Experiment set36IT096 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PP_1215 -5.8 -3.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_3105 -4.7 -3.0 conserved membrane protein of unknown function compare
PP_t12 -4.1 -1.6 tRNA-Thr compare
PP_5717 -4.1 -2.8 conserved protein of unknown function compare
PP_0566 -3.9 -1.5 translation-related factor compare
PP_2370 -3.4 -2.3 conserved protein of unknown function compare
PP_0856 -3.3 -2.3 conserved lipoprotein of unknown function compare
PP_1237 -2.9 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0999 -2.9 -5.2 carbamate kinase compare
PP_4268 -2.9 -1.5 nucleoid-associated broad specificity regulator compare
PP_4532 -2.9 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0691 -2.9 -2.0 Glutamate 5-kinase compare
PP_t10 -2.7 -1.4 tRNA-Pro compare
PP_5604 -2.7 -2.1 putative subtilisin-like serine protease compare
PP_4004 -2.6 -7.0 DNA translocase FtsK compare
PP_2510 -2.6 -1.6 conserved protein of unknown function compare
PP_4247 -2.5 -1.8 Exonuclease compare
PP_1571 -2.4 -2.9 conserved protein of unknown function compare
PP_5706 -2.3 -2.8 Sec translocation complex - SecG subunit compare
PP_4122 -2.2 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2378 -2.2 -1.5 Fe/S biogenesis protein NfuA compare
PP_4265 -2.2 -1.5 DNA-binding transcriptional dual regulator compare
PP_3378 -2.2 -1.9 putative 2-ketogluconokinase compare
PP_t11 -2.1 -1.6 tRNA-Lys compare
PP_3117 -2.1 -2.6 putative protein involved in error-prone processing of DNA lesions compare
PP_5317 -2.1 -2.8 Probable chorismate pyruvate-lyase compare
PP_0846 -2.1 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_2299 -2.1 -3.7 Trigger factor compare
PP_2402 -2.1 -2.4 putative Sensor histidine kinase compare
PP_4406 -2.0 -2.7 conserved protein of unknown function compare
PP_1000 -2.0 -5.1 ornithine carbamoyltransferase, catabolic compare
PP_1217 -2.0 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2575 -2.0 -1.8 conserved exported protein of unknown function compare
PP_4696 -2.0 -4.2 Nitrogen regulation protein NR(I) compare
PP_2826 -2.0 -4.2 Transcriptional regulator MexT compare
PP_4880 -1.9 -8.5 exoribonuclease R compare
PP_4964 -1.9 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0685 -1.9 -1.9 conserved protein of unknown function compare
PP_4620 -1.9 -6.9 Fumarylacetoacetase compare
PP_2403 -1.8 -1.2 Chemotaxis protein CheY compare
PP_5230 -1.8 -2.6 Tyrosine recombinase XerC compare
PP_5095 -1.8 -1.2 pyrroline-5-carboxylate reductase compare
PP_4700 -1.8 -2.5 pantothenate synthetase compare
PP_1468 -1.8 -2.1 Tyrosine recombinase XerD compare
PP_3926 -1.8 -1.3 short-chain dehydrogenase compare
PP_4120 -1.8 -1.2 NADH-quinone oxidoreductase subunit B compare
PP_0048 -1.8 -1.1 conserved protein of unknown function compare
PP_1216 -1.7 -4.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3999 -1.7 -3.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0001 -1.7 -2.0 probable chromosome-partitioning protein compare
PP_4693 -1.7 -4.4 RNA polymerase-binding transcription factor DksA compare
PP_5310 -1.7 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_1001 -1.7 -3.8 arginine deiminase compare
PP_2442 -1.7 -1.8 conserved protein of unknown function, DUF480 family compare
PP_4379 -1.7 -3.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5225 -1.7 -1.3 frataxin compare
PP_5327 -1.7 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_2214 -1.7 -3.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0872 -1.7 -4.9 Peptide chain release factor 3 compare
PP_4214 -1.6 -3.5 pyoverdine biosynthesis related protein compare
PP_1002 -1.6 -5.0 arginine/ornithine antiporter compare
PP_0998 -1.6 -5.2 conserved protein of unknown function compare
PP_1353 -1.6 -2.6 conserved membrane protein of unknown function compare
PP_5198 -1.6 -2.6 conserved protein of unknown function compare
PP_3318 -1.6 -1.7 conserved protein of unknown function compare
PP_2371 -1.6 -3.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4129 -1.6 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1142 -1.6 -1.2 conserved protein of unknown function compare
