Experiment set37IT005 for Pseudomonas putida KT2440
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Group: agar plate interactionMedia: LB
Culturing: Putida_ML5, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Multidrug Resistance Efflux Pumps | 1 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Phenylalanine metabolism
- Tryptophan metabolism
- Cyanoamino acid metabolism
- Benzoate degradation via CoA ligation
- Styrene degradation
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| indole-3-acetate biosynthesis III (bacteria) | 2 | 2 | 1 |
| acrylonitrile degradation I | 2 | 1 | 1 |
| indole-3-acetate biosynthesis IV (bacteria) | 2 | 1 | 1 |
| L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway) | 3 | 3 | 1 |
| putrescine biosynthesis II | 3 | 3 | 1 |
| L-arginine degradation X (arginine monooxygenase pathway) | 3 | 2 | 1 |
| superpathway of acrylonitrile degradation | 3 | 1 | 1 |
| superpathway of polyamine biosynthesis II | 8 | 5 | 1 |
| indole-3-acetate biosynthesis II | 12 | 5 | 1 |