Experiment set36IT092 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PP_3105 -4.7 -3.2 conserved membrane protein of unknown function compare
PP_4004 -3.8 -7.1 DNA translocase FtsK compare
PP_1468 -3.7 -4.4 Tyrosine recombinase XerD compare
PP_1217 -3.1 -6.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2217 -2.9 -3.4 enoyl-CoA hydratase compare
PP_1733 -2.9 -4.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1001 -2.7 -3.3 arginine deiminase compare
PP_0999 -2.7 -4.9 carbamate kinase compare
PP_0856 -2.7 -3.7 conserved lipoprotein of unknown function compare
PP_1999 -2.6 -2.2 membrane protein required for colicin V production compare
PP_5253 -2.6 -2.4 Arylesterase compare
PP_5248 -2.5 -1.3 putative hydrolase compare
PP_1215 -2.5 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4213 -2.5 -2.9 putative dipeptidase compare
PP_0566 -2.5 -1.4 translation-related factor compare
PP_0691 -2.4 -2.3 Glutamate 5-kinase compare
PP_4693 -2.4 -4.8 RNA polymerase-binding transcription factor DksA compare
PP_0959 -2.4 -2.8 phospholipid ABC transporter compare
PP_2972 -2.3 -2.2 conserved protein of unknown function compare
PP_5230 -2.3 -3.8 Tyrosine recombinase XerC compare
PP_2337 -2.3 -2.2 aconitate isomerase compare
PP_2429 -2.3 -1.5 putative Membrane protein compare
PP_1344 -2.2 -1.7 conserved protein of unknown function compare
PP_4811 -2.2 -4.2 Gamma-glutamyl phosphate reductase compare
PP_4700 -2.1 -2.1 pantothenate synthetase compare
PP_0855 -2.1 -2.4 conserved protein of unknown function compare
PP_0065 -2.0 -3.6 NAD-binding component of TrK potassium transporter compare
PP_4943 -2.0 -2.4 putative Glycosyl transferase compare
PP_5486 -2.0 -1.6 conserved protein of unknown function compare
PP_2597 -2.0 -3.7 conserved protein of unknown function compare
PP_5310 -2.0 -5.7 junction-specific ATP-dependent DNA helicase compare
PP_2633 -2.0 -1.8 conserved protein of unknown function compare
PP_4620 -2.0 -5.6 Fumarylacetoacetase compare
PP_1000 -2.0 -4.9 ornithine carbamoyltransferase, catabolic compare
PP_1826 -2.0 -2.2 Hydrolase, isochorismatase family compare
PP_1237 -1.9 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1232 -1.9 -5.9 conserved exported protein of unknown function compare
PP_4966 -1.9 -2.9 transcriptional regulator of methionine metabolism compare
PP_4804 -1.9 -2.6 RlpA-like lipoprotein compare
PP_1176 -1.9 -1.5 conserved protein of unknown function compare
PP_1824 -1.9 -1.8 Smr domain protein compare
PP_1353 -1.9 -2.9 conserved membrane protein of unknown function compare
PP_3840 -1.8 -1.7 conserved protein of unknown function compare
PP_5552 -1.8 -1.7 conserved protein of unknown function compare
PP_0292 -1.8 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2214 -1.8 -3.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4880 -1.8 -8.1 exoribonuclease R compare
PP_2378 -1.8 -1.7 Fe/S biogenesis protein NfuA compare
PP_4215 -1.8 -4.4 pyoverdine biosynthesis related protein compare
PP_4262 -1.8 -2.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5548 -1.8 -2.9 protein of unknown function compare
PP_0326 -1.8 -3.2 sarcosine oxidase subunit gamma compare
PP_3098 -1.7 -1.2 conserved protein of unknown function compare
PP_4008 -1.7 -4.9 ATP-dependent serine protease compare
PP_5007 -1.7 -2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4129 -1.7 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4265 -1.7 -2.0 DNA-binding transcriptional dual regulator compare
PP_2718 -1.7 -2.1 arsenic resistance transcriptional regulator compare
PP_3924 -1.7 -2.2 conserved protein of unknown function compare
PP_5359 -1.6 -2.1 CobW/P47K family protein compare
PP_1366 -1.6 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_4122 -1.6 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3603 -1.6 -4.2 Transcriptional regulator, GntR family compare
PP_5327 -1.6 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_4942 -1.6 -2.4 conserved protein of unknown function compare
PP_2765 -1.6 -1.5 putative Sulfonate monooxygenase MsuD compare
PP_0962 -1.6 -2.0 toluene-tolerance protein compare
