserved exported protein of unknown function compare
PP_2189 -2.0 -1.8 conserved protein of unknown function compare
PP_2748 -2.0 -2.2 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1829 -2.0 -1.8 Hydrolase, alpha/beta fold family compare
PP_4133 -2.0 -1.5 Transcriptional regulator-related protein compare
PP_4546 -2.0 -2.7 ATP-dependent helicase HrpA compare
PP_0326 -2.0 -2.3 sarcosine oxidase subunit gamma compare
PP_1892 -2.0 -1.8 conserved protein of unknown function compare
PP_1381 -1.9 -1.0 4-carboxymuconolactone decarboxylase compare
PP_4782 -1.9 -3.6 Phosphomethylpyrimidine kinase compare
PP_2899 -1.9 -1.0 conserved exported protein of unknown function compare
PP_5717 -1.9 -1.8 conserved protein of unknown function compare
PP_1824 -1.9 -1.3 Smr domain protein compare
PP_1691 -1.9 -2.5 conserved protein of unknown function compare
PP_1217 -1.9 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5448 -1.9 -2.4 conserved protein of unknown function compare
PP_0891 -1.9 -3.1 conserved exported protein of unknown function compare
PP_4254 -1.8 -1.1 conserved protein of unknown function compare
PP_1293 -1.8 -1.4 molybdopterin synthase small subunit compare
PP_4966 -1.8 -1.8 transcriptional regulator of methionine metabolism compare
PP_0062 -1.8 -2.9 3-methyl-adenine DNA glycosylase I compare
PP_4722 -1.8 -3.4 Transcription elongation factor GreA compare
PP_5007 -1.8 -2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4875 -1.8 -3.8 conserved membrane protein of unknown function compare
PP_1001 -1.8 -1.7 arginine deiminase compare
PP_2181 -1.8 -2.1 Transcriptional regulator, Cro/CI family compare
PP_2337 -1.7 -1.9 aconitate isomerase compare
PP_1362 -1.7 -2.8 pyruvate kinase II compare
PP_1055 -1.7 -1.2 Type II secretion pathway protein GspN compare
PP_5350 -1.7 -3.4 Transcriptional regulator, RpiR family compare
PP_3123 -1.7 -3.1 acetoacetyl CoA-transferase (subunit B) compare
PP_1186 -1.7 -1.6 two component system DNA-binding transcriptional dual regulator compare
PP_2302 -1.7 -4.2 DNA-binding, ATP-dependent protease compare
PP_4444 -1.7 -2.7 transposase compare
PP_2214 -1.6 -3.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4265 -1.6 -1.1 DNA-binding transcriptional dual regulator compare
PP_4591 -1.6 -2.9 Ribonuclease D compare
PP_3899 -1.6 -1.1 conserved protein of unknown function, hicB family compare
PP_1002 -1.6 -3.1 arginine/ornithine antiporter compare
PP_0770 -1.6 -2.2 PemI-like protein compare
PP_0959 -1.6 -1.5 phospholipid ABC transporter compare
PP_5604 -1.6 -1.2 putative subtilisin-like serine protease compare
PP_2137 -1.6 -2.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_2336 -1.6 -1.9 aconitate hydratase 1 compare
PP_3258 -1.6 -1.6 conserved protein of unknown function compare
PP_5168 -1.6 -1.5 sulfate/thiosulfate import ATP-binding protein compare
PP_3036 -1.6 -2.4 conserved protein of unknown function compare
PP_1552 -1.6 -2.6 putative Phage replication protein compare
PP_4569 -1.5 -1.6 conserved protein of unknown function compare
PP_4917 -1.5 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1008 -1.5 -1.0 RNA polymerase subunit sigma-24 compare
PP_4204 -1.5 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4696 -1.5 -3.2 Nitrogen regulation protein NR(I) compare
PP_3806 -1.5 -1.7 Hydrolase, isochorismatase family compare
PP_3892 -1.5 -1.0 conserved protein of unknown function compare
PP_2145 -1.5 -2.2 beta-N-acetylglucosaminidase compare
PP_4482 -1.5 -1.9 Transcriptional regulator, AraC family compare
PP_2132 -1.5 -2.3 Universal stress protein compare
PP_1097 -1.5 -1.0 Methionine--tRNA ligase compare
PP_3942 -1.5 -2.4 maleate isomerase compare
PP_2152 -1.5 -1.7 glycerophosphoryl diester phosphodiesterase compare
PP_3539 -1.5 -0.9 putative Transcriptional regulator compare
PP_1489 -1.5 -1.4 CheW domain protein compare
PP_0951 -1.4 -3.3 Ribosome hibernation promoting factor compare
PP_5557 -1.4 -1.5 protein of unknown function compare
PP_3211 -1.4 -1.8 ABC transporter, ATP-binding protein compare
PP_2416 -1.4 -1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_4620 -1.4 -3.4 Fumarylacetoacetase compare
