Experiment set36IT094 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PP_3105 -4.5 -3.1 conserved membrane protein of unknown function compare
PP_1468 -3.6 -4.2 Tyrosine recombinase XerD compare
PP_2510 -3.5 -2.0 conserved protein of unknown function compare
PP_0856 -3.1 -2.2 conserved lipoprotein of unknown function compare
PP_4004 -3.0 -6.5 DNA translocase FtsK compare
PP_0691 -2.8 -1.9 Glutamate 5-kinase compare
PP_5310 -2.8 -7.4 junction-specific ATP-dependent DNA helicase compare
PP_4482 -2.6 -3.1 Transcriptional regulator, AraC family compare
PP_0999 -2.6 -4.7 carbamate kinase compare
PP_2370 -2.6 -2.5 conserved protein of unknown function compare
PP_1733 -2.6 -4.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4828 -2.3 -1.3 Precorrin-8X methylmutase compare
PP_2306 -2.3 -2.2 conserved exported protein of unknown function compare
PP_4792 -2.3 -3.2 conserved exported protein of unknown function compare
PP_1216 -2.3 -4.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2379 -2.3 -3.2 putative cytochrome oxidase biogenesis protein compare
PP_5486 -2.3 -2.5 conserved protein of unknown function compare
PP_5546 -2.3 -2.6 conserved protein of unknown function compare
PP_2402 -2.2 -2.1 putative Sensor histidine kinase compare
PP_1217 -2.2 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1001 -2.2 -3.4 arginine deiminase compare
PP_4273 -2.2 -1.1 Transcriptional regulator, MerR family compare
PP_4214 -2.2 -3.3 pyoverdine biosynthesis related protein compare
PP_0022 -2.2 -1.3 hypothetical protein compare
PP_4254 -2.2 -2.2 conserved protein of unknown function compare
PP_4902 -2.1 -2.9 Oligoribonuclease compare
PP_1215 -2.1 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4804 -2.1 -2.5 RlpA-like lipoprotein compare
PP_0888 -2.1 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_5014 -2.1 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4213 -2.1 -2.8 putative dipeptidase compare
PP_2378 -2.1 -1.4 Fe/S biogenesis protein NfuA compare
PP_4265 -2.0 -1.4 DNA-binding transcriptional dual regulator compare
PP_3365 -1.9 -1.1 Acetolactate synthase compare
PP_0630 -1.9 -1.4 DNA gyrase inhibitor YacG compare
PP_5508 -1.9 -1.3 conserved protein of unknown function compare
PP_1994 -1.9 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_4058 -1.9 -8.5 1,4-alpha-glucan branching enzyme compare
PP_t12 -1.8 -1.3 tRNA-Thr compare
PP_3930 -1.8 -2.7 conserved exported protein of unknown function compare
PP_2253 -1.8 -2.1 Transcriptional regulator, GntR family compare
PP_5628 -1.8 -2.4 conserved protein of unknown function compare
PP_1002 -1.8 -4.9 arginine/ornithine antiporter compare
PP_4693 -1.8 -4.9 RNA polymerase-binding transcription factor DksA compare
PP_5017 -1.8 -1.3 Sec-independent protein translocase protein TatB compare
PP_0003 -1.8 -3.4 16S RNA methyltransferase compare
PP_3241 -1.8 -1.2 conserved exported protein of unknown function compare
PP_1609 -1.7 -2.3 conserved protein of unknown function compare
PP_1208 -1.7 -2.6 conserved protein of unknown function, SlyX family compare
PP_5095 -1.7 -1.2 pyrroline-5-carboxylate reductase compare
PP_4880 -1.7 -7.6 exoribonuclease R compare
PP_4098 -1.7 -1.7 UvrABC system protein C compare
PP_0872 -1.6 -4.5 Peptide chain release factor 3 compare
PP_5267 -1.6 -1.9 putative cytochrome c5 compare
PP_5230 -1.6 -2.6 Tyrosine recombinase XerC compare
PP_4943 -1.6 -2.0 putative Glycosyl transferase compare
PP_2348 -1.6 -3.2 Sensor histidine kinase compare
PP_0401 -1.6 -2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_4620 -1.6 -5.8 Fumarylacetoacetase compare
PP_1783 -1.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_3411 -1.6 -1.1 conserved protein of unknown function compare
PP_4696 -1.5 -3.4 Nitrogen regulation protein NR(I) compare
PP_1353 -1.5 -2.6 conserved membrane protein of unknown function compare
PP_4504 -1.5 -1.5 conserved exported protein of unknown function compare
PP_0852 -1.5 -2.6 Transcriptional regulator, Cro/CI family compare
PP_3770 -1.5 -3.1 conserved protein of unknown function compare
PP_5445 -1.4 -1.9 conserved protein of unknown function compare