PP_1829 -1.6 -1.6 Hydrolase, alpha/beta fold family compare
PP_0872 -1.6 -4.7 Peptide chain release factor 3 compare
PP_0630 -1.6 -1.3 DNA gyrase inhibitor YacG compare
PP_5589 -1.6 -2.9 protein of unknown function containing Rhs repeat-associated core domain compare
PP_4848 -1.6 -2.5 Curved DNA-binding protein compare
PP_2336 -1.6 -1.5 aconitate hydratase 1 compare
PP_2147 -1.5 -2.0 conserved exported protein of unknown function compare
PP_4696 -1.5 -3.5 Nitrogen regulation protein NR(I) compare
PP_1690 -1.5 -3.4 conserved protein of unknown function compare
PP_3035 -1.5 -2.0 conserved protein of unknown function compare
PP_5508 -1.5 -1.2 conserved protein of unknown function compare
PP_2307 -1.5 -1.9 conserved protein of unknown function compare
PP_2520 -1.5 -3.0 conserved protein of unknown function compare
PP_3999 -1.5 -3.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1855 -1.5 -2.9 conserved exported protein of unknown function compare
PP_1654 -1.5 -1.0 cysteine synthase B compare
PP_4994 -1.5 -2.8 conserved protein of unknown function compare
PP_3315 -1.5 -3.0 conserved membrane protein of unknown function compare
PP_0393 -1.5 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5093 -1.5 -1.1 twitching motility protein compare
PP_5267 -1.4 -1.6 putative cytochrome c5 compare
PP_5279 -1.4 -2.6 conserved protein of unknown function compare
PP_4058 -1.4 -6.3 1,4-alpha-glucan branching enzyme compare
PP_1994 -1.4 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1002 -1.4 -3.7 arginine/ornithine antiporter compare
PP_4379 -1.4 -2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4247 -1.4 -1.3 Exonuclease compare
PP_4098 -1.4 -1.7 UvrABC system protein C compare
PP_2684 -1.4 -2.5 conserved membrane protein of unknown function compare
PP_2243 -1.4 -3.2 conserved protein of unknown function compare
PP_3312 -1.4 -1.5 putative Heat shock protein compare
PP_5317 -1.4 -2.3 Probable chorismate pyruvate-lyase compare
PP_3798 -1.3 -2.7 conserved protein of unknown function compare
PP_4342 -1.3 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_5309 -1.3 -4.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2334 -1.3 -3.6 2-methylisocitrate lyase compare
PP_4766 -1.3 -3.8 ATP-dependent RNA helicase compare
PP_3938 -1.3 -1.3 conserved protein of unknown function compare
PP_4941 -1.3 -3.6 conserved exported protein of unknown function compare
PP_0002 -1.3 -5.3 probable chromosome partition protein compare
PP_2568 -1.3 -1.0 Ring-cleaving dioxygenase compare
PP_1763 -1.3 -2.3 putative oxidoreductase compare
PP_2026 -1.3 -3.2 conserved protein of unknown function compare
PP_4799 -1.3 -0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1571 -1.3 -2.1 conserved protein of unknown function compare
PP_4273 -1.3 -1.2 Transcriptional regulator, MerR family compare
PP_4471 -1.3 -3.1 Magnesium transporter compare
PP_3971 -1.3 -1.3 conserved protein of unknown function compare
PP_0735 -1.3 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4074 -1.3 -3.4 conserved protein of unknown function compare
PP_0833 -1.3 -1.2 queuine tRNA-ribosyltransferase compare
PP_0401 -1.3 -2.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4131 -1.3 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_4214 -1.3 -2.8 pyoverdine biosynthesis related protein compare
PP_4124 -1.3 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_0998 -1.2 -4.4 conserved protein of unknown function compare
PP_4739 -1.2 -2.5 conserved protein of unknown function compare
PP_3519 -1.2 -1.0 putative Lipoprotein compare
PP_1489 -1.2 -1.4 CheW domain protein compare
PP_4130 -1.2 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5198 -1.2 -2.5 conserved protein of unknown function compare
PP_1076 -1.2 -4.1 aquaglyceroporin compare
PP_3685 -1.2 -3.4 conserved protein of unknown function compare
PP_1895 -1.2 -3.1 putative ABC transporter - ATP binding subunit compare
PP_1439 -1.2 -1.3 conserved exported protein of unknown function compare
PP_0257 -1.2 -3.6 protein sulfur transferase compare
PP_3824 -1.2 -2.2 conserved exported protein of unknown function compare
