Experiment set36IT096 for Pseudomonas putida KT2440

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +8.2 44.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +7.9 30.7 Sensor protein GacS compare
PP_2889 +2.6 4.5 putative Transmembrane regulator PrtR compare
PP_4391 +2.2 9.7 flagellar basal-body rod protein FlgB compare
PP_2000 +2.1 2.0 amidophosphoribosyl transferase compare
PP_4354 +2.0 5.7 flagellar export apparatus subunit compare
PP_2231 +2.0 1.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1656 +1.9 7.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4368 +1.9 8.1 flagellar motor switch protein compare
PP_4344 +1.9 12.2 flagellar export pore protein compare
PP_4394 +1.9 9.0 flagella basal body P-ring formation protein compare
PP_4370 +1.8 5.5 Flagellar hook-basal body complex protein FliE compare
PP_4383 +1.8 7.3 Flagellar P-ring protein compare
PP_4352 +1.8 12.1 flagellin export apparatus, substrate specificity protein compare
PP_4386 +1.8 8.4 flagellar basal-body rod protein FlgF compare
PP_4384 +1.7 9.2 Flagellar L-ring protein compare
PP_4353 +1.7 9.8 Flagellar biosynthetic protein fliR compare
PP_4358 +1.7 9.0 flagellar synthesis, switching and energizing component compare
PP_4369 +1.7 10.6 Flagellar M-ring protein compare
PP_4365 +1.7 7.1 Flagellar protein FliJ compare
PP_4355 +1.7 4.1 flagellar export apparatus subunit compare
PP_4388 +1.7 11.7 Flagellar hook protein FlgE compare
PP_4373 +1.7 10.3 Transcriptional regulator FleQ compare
PP_4396 +1.7 4.9 conserved protein of unknown function compare
PP_4390 +1.6 9.5 flagellar basal-body rod protein FlgC compare
PP_4367 +1.6 6.3 Flagellar assembly protein FliH compare
PP_1655 +1.6 3.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4366 +1.6 10.8 flagellum-specific ATP synthase compare
PP_4385 +1.6 4.6 flagellar basal-body rod protein FlgG compare
PP_4361 +1.6 10.6 Flagellar hook-length control protein FliK compare
PP_4359 +1.5 7.4 Flagellar protein FliL compare
PP_4381 +1.5 10.3 Flagellar hook-associated protein FlgK compare
PP_4380 +1.5 11.9 Flagellar hook-associated protein FlgL compare
PP_1366 +1.5 2.5 Transcriptional regulator MvaT, P16 subunit compare
PP_4341 +1.5 6.7 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4378 +1.5 11.4 flagellin, filament structural protein compare
PP_5054 +1.5 2.5 glutaredoxin 3 compare
PP_4376 +1.4 10.2 flagellar filament capping protein compare
PP_5051 +1.4 4.4 conserved protein of unknown function compare
PP_4382 +1.4 7.5 Peptidoglycan hydrolase FlgJ compare
PP_1493 +1.3 3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1232 +1.3 5.3 conserved exported protein of unknown function compare
PP_0948 +1.3 2.3 Phosphocarrier protein HPr compare
PP_0574 +1.3 10.1 DNA-binding response regulator, LuxR family compare
PP_4356 +1.3 3.6 Flagellar protein FliO compare
PP_1623 +1.3 9.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_5546 +1.3 2.1 conserved protein of unknown function compare
PP_4223 +1.3 3.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4171 +1.3 7.1 conserved exported protein of unknown function compare
PP_1322 +1.2 2.4 putative Lipoprotein compare
PP_0240 +1.2 1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_0127 +1.2 3.1 Thiol:disulfide interchange protein compare
PP_4389 +1.2 7.7 Flagellar basal-body rod modification protein FlgD compare
PP_2046 +1.2 3.3 Transcriptional regulator, LysR family compare
PP_5000 +1.2 2.3 peptidase component of the ATP-dependent HslVU protease compare
PP_2903 +1.1 1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2813 +1.1 2.5 BNR domain protein compare
PP_4364 +1.1 2.7 putative Anti-sigma F factor antagonist compare
PP_0809 +1.1 6.3 disulfide bond formation protein B compare
PP_4337 +1.1 3.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5263 +1.0 4.5 GGDEF domain protein compare
PP_4904 +1.0 5.0 Flagellar motor rotation protein compare
PP_5298 +1.0 2.7 putative glutamine amidotransferase compare
PP_4377 +1.0 2.5 putative Flagellin FlaG compare
PP_3245 +1.0 1.9 conserved protein of unknown function compare
PP_4910 +1.0 1.4 conserved protein of unknown function compare
