Experiment set36IT094 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with no fungus

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +8.1 29.6 Sensor protein GacS compare
PP_4099 +7.7 35.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2889 +2.8 6.7 putative Transmembrane regulator PrtR compare
PP_4356 +2.3 8.0 Flagellar protein FliO compare
PP_4354 +2.3 8.9 flagellar export apparatus subunit compare
PP_2000 +2.2 1.5 amidophosphoribosyl transferase compare
PP_4353 +2.2 7.1 Flagellar biosynthetic protein fliR compare
PP_4355 +2.1 2.8 flagellar export apparatus subunit compare
PP_0593 +2.1 2.6 putative ribosome-binding factor compare
PP_4394 +2.0 11.5 flagella basal body P-ring formation protein compare
PP_0425 +2.0 1.7 conserved protein of unknown function compare
PP_4370 +2.0 9.3 Flagellar hook-basal body complex protein FliE compare
PP_4352 +1.9 13.0 flagellin export apparatus, substrate specificity protein compare
PP_4385 +1.9 8.8 flagellar basal-body rod protein FlgG compare
PP_1456 +1.8 1.7 conserved membrane protein of unknown function compare
PP_4561 +1.8 2.4 stress response protein compare
PP_4384 +1.8 11.7 Flagellar L-ring protein compare
PP_4344 +1.8 12.4 flagellar export pore protein compare
PP_4373 +1.8 9.0 Transcriptional regulator FleQ compare
PP_4391 +1.8 6.9 flagellar basal-body rod protein FlgB compare
PP_4358 +1.8 8.8 flagellar synthesis, switching and energizing component compare
PP_4365 +1.8 7.8 Flagellar protein FliJ compare
PP_0948 +1.8 3.6 Phosphocarrier protein HPr compare
PP_4368 +1.7 8.9 flagellar motor switch protein compare
PP_1655 +1.7 4.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4366 +1.7 11.9 flagellum-specific ATP synthase compare
PP_4383 +1.7 8.9 Flagellar P-ring protein compare
PP_4389 +1.7 9.5 Flagellar basal-body rod modification protein FlgD compare
PP_4396 +1.7 4.9 conserved protein of unknown function compare
PP_4388 +1.7 11.9 Flagellar hook protein FlgE compare
PP_4341 +1.6 8.1 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0574 +1.6 7.7 DNA-binding response regulator, LuxR family compare
PP_4382 +1.6 10.0 Peptidoglycan hydrolase FlgJ compare
PP_4369 +1.6 11.4 Flagellar M-ring protein compare
PP_0960 +1.6 1.4 phospholipid ABC transporter binding protein compare
PP_1656 +1.6 6.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_3926 +1.6 2.0 short-chain dehydrogenase compare
PP_4361 +1.6 7.3 Flagellar hook-length control protein FliK compare
PP_4381 +1.6 11.0 Flagellar hook-associated protein FlgK compare
PP_4380 +1.6 12.0 Flagellar hook-associated protein FlgL compare
PP_4337 +1.6 8.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4386 +1.5 7.8 flagellar basal-body rod protein FlgF compare
PP_5274 +1.5 1.9 conserved protein of unknown function compare
PP_3052 +1.5 2.5 conserved protein of unknown function compare
PP_5054 +1.5 2.0 glutaredoxin 3 compare
PP_4171 +1.5 7.1 conserved exported protein of unknown function compare
PP_4378 +1.5 11.3 flagellin, filament structural protein compare
PP_4847 +1.4 5.1 chaperone modulatory of CbpA co-chaperone protein compare
PP_1493 +1.4 3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4376 +1.4 10.6 flagellar filament capping protein compare
PP_4910 +1.4 3.0 conserved protein of unknown function compare
PP_3883 +1.4 3.9 putative Phage holin compare
PP_1055 +1.3 1.0 Type II secretion pathway protein GspN compare
PP_0424 +1.3 4.2 DNA-binding transcriptional dual regulator compare
PP_4367 +1.3 5.5 Flagellar assembly protein FliH compare
PP_4390 +1.3 6.3 flagellar basal-body rod protein FlgC compare
PP_3120 +1.3 1.7 methylglyoxal reductase compare
PP_4336 +1.2 6.3 flagellar motor rotation protein compare
PP_4897 +1.2 2.1 N-acetylmuramoyl-L-alanine amidase compare
PP_5331 +1.2 3.3 Long-chain acyl-CoA thioester hydrolase compare
PP_1623 +1.2 6.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_4359 +1.2 4.7 Flagellar protein FliL compare
PP_4593 +1.2 2.7 conserved protein of unknown function compare
PP_4223 +1.1 1.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4904 +1.1 5.3 Flagellar motor rotation protein compare
PP_4364 +1.1 3.8 putative Anti-sigma F factor antagonist compare
PP_2459 +1.1 3.4 ribose pyranase compare
