Experiment set36S1087 for Pseudomonas simiae WCS417
FRSphage
Group: phageMedia: + FRSphage
Culturing: fluoroDangl_ML3b
By: Milo-Katie on 8-Jan-26
Specific Phenotypes
For 4 genes in this experiment
For phage FRSphage in Pseudomonas simiae WCS417
For phage FRSphage across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Biotin biosynthesis | 2 |
| Siderophore Pyoverdine | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Biotin metabolism
- Ubiquinone and menaquinone biosynthesis
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 8-amino-7-oxononanoate biosynthesis III | 2 | 1 | 1 |
| 8-amino-7-oxononanoate biosynthesis II | 2 | 1 | 1 |
| biotin biosynthesis from 8-amino-7-oxononanoate I | 4 | 4 | 1 |
| 8-amino-7-oxononanoate biosynthesis IV | 5 | 4 | 1 |
| biotin biosynthesis II | 6 | 4 | 1 |
| biotin biosynthesis I | 15 | 14 | 2 |
| 8-amino-7-oxononanoate biosynthesis I | 11 | 10 | 1 |