PP_3519 -1.4 -0.8 putative Lipoprotein compare
PP_4065 -1.4 -3.7 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_0711 -1.4 -2.7 putative hydrolase compare
PP_4008 -1.4 -4.2 ATP-dependent serine protease compare
PP_3930 -1.4 -1.0 conserved exported protein of unknown function compare
PP_1716 -1.4 -1.8 Transcriptional regulator, Cro/CI family compare
PP_3094 -1.4 -2.2 conserved exported protein of unknown function compare
PP_2999 -1.4 -1.0 Glyoxalase family protein compare
PP_3081 -1.4 -1.6 conserved protein of unknown function compare
PP_3563 -1.4 -2.3 conserved exported protein of unknown function compare
PP_5100 -1.4 -1.0 dITP/XTP pyrophosphatase compare
PP_4215 -1.4 -3.1 pyoverdine biosynthesis related protein compare
PP_1876 -1.4 -1.8 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1635 -1.4 -1.7 DNA-binding response regulator compare
PP_0593 -1.4 -0.7 putative ribosome-binding factor compare
PP_1390 -1.4 -1.2 conserved exported protein of unknown function compare
PP_1763 -1.4 -1.7 putative oxidoreductase compare
PP_4502 -1.4 -2.2 putative enzyme compare
PP_1487 -1.3 -2.5 conserved protein of unknown function compare
PP_3380 -1.3 -2.5 2-ketogluconate utilization repressor compare
PP_1062 -1.3 -1.3 MutT/nudix family protein compare
PP_3766 -1.3 -1.5 Lactoylglutathione lyase compare
PP_1419 -1.3 -3.2 tricarboxylate-specific outer membrane porin compare
PP_1187 -1.3 -3.7 sensor protein compare
PP_2442 -1.3 -0.9 conserved protein of unknown function, DUF480 family compare
PP_2959 -1.3 -2.3 Alkylhydroperoxidase AhpD domain protein compare
PP_5586 -1.3 -1.7 exported protein of unknown function compare
PP_2475 -1.3 -2.6 Transcriptional regulator, TetR family compare
PP_0292 -1.3 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1454 -1.3 -1.7 conserved protein of unknown function compare
PP_2378 -1.3 -1.5 Fe/S biogenesis protein NfuA compare
PP_0235 -1.3 -1.7 Peroxidase compare
PP_5441 -1.3 -1.9 protein of unknown function compare
PP_2175 -1.3 -2.3 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0995 -1.3 -2.7 conserved membrane protein of unknown function compare
PP_2958 -1.3 -1.7 Glutaredoxin compare
PP_4403 -1.3 -3.3 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_1128 -1.3 -1.8 OmpA family protein compare
PP_0293 -1.3 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3904 -1.3 -1.1 conserved protein of unknown function compare
PP_0313 -1.3 -1.1 putative electron transfer flavoprotein beta subunit compare
PP_2802 -1.3 -3.5 Amino acid permease family protein compare
PP_5528 -1.2 -1.0 conserved protein of unknown function compare
PP_2672 -1.2 -1.4 Transcriptional activator protein ExaE compare
PP_1096 -1.2 -1.1 putative electron transport complex protein compare
PP_3649 -1.2 -3.0 Transcriptional regulator, GntR family compare
PP_0439 -1.2 -2.4 conserved protein of unknown function compare
PP_2122 -1.2 -1.7 molybdenum cofactor biosynthesis protein B compare
PP_2247 -1.2 -1.9 putative Endoribonuclease compare
PP_2773 -1.2 -0.8 conserved protein of unknown function compare
PP_2441 -1.2 -1.5 conserved protein of unknown function compare
PP_2766 -1.2 -2.0 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_1632 -1.2 -0.8 conserved protein of unknown function compare
PP_0377 -1.2 -1.2 coenzyme PQQ synthesis protein D compare
PP_2217 -1.2 -1.6 enoyl-CoA hydratase compare
PP_0673 -1.2 -0.9 conserved protein of unknown function compare
PP_4720 -1.2 -0.9 putative RNA binding protein compare
PP_2640 -1.2 -1.2 Acetyltransferase, GNAT family compare
PP_3748 -1.2 -1.3 conserved hypothetical protein compare
PP_4159 -1.2 -1.1 Potassium-transporting ATPase C chain compare
PP_5327 -1.2 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_1926 -1.2 -1.4 putative phosphotyrosine-protein phosphatase compare
PP_3064 -1.2 -1.0 Phage tail protein compare
PP_0513 -1.2 -1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4627 -1.2 -1.9 transcriptional regulator, LysR family compare
PP_2847 -1.2 -0.9 Urease accessory protein UreJ compare
PP_0691 -1.2 -0.8 Glutamate 5-kinase compare


Specific Phenotypes

For 3 genes in this experiment