Experiment set37IT004 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PP_3105 -5.4 -3.3 conserved membrane protein of unknown function compare
PP_5717 -3.8 -3.7 conserved protein of unknown function compare
PP_2899 -3.2 -1.6 conserved exported protein of unknown function compare
PP_4247 -3.0 -1.4 Exonuclease compare
PP_1045 -3.0 -2.0 Type II secretion pathway protein XcpP compare
PP_5017 -2.9 -1.5 Sec-independent protein translocase protein TatB compare
PP_4122 -2.9 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4004 -2.8 -7.1 DNA translocase FtsK compare
PP_2371 -2.7 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1004 -2.5 -3.0 conserved protein of unknown function compare
PP_0250 -2.4 -2.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1468 -2.3 -2.9 Tyrosine recombinase XerD compare
PP_3999 -2.3 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2378 -2.3 -1.6 Fe/S biogenesis protein NfuA compare
PP_4517 -2.3 -2.5 conserved protein of unknown function compare
PP_0393 -2.1 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1000 -2.1 -3.8 ornithine carbamoyltransferase, catabolic compare
PP_5528 -2.1 -1.7 conserved protein of unknown function compare
PP_4944 -2.1 -3.4 Carbamoyltransferase compare
PP_4265 -2.0 -1.4 DNA-binding transcriptional dual regulator compare
PP_0425 -2.0 -2.2 conserved protein of unknown function compare
PP_4213 -2.0 -2.1 putative dipeptidase compare
PP_0276 -1.9 -1.4 Transcriptional regulator, Cro/CI family compare
PP_2328 -1.9 -4.0 Phosphoadenosine phosphosulfate reductase compare
PP_4943 -1.9 -2.2 putative Glycosyl transferase compare
PP_0401 -1.8 -4.2 Ribosomal RNA small subunit methyltransferase A compare
PP_1513 -1.8 -1.7 Ribosomal RNA small subunit methyltransferase J compare
PP_3447 -1.8 -1.3 conserved membrane protein of unknown function compare
PP_1328 -1.8 -2.3 Protein MraZ compare
PP_4804 -1.8 -2.4 RlpA-like lipoprotein compare
PP_0888 -1.8 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4828 -1.7 -1.5 Precorrin-8X methylmutase compare
PP_2087 -1.7 -3.4 CmpX protein compare
PP_0566 -1.7 -1.1 translation-related factor compare
PP_2402 -1.7 -2.1 putative Sensor histidine kinase compare
PP_4952 -1.7 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4696 -1.7 -4.1 Nitrogen regulation protein NR(I) compare
PP_1344 -1.7 -1.9 conserved protein of unknown function compare
PP_5309 -1.7 -5.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0949 -1.7 -5.2 putative ATP-binding protein UPF0042 compare
PP_5327 -1.7 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_0627 -1.7 -2.6 conserved protein of unknown function compare
PP_1536 -1.6 -3.2 conserved protein of unknown function compare
PP_2309 -1.6 -1.3 conserved protein of unknown function compare
PP_2748 -1.6 -3.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_0691 -1.6 -1.1 Glutamate 5-kinase compare
PP_1428 -1.6 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_5093 -1.6 -1.4 twitching motility protein compare
PP_4058 -1.5 -7.2 1,4-alpha-glucan branching enzyme compare
PP_4271 -1.5 -0.9 conserved protein of unknown function compare
PP_2336 -1.5 -2.7 aconitate hydratase 1 compare
PP_0119 -1.5 -3.7 putative zinc uptake regulation protein ZUR compare
PP_0781 -1.5 -3.1 conserved protein of unknown function compare
PP_5582 -1.5 -1.3 conserved protein of unknown function compare
PP_4942 -1.5 -1.8 conserved protein of unknown function compare
PP_5295 -1.5 -1.3 conserved protein of unknown function compare
PP_0326 -1.5 -3.8 sarcosine oxidase subunit gamma compare
PP_1629 -1.4 -5.2 Protein RecA compare
PP_2337 -1.4 -2.2 aconitate isomerase compare
PP_4880 -1.4 -7.4 exoribonuclease R compare
PP_4273 -1.4 -1.1 Transcriptional regulator, MerR family compare
PP_1994 -1.4 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0856 -1.4 -2.1 conserved lipoprotein of unknown function compare
PP_2999 -1.4 -1.3 Glyoxalase family protein compare
PP_4546 -1.4 -3.5 ATP-dependent helicase HrpA compare
PP_5230 -1.3 -2.5 Tyrosine recombinase XerC compare
PP_4342 -1.3 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_5423 -1.3 -1.9 conserved membrane protein of unknown function compare