PP_0412 +1.1 2.7 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0607 +1.1 1.1 putative Type IV pili biogenesis protein FimT compare
PP_1825 +1.1 1.0 conserved exported protein of unknown function compare
PP_4375 +1.1 4.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_1628 +1.0 3.3 NMN amidohydrolase compare
PP_3098 +1.0 1.5 conserved protein of unknown function compare
PP_1074 +1.0 1.6 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0989 +1.0 1.4 glycine cleavage system H protein 1 compare
PP_5548 +1.0 2.6 protein of unknown function compare
PP_4531 +1.0 1.7 conserved exported protein of unknown function compare
PP_5705 +1.0 1.3 protein of unknown function compare
PP_5058 +0.9 3.3 Carboxy-terminal-processing protease compare
PP_5114 +0.9 1.0 putative adenine methyltransferase compare
PP_5698 +0.9 2.0 conserved exported protein of unknown function compare
PP_5505 +0.9 2.0 conserved transmembrane protein of unknown function compare
PP_5497 +0.9 1.9 conserved protein of unknown function with rhs repeat-associated core domain compare
PP_2249 +0.9 2.1 Methyl-accepting chemotaxis protein PctB compare
PP_2231 +0.9 1.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5324 +0.9 1.1 Response regulator compare
PP_1522 +0.9 3.0 major cold shock protein compare
PP_0164 +0.9 3.1 conserved protein of unknown function compare
PP_2978 +0.9 2.8 conserved protein of unknown function compare
PP_1087 +0.9 5.2 Outer membrane protein, OmpA family compare
PP_2387 +0.9 1.4 conserved protein of unknown function compare
PP_2341 +0.9 1.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3043 +0.9 2.5 conserved protein of unknown function compare
PP_1412 +0.9 1.4 3-hydroxyisobutyryl-CoA hydrolase compare
PP_1310 +0.9 1.2 conserved hypothetical protein compare
PP_1271 +0.9 2.6 putative Multidrug efflux MFS transporter compare
PP_3903 +0.8 1.0 conserved protein of unknown function compare
PP_4905 +0.8 3.2 Flagellar motor rotation protein compare
PP_1113 +0.8 4.1 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0914 +0.8 4.4 GGDEF domain protein compare
PP_3110 +0.8 2.0 protein of unknown function compare
PP_1322 +0.8 1.3 putative Lipoprotein compare
PP_0063 +0.8 2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3232 +0.8 1.3 Acetyltransferase, GNAT family compare
PP_4335 +0.8 4.4 flagellar motor protein compare
PP_4957 +0.8 2.0 conserved protein of unknown function compare
PP_0640 +0.8 2.8 conserved protein of unknown function compare
PP_3833 +0.8 2.1 Response regulator compare
PP_4348 +0.8 2.3 putative Cystathionine beta-lyase compare
PP_4372 +0.8 2.8 Sensory box histidine kinase FleS compare
PP_5721 +0.8 3.4 conserved protein of unknown function compare
PP_4701 +0.8 0.9 glucose-6-phosphate isomerase compare
PP_1453 +0.8 2.4 putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity compare
PP_1225 +0.8 2.4 7-carboxy-7-deazaguanine synthase compare
PP_0725 +0.8 1.9 conserved hypothetical TPR repeat protein compare
PP_1808 +0.8 1.2 glucose-6-phosphate isomerase compare
PP_3816 +0.8 1.1 Polyamine ABC transporter, permease protein compare
PP_2105 +0.8 3.0 conserved protein of unknown function compare
PP_0122 +0.8 1.9 conserved exported protein of unknown function compare
PP_1739 +0.7 1.0 conserved membrane protein of unknown function compare
PP_5241 +0.7 1.4 DNA-binding response regulator, LuxR family compare
PP_0905 +0.7 1.2 conserved exported protein of unknown function compare
PP_5051 +0.7 1.3 conserved protein of unknown function compare
PP_0643 +0.7 1.5 protein of unknown function compare
PP_2899 +0.7 1.3 conserved exported protein of unknown function compare
PP_3876 +0.7 1.1 conserved protein of unknown function compare
PP_5471 +0.7 1.1 putative response regulator receiver protein compare
PP_4371 +0.7 4.4 two component system AtoC DNA-binding transcriptional activator compare
PP_5145 +0.7 5.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0807 +0.7 1.7 DNA-binding transcriptional dual regulator (NO) compare
PP_3592 +0.7 1.3 Transcriptional regulator, RpiR family compare
PP_0339 +0.7 1.0 Pyruvate dehydrogenase E1 component compare
PP_0839 +0.7 1.3 tRNA Cm32/Um32 methyltransferase compare
PP_1571 +0.7 2.2 conserved protein of unknown function compare