PP_4379 -1.4 -2.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4199 -1.4 -1.0 putative Lipoprotein compare
PP_1079 -1.4 -3.4 Ornithine carbamoyltransferase compare
PP_3034 -1.4 -2.5 putative Regulator protein compare
PP_5201 -1.4 -2.4 conserved protein of unknown function, UPF0149 family compare
PP_5430 -1.4 -3.0 protein of unknown function compare
PP_4271 -1.4 -1.0 conserved protein of unknown function compare
PP_1415 -1.4 -3.0 putative membrane associated enzyme subunit compare
PP_0855 -1.4 -2.1 conserved protein of unknown function compare
PP_1004 -1.4 -2.5 conserved protein of unknown function compare
PP_1664 -1.4 -1.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1826 -1.4 -2.3 Hydrolase, isochorismatase family compare
PP_0293 -1.4 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3806 -1.4 -1.9 Hydrolase, isochorismatase family compare
PP_0484 -1.4 -3.6 transporter of an unknown substrate compare
PP_4471 -1.4 -3.2 Magnesium transporter compare
PP_4342 -1.4 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_0735 -1.3 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_1000 -1.3 -2.8 ornithine carbamoyltransferase, catabolic compare
PP_2337 -1.3 -2.0 aconitate isomerase compare
PP_0393 -1.3 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5706 -1.3 -1.7 Sec translocation complex - SecG subunit compare
PP_4362 -1.3 -2.6 conserved protein of unknown function compare
PP_5507 -1.3 -3.2 protein of unknown function compare
PP_0087 -1.3 -1.7 conserved exported protein of unknown function compare
PP_4642 -1.3 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_0307 -1.3 -1.6 conserved exported protein of unknown function compare
PP_4215 -1.3 -3.8 pyoverdine biosynthesis related protein compare
PP_0846 -1.3 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_1187 -1.3 -4.1 sensor protein compare
PP_4997 -1.3 -1.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2581 -1.3 -1.2 conserved protein of unknown function compare
PP_4895 -1.3 -1.5 tRNA dimethylallyltransferase compare
PP_2073 -1.3 -2.2 Acetyltransferase, GNAT family compare
PP_4917 -1.3 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0184 -1.3 -4.8 Argininosuccinate lyase compare
PP_4477 -1.2 -4.1 N-succinylarginine dihydrolase compare
PP_5717 -1.2 -2.0 conserved protein of unknown function compare
PP_0998 -1.2 -4.2 conserved protein of unknown function compare
PP_2336 -1.2 -1.6 aconitate hydratase 1 compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0801 -1.2 -1.1 conserved exported protein of unknown function compare
PP_4207 -1.2 -2.6 conserved protein of unknown function compare
PP_5675 -1.2 -3.0 conserved protein of unknown function compare
PP_4707 -1.2 -1.6 OsmY-related protein compare
PP_4065 -1.2 -4.5 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_1237 -1.2 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1041 -1.2 -1.2 twin arginine protein export complex subunit compare
PP_2147 -1.2 -2.5 conserved exported protein of unknown function compare
PP_2568 -1.2 -0.9 Ring-cleaving dioxygenase compare
PP_4008 -1.2 -4.0 ATP-dependent serine protease compare
PP_3312 -1.1 -1.3 putative Heat shock protein compare
PP_0550 -1.1 -2.0 conserved protein of unknown function compare
PP_3999 -1.1 -3.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4067 -1.1 -3.3 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_t29 -1.1 -1.4 tRNA-Ala compare
PP_0627 -1.1 -1.4 conserved protein of unknown function compare
PP_4560 -1.1 -1.5 putative Ribonuclease BN compare
PP_3532 -1.1 -1.3 Transcriptional regulator, AsnC family compare
PP_5052 -1.1 -1.7 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_3580 -1.1 -1.2 conserved protein of unknown function compare
PP_3481 -1.1 -1.5 conserved exported protein of unknown function compare
PP_3276 -1.1 -3.3 ring 1,2-phenylacetyl-CoA epoxidase beta subunit compare
PP_1690 -1.1 -1.8 conserved protein of unknown function compare
PP_2299 -1.1 -2.3 Trigger factor compare
PP_2520 -1.1 -2.4 conserved protein of unknown function compare
PP_5352 -1.1 -6.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4210 -1.1 -5.6 pyoverdine efflux carrier and ATP binding protein compare