PP_5039 -1.6 -2.3 conserved protein of unknown function compare
PP_2520 -1.6 -2.9 conserved protein of unknown function compare
PP_4329 -1.5 -1.8 FlhB domain protein compare
PP_5453 -1.5 -1.7 conserved protein of unknown function compare
PP_4642 -1.5 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_5600 -1.5 -2.8 conserved protein of unknown function compare
PP_5248 -1.5 -1.3 putative hydrolase compare
PP_1764 -1.5 -2.1 Phosphoglycolate phosphatase 2 compare
PP_1568 -1.5 -1.2 conserved protein of unknown function compare
PP_1609 -1.5 -2.5 conserved protein of unknown function compare
PP_1654 -1.5 -1.0 cysteine synthase B compare
PP_0887 -1.5 -5.3 Sensor histidine kinase compare
PP_5519 -1.4 -2.2 conserved protein of unknown function of phage origin compare
PP_2684 -1.4 -2.6 conserved membrane protein of unknown function compare
PP_1128 -1.4 -3.2 OmpA family protein compare
PP_4130 -1.4 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1454 -1.4 -1.8 conserved protein of unknown function compare
PP_1774 -1.4 -2.3 conserved exported protein of unknown function compare
PP_2720 -1.4 -1.2 conserved protein of unknown function compare
PP_5393 -1.4 -1.2 putative metal-binding chaperone compare
PP_4058 -1.4 -6.0 1,4-alpha-glucan branching enzyme compare
PP_4799 -1.4 -1.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1208 -1.4 -1.2 conserved protein of unknown function, SlyX family compare
PP_0855 -1.4 -2.3 conserved protein of unknown function compare
PP_1714 -1.4 -3.5 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_3539 -1.4 -2.4 putative Transcriptional regulator compare
PP_3192 -1.4 -2.2 conserved protein of unknown function compare
PP_5030 -1.3 -3.4 Imidazolonepropionase compare
PP_t29 -1.3 -1.1 tRNA-Ala compare
PP_1147 -1.3 -2.9 conserved protein of unknown function compare
PP_4066 -1.3 -2.0 methylglutaconyl-CoA hydratase compare
PP_4804 -1.3 -2.6 RlpA-like lipoprotein compare
PP_3938 -1.3 -1.5 conserved protein of unknown function compare
PP_5500 -1.3 -1.7 protein of unknown function compare
PP_5007 -1.3 -2.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2302 -1.3 -3.3 DNA-binding, ATP-dependent protease compare
PP_1742 -1.3 -1.6 conserved inner membrane protein of unknown function compare
PP_0833 -1.3 -1.2 queuine tRNA-ribosyltransferase compare
PP_0003 -1.3 -2.0 16S RNA methyltransferase compare
PP_1387 -1.3 -2.7 Probable HTH-type transcriptional regulator TtgR compare
PP_4707 -1.3 -2.1 OsmY-related protein compare
PP_5748 -1.3 -0.9 cytochrome c heme lyase subunit compare
PP_1187 -1.3 -5.0 sensor protein compare
PP_2341 -1.2 -1.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1022 -1.2 -4.1 glucose 6-phosphate-1-dehydrogenase compare
PP_1097 -1.2 -1.0 Methionine--tRNA ligase compare
PP_1211 -1.2 -3.3 conserved protein of unknown function compare
PP_2217 -1.2 -1.9 enoyl-CoA hydratase compare
PP_2087 -1.2 -2.3 CmpX protein compare
PP_5295 -1.2 -1.2 conserved protein of unknown function compare
PP_4560 -1.2 -1.7 putative Ribonuclease BN compare
PP_4980 -1.2 -4.5 ATP-dependent RNA helicase compare
PP_0919 -1.2 -1.4 conserved protein of unknown function compare
PP_1829 -1.2 -1.0 Hydrolase, alpha/beta fold family compare
PP_5309 -1.2 -3.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4482 -1.2 -2.4 Transcriptional regulator, AraC family compare
PP_1082 -1.2 -2.3 bacterioferritin compare
PP_4211 -1.2 -3.4 outer membrane pyoverdine efflux protein compare
PP_1995 -1.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2793 -1.2 -1.8 Acyl-CoA dehydrogenase family protein compare
PP_4131 -1.2 -2.5 NADH-quinone oxidoreductase subunit N compare
PP_3903 -1.2 -1.3 conserved protein of unknown function compare
PP_5027 -1.2 -1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4722 -1.2 -3.1 Transcription elongation factor GreA compare
PP_4517 -1.2 -1.3 conserved protein of unknown function compare
PP_4942 -1.1 -1.4 conserved protein of unknown function compare
PP_t57 -1.1 -2.3 tRNA-Arg compare