PP_5109 +0.7 3.2 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_1804 +0.7 1.2 Glycosyl transferase WbpL compare
PP_0770 +0.7 1.2 PemI-like protein compare
PP_0355 +0.7 1.8 Response regulator compare
PP_0971 +0.7 1.4 conserved protein of unknown function compare
PP_2032 +0.7 2.6 putative ATPase compare
PP_3225 +0.7 1.9 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_0553 +0.7 1.0 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_1790 +0.7 1.0 putative Acylneuraminate cytidylyltransferase compare
PP_5619 +0.7 1.5 protein of unknown function compare
PP_0086 +0.7 1.0 conserved protein of unknown function compare
PP_3831 +0.7 3.1 conserved protein of unknown function compare
PP_0152 +0.7 1.9 conserved exported protein of unknown function compare
PP_3392 +0.7 1.1 conserved protein of unknown function compare
PP_2075 +0.7 3.2 conserved membrane protein of unknown function compare
PP_5640 +0.7 1.3 conserved protein of unknown function compare
PP_2914 +0.7 1.7 osmosensory proline/betaine/H+ permease compare
PP_0240 +0.7 1.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2648 +0.7 1.8 Universal stress protein family compare
PP_2649 +0.7 2.1 Transcriptional regulator, LysR family compare
PP_3256 +0.7 2.0 Glycosyl transferase, group 2 family protein compare
PP_0516 +0.7 1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_0862 +0.7 2.6 PKHD-type hydroxylase PP_0862 compare
PP_3880 +0.7 0.9 conserved exported protein of unknown function compare
PP_2055 +0.7 1.6 putative isomerase compare
PP_1697 +0.7 1.3 transcriptional regulator, GntR family compare
PP_0025 +0.6 0.8 hypothetical protein compare
PP_1276 +0.6 2.1 conserved protein of unknown function compare
PP_5057 +0.6 2.9 Peptidase, M23/M37 family compare
PP_4995 +0.6 3.1 putative protein possibly involved in the control of exopolysaccharide production compare
PP_3956 +0.6 1.7 conserved protein of unknown function compare
PP_2290 +0.6 1.5 conserved protein of unknown function compare
PP_4233 +0.6 2.0 putative Oxidoreductase, small subunit compare
PP_5552 +0.6 0.8 conserved protein of unknown function compare
PP_1097 +0.6 0.6 Methionine--tRNA ligase compare
PP_3597 +0.6 2.8 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_4070 +0.6 3.0 conserved protein of unknown function compare
PP_3710 +0.6 2.1 conserved protein of unknown function compare
PP_5617 +0.6 1.8 conserved protein of unknown function compare
PP_1261 +0.6 1.2 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_2813 +0.6 2.0 BNR domain protein compare
PP_2430 +0.6 1.6 Transcriptional regulator, AraC family compare
PP_0089 +0.6 2.1 stress-induced peroxiredoxin, lipoyl-dependent peroxidase compare
PP_3081 +0.6 1.4 conserved protein of unknown function compare
PP_5671 +0.6 1.9 conserved protein of unknown function compare
PP_4817 +0.6 1.9 MaoC domain protein compare
PP_2734 +0.6 2.0 Cyclopropane-fatty-acyl-phospholipid synthase compare
PP_2511 +0.6 1.5 conserved protein of unknown function compare
PP_3460 +0.6 1.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3558 +0.6 1.8 putative Amino acid transporter, periplasmic amino acid-binding protein compare
PP_0161 +0.6 2.1 putative transmembrane sensor compare
PP_3941 +0.6 2.8 maleamate amidohydrolase compare
PP_2533 +0.6 1.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1583 +0.6 1.7 putative Structural protein P5 compare
PP_4999 +0.6 0.4 dihydroorotase-like protein compare
PP_1442 +0.6 1.6 conserved protein of unknown function compare
PP_4710 +0.6 3.1 tRNA pseudouridine 55 synthase compare
PP_4981 +0.6 1.7 polyisoprene-binding protein, acidic stress response factor compare
PP_0874 +0.6 0.8 conserved protein of unknown function compare
PP_3164 +0.6 1.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1236 +0.6 1.6 putative Glycine cleavage system transcriptional repressor compare
PP_3551 +0.6 1.3 DNA-binding response regulator, LuxR family compare
PP_3309 +0.6 2.5 promiscuous aromatic aldehyde dehydrogenase, FAD-binding subunit compare
PP_3222 +0.6 2.0 ABC transporter, permease protein compare
PP_2551 +0.6 1.9 Transcriptional regulator, LysR family compare
PP_4689 +0.6 2.4 Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein compare


Specific Phenotypes

For 3 genes in this experiment