PP_5706 -1.2 -1.4 Sec translocation complex - SecG subunit compare
PP_1142 -1.2 -1.0 conserved protein of unknown function compare
PP_3346 -1.2 -2.0 Nickel transporter ATP-binding protein compare
PP_1629 -1.2 -3.6 Protein RecA compare
PP_1536 -1.1 -2.8 conserved protein of unknown function compare
PP_1362 -1.1 -3.1 pyruvate kinase II compare
PP_1198 -1.1 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5206 -1.1 -2.8 putative translation-related protein compare
PP_5053 -1.1 -4.3 Protein-export protein SecB compare
PP_3804 -1.1 -3.7 conserved exported protein of unknown function compare
PP_0949 -1.1 -3.8 putative ATP-binding protein UPF0042 compare
PP_0643 -1.1 -1.4 protein of unknown function compare
PP_1783 -1.1 -1.3 dTDP-glucose pyrophosphorylase compare
PP_2340 -1.1 -2.5 conserved protein of unknown function compare
PP_1317 -1.1 -3.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4699 -1.1 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2932 -1.1 -2.9 Amidase family protein compare
PP_2002 -1.1 -2.6 putative enzyme compare
PP_1214 -1.1 -2.1 putative transcriptional regulatory protein compare
PP_0887 -1.1 -3.8 Sensor histidine kinase compare
PP_3241 -1.1 -1.0 conserved exported protein of unknown function compare
PP_1734 -1.1 -2.5 Probable septum site-determining protein MinC compare
PP_3829 -1.1 -3.2 Molybdenum transport system permease protein ModB compare
PP_4631 -1.1 -2.8 conserved protein of unknown function compare
PP_1216 -1.1 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4066 -1.1 -1.8 methylglutaconyl-CoA hydratase compare
PP_5045 -1.1 -2.3 tRNA sulfurtransferase compare
PP_5167 -1.1 -2.2 conserved hypothetical protein compare
PP_4726 -1.1 -2.0 Chaperone protein DnaJ compare
PP_1381 -1.1 -0.9 4-carboxymuconolactone decarboxylase compare
PP_5528 -1.1 -0.9 conserved protein of unknown function compare
PP_4695 -1.1 -5.8 Sensory box histidine kinase compare
PP_0003 -1.1 -2.3 16S RNA methyltransferase compare
PP_1447 -1.1 -1.8 conserved protein of unknown function compare
PP_3320 -1.0 -2.0 conserved protein of unknown function compare
PP_4227 -1.0 -1.3 conserved protein of unknown function compare
PP_2227 -1.0 -2.9 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_3332 -1.0 -1.3 putative cytochrome c-type protein compare
PP_4964 -1.0 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4593 -1.0 -1.1 conserved protein of unknown function compare
PP_5717 -1.0 -1.5 conserved protein of unknown function compare
PP_0809 -1.0 -3.6 disulfide bond formation protein B compare
PP_4913 -1.0 -3.2 conserved protein of unknown function compare
PP_2371 -1.0 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2132 -1.0 -2.7 Universal stress protein compare
PP_4067 -1.0 -3.2 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1088 -1.0 -5.0 Argininosuccinate synthase compare
PP_3449 -1.0 -1.9 conserved exported protein of unknown function compare
PP_0324 -1.0 -3.9 sarcosine oxidase subunit delta compare
PP_5139 -1.0 -3.0 cadmium translocating P-type ATPase compare
PP_2306 -1.0 -1.6 conserved exported protein of unknown function compare
PP_2510 -1.0 -1.4 conserved protein of unknown function compare
PP_2475 -1.0 -3.0 Transcriptional regulator, TetR family compare
PP_5640 -1.0 -1.9 conserved protein of unknown function compare
PP_2220 -1.0 -2.2 C4-type zinc finger protein, DksA/TraR family compare
PP_5221 -1.0 -1.5 conserved protein of unknown function, UPF0178 family compare
PP_1187 -1.0 -3.4 sensor protein compare
PP_3802 -1.0 -2.9 putative Cation ABC transporter, ATP-binding protein compare
PP_1774 -1.0 -0.9 conserved exported protein of unknown function compare
PP_0846 -1.0 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_1380 -1.0 -3.3 3-oxoadipate enol-lactonase 2 compare
PP_4591 -1.0 -2.6 Ribonuclease D compare
PP_2379 -1.0 -2.4 putative cytochrome oxidase biogenesis protein compare
PP_4121 -1.0 -1.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4424 -1.0 -1.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5393 -0.9 -0.9 putative metal-binding chaperone compare


Specific Phenotypes

For 1 genes in this experiment