PP_4372 +1.0 2.8 Sensory box histidine kinase FleS compare
PP_5145 +1.0 7.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2794 +0.9 2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_5313 +0.9 1.8 DNA-binding protein HU-alpha compare
PP_3307 +0.9 1.7 conserved protein of unknown function compare
PP_2715 +0.9 2.3 ArsH protein compare
PP_4335 +0.9 4.5 flagellar motor protein compare
PP_4375 +0.9 4.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_1087 +0.9 5.5 Outer membrane protein, OmpA family compare
PP_4317 +0.9 2.2 conserved protein of unknown function compare
PP_4905 +0.9 4.6 Flagellar motor rotation protein compare
PP_2390 +0.9 3.6 Transcriptional regulator, LysR family compare
PP_1583 +0.9 1.7 putative Structural protein P5 compare
PP_4710 +0.9 4.9 tRNA pseudouridine 55 synthase compare
PP_0319 +0.9 1.4 conserved protein of unknown function compare
PP_5569 +0.9 2.2 protein of unknown function of phage origin compare
PP_2987 +0.9 2.2 conserved protein of unknown function compare
PP_2582 +0.9 3.8 putative Heme oxygenase compare
PP_1004 +0.9 1.5 conserved protein of unknown function compare
PP_1512 +0.9 1.6 conserved protein of unknown function compare
PP_5331 +0.9 2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_0424 +0.9 3.3 DNA-binding transcriptional dual regulator compare
PP_4989 +0.8 2.1 Protein PilJ compare
PP_4254 +0.8 2.0 conserved protein of unknown function compare
PP_2429 +0.8 1.2 putative Membrane protein compare
PP_2389 +0.8 4.1 conserved protein of unknown function compare
PP_3817 +0.8 2.3 Polyamine ABC transporter, ATP-binding protein compare
PP_5058 +0.8 3.0 Carboxy-terminal-processing protease compare
PP_3035 +0.8 2.0 conserved protein of unknown function compare
PP_0306 +0.8 1.9 conserved protein of unknown function compare
PP_2031 +0.8 2.4 conserved protein of unknown function compare
PP_4837 +0.8 1.6 conserved protein of unknown function compare
PP_2733 +0.8 3.7 conserved membrane protein of unknown function compare
PP_2073 +0.8 3.0 Acetyltransferase, GNAT family compare
PP_3978 +0.8 2.1 conserved protein of unknown function compare
PP_2030 +0.8 2.4 conserved protein of unknown function compare
PP_3380 +0.8 2.9 2-ketogluconate utilization repressor compare
PP_3726 +0.8 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_4371 +0.8 5.1 two component system AtoC DNA-binding transcriptional activator compare
PP_2737 +0.8 0.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3989 +0.8 1.7 DNA-cytosine methyltransferase compare
PP_2740 +0.8 0.9 Transcriptional regulator, MerR family compare
PP_5232 +0.8 1.8 conserved protein of unknown function compare
PP_1628 +0.8 2.1 NMN amidohydrolase compare
PP_5448 +0.8 1.7 conserved protein of unknown function compare
PP_1644 +0.7 2.5 NAD(P)H dehydrogenase (quinone) compare
PP_2503 +0.7 1.4 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_5705 +0.7 1.7 protein of unknown function compare
PP_4336 +0.7 3.7 flagellar motor rotation protein compare
PP_3810 +0.7 1.7 conserved protein of unknown function compare
PP_0848 +0.7 0.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0063 +0.7 3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2322 +0.7 2.4 Major outer membrane lipoprotein compare
PP_5457 +0.7 2.3 conserved protein of unknown function compare
PP_2032 +0.7 3.1 putative ATPase compare
PP_4660 +0.7 2.0 Transcriptional regulator, LysR family compare
PP_2773 +0.7 1.1 conserved protein of unknown function compare
PP_2864 +0.7 1.5 conserved protein of unknown function compare
PP_2695 +0.7 1.9 Transcriptional regulator, LysR family compare
PP_3052 +0.7 0.9 conserved protein of unknown function compare
PP_2668 +0.7 1.8 ABC efflux transporter, ATP-binding protein compare
PP_3460 +0.7 1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2658 +0.7 1.5 phosphate ABC transporter compare
PP_3222 +0.7 2.1 ABC transporter, permease protein compare
PP_2857 +0.7 0.6 conserved exported protein of unknown function compare
PP_2003 +0.7 2.3 conserved protein of unknown function compare
PP_0945 +0.7 1.4 conserved protein of unknown function compare
PP_2414 +0.7 1.0 conserved exported protein of unknown function compare