PP_4470 -1.3 -2.7 putative transcriptional regulator (Arc domain-containing) compare
PP_5007 -1.3 -2.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2720 -1.3 -1.2 conserved protein of unknown function compare
PP_5499 -1.3 -1.5 conserved protein of unknown function compare
PP_5106 -1.3 -3.2 conserved inner membrane protein compare
PP_3359 -1.3 -2.4 putative Hydroxycinnamic acid degradation regulator compare
PP_3876 -1.3 -1.5 conserved protein of unknown function compare
PP_1322 -1.3 -1.7 putative Lipoprotein compare
PP_3892 -1.2 -1.2 conserved protein of unknown function compare
PP_4121 -1.2 -2.6 NADH-quinone oxidoreductase subunit C/D compare
PP_5022 -1.2 -1.7 Glutamine transport ATP-binding protein GlnQ compare
PP_2196 -1.2 -1.9 agmatinase compare
PP_5225 -1.2 -1.1 frataxin compare
PP_0273 -1.2 -2.0 conserved protein of unknown function compare
PP_1898 -1.2 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_2203 -1.2 -1.5 conserved protein of unknown function compare
PP_0711 -1.2 -1.5 putative hydrolase compare
PP_4379 -1.2 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3094 -1.2 -2.3 conserved exported protein of unknown function compare
PP_1783 -1.2 -0.8 dTDP-glucose pyrophosphorylase compare
PP_4814 -1.2 -1.9 ATP-dependent protease La domain protein compare
PP_5456 -1.2 -1.1 conserved protein of unknown function compare
PP_2475 -1.2 -3.4 Transcriptional regulator, TetR family compare
PP_4937 -1.2 -3.4 toluene tolerance protein compare
PP_5701 -1.2 -1.1 conserved protein of unknown function compare
PP_5328 -1.1 -0.8 putative phosphate transport system permease protein compare
PP_4620 -1.1 -4.3 Fumarylacetoacetase compare
PP_2903 -1.1 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0998 -1.1 -3.7 conserved protein of unknown function compare
PP_0181 -1.1 -2.9 conserved protein of unknown function compare
PP_1664 -1.1 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4131 -1.1 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_3064 -1.1 -1.4 Phage tail protein compare
PP_1001 -1.1 -2.3 arginine deiminase compare
PP_0937 -1.1 -3.3 endoribonuclease G (RNAse G) compare
PP_2695 -1.1 -1.7 Transcriptional regulator, LysR family compare
PP_2345 -1.1 -2.3 conserved exported protein of unknown function compare
PP_0630 -1.1 -0.9 DNA gyrase inhibitor YacG compare
PP_5600 -1.1 -1.6 conserved protein of unknown function compare
PP_0125 -1.1 -2.1 putative cytochrome c-type protein compare
PP_2330 -1.1 -1.9 conserved protein of unknown function compare
PP_4054 -1.1 -1.7 conserved protein of unknown function compare
PP_4215 -1.1 -2.6 pyoverdine biosynthesis related protein compare
PP_4018 -1.1 -2.6 Acetyltransferase, GNAT family compare
PP_1002 -1.0 -3.1 arginine/ornithine antiporter compare
PP_4874 -1.0 -1.3 50S ribosomal protein L9 compare
PP_5507 -1.0 -1.8 protein of unknown function compare
PP_0195 -1.0 -1.5 conserved protein of unknown function compare
PP_3247 -1.0 -1.7 Transporter, bile acid/Na+ symporter family compare
PP_2138 -1.0 -3.3 conserved protein of unknown function compare
PP_4799 -1.0 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4792 -1.0 -1.9 conserved exported protein of unknown function compare
PP_4008 -1.0 -3.2 ATP-dependent serine protease compare
PP_0872 -1.0 -3.6 Peptide chain release factor 3 compare
PP_3013 -1.0 -2.3 conserved protein of unknown function compare
PP_1442 -1.0 -1.8 conserved protein of unknown function compare
PP_1860 -1.0 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
PP_0152 -1.0 -1.3 conserved exported protein of unknown function compare
PP_5706 -1.0 -1.9 Sec translocation complex - SecG subunit compare
PP_3511 -1.0 -2.8 Branched-chain-amino-acid aminotransferase compare
PP_1228 -1.0 -4.8 Methyl-accepting chemotaxis transducer compare
PP_1729 -1.0 -1.4 conserved protein of unknown function compare
PP_1674 -0.9 -2.8 5,6-dimethylbenzimidazole synthase compare
PP_4993 -0.9 -2.6 Glutathione synthetase compare
PP_3765 -0.9 -2.0 H-NS family protein MvaT compare
PP_5114 -0.9 -1.6 putative adenine methyltransferase compare
PP_3824 -0.9 -2.1 conserved exported protein of unknown function compare