PP_3519 -1.1 -0.9 putative Lipoprotein compare
PP_2929 -1.1 -4.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3904 -1.1 -2.5 conserved protein of unknown function compare
PP_1568 -1.1 -1.1 conserved protein of unknown function compare
PP_3825 -1.0 -2.1 conserved protein of unknown function compare
PP_1186 -1.0 -1.3 two component system DNA-binding transcriptional dual regulator compare
PP_1556 -1.0 -1.8 conserved protein of unknown function compare
PP_2159 -1.0 -2.5 Copper-binding protein, plastocyanin/azurin family compare
PP_4122 -1.0 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2631 -1.0 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5309 -1.0 -2.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4546 -1.0 -2.1 ATP-dependent helicase HrpA compare
PP_2217 -1.0 -1.5 enoyl-CoA hydratase compare
PP_1088 -1.0 -5.5 Argininosuccinate synthase compare
PP_4870 -1.0 -2.0 Azurin compare
PP_4700 -1.0 -1.6 pantothenate synthetase compare
PP_2898 -1.0 -1.5 conserved exported protein of unknown function compare
PP_0126 -1.0 -2.0 Cytochrome c4 compare
PP_0683 -1.0 -1.8 conserved protein of unknown function compare
PP_5202 -1.0 -1.5 putative cell division protein compare
PP_4196 -1.0 -1.1 conserved exported protein of unknown function compare
PP_0278 -1.0 -3.1 conserved protein of unknown function compare
PP_2947 -1.0 -2.2 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3333 -1.0 -2.1 conserved protein of unknown function compare
PP_2416 -1.0 -1.1 putative Iron ABC transporter, ATP-binding protein compare
PP_1008 -1.0 -1.6 RNA polymerase subunit sigma-24 compare
PP_4811 -1.0 -1.5 Gamma-glutamyl phosphate reductase compare
PP_3407 -1.0 -1.7 conserved protein of unknown function compare
PP_1654 -1.0 -1.1 cysteine synthase B compare
PP_0254 -0.9 -2.1 conserved protein of unknown function compare
PP_1366 -0.9 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_2371 -0.9 -2.5 Sulphite reductase hemoprotein, beta subunit compare
PP_3924 -0.9 -1.5 conserved protein of unknown function compare
PP_0711 -0.9 -2.0 putative hydrolase compare
PP_3427 -0.9 -2.6 Multidrug efflux RND outer membrane protein OprN compare
PP_1778 -0.9 -3.4 Lipopolysaccharide ABC export system, permease protein compare
PP_2215 -0.9 -2.2 acetyl-CoA acetyltransferase compare
PP_5388 -0.9 -2.9 probable exported copper efflux protein compare
PP_3771 -0.9 -3.0 conserved protein of unknown function compare
PP_4875 -0.9 -2.7 conserved membrane protein of unknown function compare
PP_2931 -0.9 -2.5 conserved protein of unknown function compare
PP_1317 -0.9 -2.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5558 -0.9 -2.5 putative transcriptional xre family of phage origin compare
PP_4131 -0.9 -2.1 NADH-quinone oxidoreductase subunit N compare
PP_1189 -0.9 -2.8 conserved hypothetical protein compare
PP_2433 -0.9 -1.8 conserved protein of unknown function compare
PP_0949 -0.9 -2.8 putative ATP-binding protein UPF0042 compare
PP_0565 -0.9 -1.9 putative enzyme compare
PP_2107 -0.9 -0.9 conserved protein of unknown function compare
PP_4211 -0.9 -2.3 outer membrane pyoverdine efflux protein compare
PP_4766 -0.9 -3.5 ATP-dependent RNA helicase compare
PP_3307 -0.9 -0.9 conserved protein of unknown function compare
PP_3684 -0.9 -2.6 conserved protein of unknown function compare
PP_4913 -0.9 -2.2 conserved protein of unknown function compare
PP_1344 -0.9 -0.7 conserved protein of unknown function compare
PP_1836 -0.9 -2.2 putative metal transporter, ZIP family compare
PP_3190 -0.9 -1.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5327 -0.9 -2.0 putative phosphate ABC transporter, permease subunit compare
PP_4130 -0.9 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2684 -0.9 -1.9 conserved membrane protein of unknown function compare
PP_4964 -0.9 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_2722 -0.9 -1.6 conserved protein of unknown function compare
PP_4054 -0.9 -1.3 conserved protein of unknown function compare
PP_2740 -0.8 -1.0 Transcriptional regulator, MerR family compare
PP_4993 -0.8 -2.6 Glutathione synthetase compare


Specific Phenotypes

For 3 genes in this experiment