PP_5491 +0.7 0.8 conserved protein of unknown function with SEC-C motif domain compare
PP_4054 +0.7 0.9 conserved protein of unknown function compare
PP_3480 +0.7 1.3 conserved protein of unknown function compare
PP_0152 +0.7 1.5 conserved exported protein of unknown function compare
PP_5258 +0.7 2.5 L-piperidine-6-carboxylate dehydrogenase compare
PP_2749 +0.7 2.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5475 +0.7 0.5 conserved protein of unknown function compare
PP_5640 +0.7 1.5 conserved protein of unknown function compare
PP_0355 +0.7 1.5 Response regulator compare
PP_2163 +0.7 2.1 VacJ lipoprotein compare
PP_5008 +0.7 0.5 Poly granule-associated protein compare
PP_1812 +0.7 0.9 conserved protein of unknown function compare
PP_5202 +0.7 1.1 putative cell division protein compare
PP_0434 +0.7 2.0 Anhydro-N-acetylmuramic acid kinase compare
PP_5109 +0.6 2.8 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_2365 +0.6 1.8 Transcriptional regulator, AraC family compare
PP_4870 +0.6 1.6 Azurin compare
PP_5441 +0.6 1.5 protein of unknown function compare
PP_5698 +0.6 2.2 conserved exported protein of unknown function compare
PP_2359 +0.6 2.6 putative Type 1 pili subunit CsuA/B protein compare
PP_0789 +0.6 1.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0151 +0.6 0.8 conserved exported protein of unknown function compare
PP_3322 +0.6 2.5 porphobilinogen synthase (delta-aminolevulinic acid dehydratase) compare
PP_1036 +0.6 3.6 membrane-bound lytic murein transglycosylase F compare
PP_1413 +0.6 2.6 Uracil-DNA glycosylase compare
PP_4808 +0.6 1.3 23S rRNA m3psi1915 methyltransferase compare
PP_0524 +0.6 2.7 putative Periplasmic cobalamin-binding protein HutB compare
PP_1109 +0.6 4.5 Transcriptional regulator, GntR family compare
PP_2539 +0.6 2.1 Transcriptional regulator, LysR family compare
PP_1521 +0.6 1.9 conserved protein of unknown function compare
PP_0367 +0.6 2.3 conserved protein of unknown function compare
PP_5057 +0.6 2.9 Peptidase, M23/M37 family compare
PP_0406 +0.6 1.3 Nucleotidyltransferase family protein compare
PP_2400 +0.6 2.7 conserved protein of unknown function compare
PP_3384 +0.6 1.6 gluconate 2-dehydrogenase gamma subunit compare
PP_0182 +0.6 2.0 conserved protein of unknown function compare
PP_0164 +0.6 1.8 conserved protein of unknown function compare
PP_0976 +0.6 1.8 Ribosomal RNA large subunit methyltransferase F compare
PP_1586 +0.6 1.9 putative Killer protein compare
PP_5599 +0.6 3.7 putative transcriptional regulator, LysR family compare
PP_4874 +0.6 0.6 50S ribosomal protein L9 compare
PP_5456 +0.6 1.0 conserved protein of unknown function compare
PP_3749 +0.6 2.0 conserved protein of unknown function compare
PP_1824 +0.6 0.9 Smr domain protein compare
PP_4734 +0.6 2.8 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_1111 +0.6 2.7 putative Synthetase compare
PP_5658 +0.6 1.9 protein of unknown function compare
PP_5274 +0.6 0.8 conserved protein of unknown function compare
PP_2757 +0.6 2.9 putative Sugar-binding protein compare
PP_1055 +0.6 0.9 Type II secretion pathway protein GspN compare
PP_3336 +0.6 1.3 conserved protein of unknown function compare
PP_1892 +0.6 1.8 conserved protein of unknown function compare
PP_1646 +0.6 1.5 putative Thioredoxin compare
PP_0914 +0.6 3.1 GGDEF domain protein compare
PP_0575 +0.6 1.8 conserved membrane protein of unknown function compare
PP_1236 +0.6 1.7 putative Glycine cleavage system transcriptional repressor compare
PP_3365 +0.6 0.7 Acetolactate synthase compare
PP_3444 +0.6 1.4 Glyoxalase family protein compare
PP_1999 +0.6 0.9 membrane protein required for colicin V production compare
PP_1775 +0.6 3.1 Metallo-beta-lactamase family protein compare
PP_2090 +0.6 2.3 Uroporphyrinogen-III C-methyltransferase compare
PP_2054 +0.6 1.8 putative DNA-binding transcriptional regulator compare
PP_3037 +0.6 1.2 C4-type zinc finger protein, DksA/TraR family compare
PP_2677 +0.6 0.8 conserved exported protein of unknown function compare
PP_3738 +0.6 1.6 putative Transcriptional regulator VanR compare
PP_1621 +0.6 1.7 Protein-L-isoaspartate O-methyltransferase compare


Specific Phenotypes

For 2 genes in this experiment