PP_1215 -0.9 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_5310 -0.9 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_5486 -0.9 -1.5 conserved protein of unknown function compare
PP_4210 -0.9 -4.4 pyoverdine efflux carrier and ATP binding protein compare
PP_4917 -0.9 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1598 -0.9 -2.1 regulatory intramembrane protein RIP zinc protease compare
PP_1404 -0.9 -1.2 conserved protein of unknown function compare
PP_2160 -0.9 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1985 -0.9 -3.3 3-isopropylmalate dehydratase large subunit compare
PP_4400 -0.9 -2.3 Bkd operon transcriptional regulator compare
PP_2306 -0.9 -1.3 conserved exported protein of unknown function compare
PP_2547 -0.9 -2.5 Transcriptional regulator, LysR family compare
PP_5591 -0.9 -3.4 conserved protein of unknown function compare
PP_1026 -0.9 -1.4 Peptidase, M23/M37 family compare
PP_2847 -0.9 -1.2 Urease accessory protein UreJ compare
PP_2441 -0.9 -1.0 conserved protein of unknown function compare
PP_0325 -0.9 -5.7 sarcosine oxidase subunit alpha compare
PP_3505 -0.9 -1.5 conserved protein of unknown function compare
PP_0184 -0.9 -3.2 Argininosuccinate lyase compare
PP_5353 -0.9 -2.6 conserved exported protein of unknown function compare
PP_3926 -0.9 -0.9 short-chain dehydrogenase compare
PP_3002 -0.9 -1.8 shikimate dehydrogenase-related enzyme compare
PP_1489 -0.9 -2.3 CheW domain protein compare
PP_4811 -0.9 -1.9 Gamma-glutamyl phosphate reductase compare
PP_3803 -0.8 -2.3 putative Cation ABC transporter, permease protein compare
PP_2122 -0.8 -1.1 molybdenum cofactor biosynthesis protein B compare
PP_1096 -0.8 -0.8 putative electron transport complex protein compare
PP_4726 -0.8 -1.7 Chaperone protein DnaJ compare
PP_4471 -0.8 -2.2 Magnesium transporter compare
PP_3528 -0.8 -3.7 putative ABC transporter, periplasmic substrate-binding protein compare
PP_5617 -0.8 -1.9 conserved protein of unknown function compare
PP_4475 -0.8 -4.1 succinylglutamate desuccinylase compare
PP_5337 -0.8 -2.7 LysR family transcriptional regulator compare
PP_1621 -0.8 -2.4 Protein-L-isoaspartate O-methyltransferase compare
PP_4982 -0.8 -1.7 putative cytochrome b561, iron-regulated compare
PP_3473 -0.8 -2.4 curli secretion and assembly outer membrane associated component compare
PP_3289 -0.8 -2.2 Acetyltransferase, GNAT family compare
PP_2348 -0.8 -2.0 Sensor histidine kinase compare
PP_4217 -0.8 -6.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0703 -0.8 -1.5 putative Transmembrane sensor compare
PP_2152 -0.8 -1.0 glycerophosphoryl diester phosphodiesterase compare
PP_0797 -0.8 -2.1 conserved protein of unknown function compare
PP_5311 -0.8 -2.9 putative signal transduction protein compare
PP_5162 -0.8 -2.3 conserved exported protein of unknown function compare
PP_4964 -0.8 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0833 -0.8 -0.6 queuine tRNA-ribosyltransferase compare
PP_5598 -0.8 -1.9 conserved protein of unknown function compare
PP_3924 -0.8 -1.4 conserved protein of unknown function compare
PP_3401 -0.8 -2.3 conserved protein of unknown function compare
PP_4981 -0.8 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_2401 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_1935 -0.8 -1.0 Transcriptional regulator, Cro/CI family compare
PP_0293 -0.8 -1.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2232 -0.8 -2.4 XRE family transcriptional regulator compare
PP_3908 -0.8 -1.3 conserved protein of unknown function compare
PP_0770 -0.8 -1.0 PemI-like protein compare
PP_1609 -0.8 -2.0 conserved protein of unknown function compare
PP_1088 -0.8 -4.2 Argininosuccinate synthase compare
PP_1131 -0.8 -2.1 outer membrane lipoprotein compare
PP_3357 -0.8 -2.3 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_2503 -0.8 -1.4 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_5469 -0.8 -2.6 putative SAM-dependent methyltransferase compare
PP_3797 -0.8 -2.1 conserved membrane protein of unknown function compare
PP_2658 -0.8 -1.9 phosphate ABC transporter compare
PP_1380 -0.8 -2.2 3-oxoadipate enol-lactonase 2 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction experiments