PP_1935 -1.1 -1.1 Transcriptional regulator, Cro/CI family compare
PP_1076 -1.1 -3.7 aquaglyceroporin compare
PP_1062 -1.1 -1.6 MutT/nudix family protein compare
PP_1759 -1.1 -2.8 conserved exported protein of unknown function compare
PP_4828 -1.1 -1.0 Precorrin-8X methylmutase compare
PP_0393 -1.1 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5514 -1.1 -3.4 conserved protein of unknown function compare
PP_5140 -1.1 -2.2 Transcriptional regulator, MerR family compare
PP_4875 -1.1 -2.2 conserved membrane protein of unknown function compare
PP_0825 -1.1 -2.1 phosphonates import ATP-binding protein compare
PP_1214 -1.1 -1.9 putative transcriptional regulatory protein compare
PP_2680 -1.1 -2.5 aldehyde dehydrogenase compare
PP_4848 -1.1 -1.4 Curved DNA-binding protein compare
PP_3227 -1.1 -2.3 Transcriptional regulator, LysR family compare
PP_2379 -1.1 -2.7 putative cytochrome oxidase biogenesis protein compare
PP_3580 -1.1 -1.3 conserved protein of unknown function compare
PP_1028 -1.1 -2.3 Transcriptional regulator, LysR family compare
PP_5350 -1.1 -2.3 Transcriptional regulator, RpiR family compare
PP_0484 -1.1 -3.1 transporter of an unknown substrate compare
PP_3798 -1.1 -2.3 conserved protein of unknown function compare
PP_3211 -1.1 -1.9 ABC transporter, ATP-binding protein compare
PP_2336 -1.1 -1.6 aconitate hydratase 1 compare
PP_4215 -1.1 -3.0 pyoverdine biosynthesis related protein compare
PP_3239 -1.1 -1.7 putative cointegrate resolution protein T Tn4652 compare
PP_0694 -1.1 -3.1 conserved protein of unknown function compare
PP_2932 -1.0 -2.9 Amidase family protein compare
PP_5471 -1.0 -1.0 putative response regulator receiver protein compare
PP_4636 -1.0 -3.5 acetyl-CoA acetyltransferase compare
PP_0735 -1.0 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_4314 -1.0 -2.9 conserved protein of unknown function compare
PP_2226 -1.0 -1.9 putative K(+)/H(+) antiporter subunit F compare
PP_4121 -1.0 -1.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1826 -1.0 -1.2 Hydrolase, isochorismatase family compare
PP_4213 -1.0 -1.9 putative dipeptidase compare
PP_0266 -1.0 -3.8 Agmatine deiminase compare
PP_4545 -1.0 -3.0 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_5055 -1.0 -2.2 Sulfurtransferase compare
PP_4895 -1.0 -1.7 tRNA dimethylallyltransferase compare
PP_5329 -1.0 -1.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5533 -1.0 -1.0 conserved protein of unknown function compare
PP_4690 -1.0 -1.4 Rieske 2Fe-2S family protein compare
PP_0007 -1.0 -1.1 conserved hypothetical protein compare
PP_1783 -1.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_1734 -1.0 -2.0 Probable septum site-determining protein MinC compare
PP_0850 -1.0 -3.2 Dual-specificity RNA methyltransferase RlmN compare
PP_0891 -1.0 -3.0 conserved exported protein of unknown function compare
PP_2122 -1.0 -2.0 molybdenum cofactor biosynthesis protein B compare
PP_1190 -1.0 -1.6 conserved protein of unknown function compare
PP_5022 -1.0 -1.2 Glutamine transport ATP-binding protein GlnQ compare
PP_1012 -0.9 -3.0 DNA-binding response regulator compare
PP_1410 -0.9 -0.7 conserved protein of unknown function compare
PP_2898 -0.9 -1.9 conserved exported protein of unknown function compare
PP_3164 -0.9 -1.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1994 -0.9 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_5093 -0.9 -0.5 twitching motility protein compare
PP_0888 -0.9 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3770 -0.9 -1.2 conserved protein of unknown function compare
PP_4917 -0.9 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4793 -0.9 -1.3 conserved protein of unknown function compare
PP_2396 -0.9 -1.9 conserved exported protein of unknown function compare
PP_5652 -0.9 -1.5 conserved protein of unknown function, phage origin compare
PP_5028 -0.9 -2.0 proline iminopeptidase compare
PP_0585 -0.9 -1.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_3020 -0.9 -2.0 putative Serine/threonine protein phosphatase compare
PP_2972 -0.9 -1.2 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment