Experiment set36IT091 for Pseudomonas putida KT2440

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PP_3105 -4.7 -2.6 conserved membrane protein of unknown function compare
PP_5508 -4.3 -1.4 conserved protein of unknown function compare
PP_3098 -4.0 -1.3 conserved protein of unknown function compare
PP_4199 -3.9 -1.3 putative Lipoprotein compare
PP_3580 -3.4 -2.7 conserved protein of unknown function compare
PP_5310 -3.4 -7.6 junction-specific ATP-dependent DNA helicase compare
PP_2433 -3.3 -2.8 conserved protein of unknown function compare
PP_0856 -3.3 -2.3 conserved lipoprotein of unknown function compare
PP_0999 -3.3 -4.8 carbamate kinase compare
PP_3946 -3.0 -1.4 HTH-type transcriptional repressor NicR compare
PP_1001 -3.0 -3.6 arginine deiminase compare
PP_4254 -3.0 -1.9 conserved protein of unknown function compare
PP_0691 -3.0 -2.0 Glutamate 5-kinase compare
PP_0630 -2.9 -1.3 DNA gyrase inhibitor YacG compare
PP_1733 -2.9 -4.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_2510 -2.9 -1.8 conserved protein of unknown function compare
PP_0888 -2.6 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_5717 -2.6 -2.4 conserved protein of unknown function compare
PP_5114 -2.6 -2.4 putative adenine methyltransferase compare
PP_4696 -2.6 -3.6 Nitrogen regulation protein NR(I) compare
PP_1366 -2.6 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_1826 -2.4 -2.6 Hydrolase, isochorismatase family compare
PP_0126 -2.4 -3.3 Cytochrome c4 compare
PP_2442 -2.3 -2.3 conserved protein of unknown function, DUF480 family compare
PP_2337 -2.3 -2.2 aconitate isomerase compare
PP_5015 -2.3 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4122 -2.2 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1217 -2.2 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2215 -2.2 -3.7 acetyl-CoA acetyltransferase compare
PP_0513 -2.2 -1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1215 -2.1 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_2403 -2.1 -1.3 Chemotaxis protein CheY compare
PP_4642 -2.1 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_4997 -2.1 -1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2379 -2.1 -3.9 putative cytochrome oxidase biogenesis protein compare
PP_3880 -2.0 -1.1 conserved exported protein of unknown function compare
PP_4787 -2.0 -2.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4471 -2.0 -4.0 Magnesium transporter compare
PP_1002 -2.0 -5.3 arginine/ornithine antiporter compare
PP_2371 -1.9 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4964 -1.9 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4848 -1.9 -1.9 Curved DNA-binding protein compare
PP_4162 -1.9 -3.9 conserved membrane protein of unknown function compare
PP_4265 -1.9 -2.3 DNA-binding transcriptional dual regulator compare
PP_4342 -1.9 -3.3 flagellar synthesis regulator, putative ATPase compare
PP_4482 -1.9 -3.2 Transcriptional regulator, AraC family compare
PP_4308 -1.9 -2.8 Transcriptional regulator, AsnC family compare
PP_5095 -1.9 -1.2 pyrroline-5-carboxylate reductase compare
PP_4943 -1.9 -2.1 putative Glycosyl transferase compare
PP_4804 -1.9 -2.8 RlpA-like lipoprotein compare
PP_4066 -1.8 -2.2 methylglutaconyl-CoA hydratase compare
PP_1004 -1.8 -2.3 conserved protein of unknown function compare
PP_4262 -1.8 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0998 -1.8 -4.9 conserved protein of unknown function compare
PP_0945 -1.8 -2.6 conserved protein of unknown function compare
PP_1038 -1.8 -1.7 conserved protein of unknown function compare
PP_1783 -1.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_4214 -1.8 -3.7 pyoverdine biosynthesis related protein compare
PP_1503 -1.8 -2.4 conserved protein of unknown function compare
PP_0125 -1.7 -2.6 putative cytochrome c-type protein compare
PP_2348 -1.7 -4.2 Sensor histidine kinase compare
PP_4875 -1.7 -3.6 conserved membrane protein of unknown function compare
PP_1000 -1.7 -4.2 ornithine carbamoyltransferase, catabolic compare
PP_4880 -1.7 -8.6 exoribonuclease R compare
PP_1268 -1.7 -2.7 putative HtrA suppressor protein sohA compare
PP_5453 -1.7 -1.7 conserved protein of unknown function compare
PP_2370 -1.7 -1.7 conserved protein of unknown function compare
PP_4213 -1.7 -2.4 putative dipeptidase compare
PP_4136 -1.7 -1.0 Transcriptional regulator, LuxR family compare
PP_3803 -1.7 -4.2 putative Cation ABC transporter, permease protein compare
PP_2336 -1.7 -1.2 aconitate hydratase 1 compare
PP_3963 -1.7 -2.5 conserved protein of unknown function compare
PP_0062 -1.7 -3.7 3-methyl-adenine DNA glycosylase I compare
PP_0236 -1.7 -2.3 NAD(P)H-dependent FMN reductase subunit compare
PP_0086 -1.6 -1.6 conserved protein of unknown function compare
PP_4004 -1.6 -3.3 DNA translocase FtsK compare
PP_4215 -1.6 -4.3 pyoverdine biosynthesis related protein compare
PP_2417 -1.6 -2.5 putative Iron ABC transporter, permease protein compare
PP_4503 -1.6 -2.3 DNA-binding response regulator compare
PP_4693 -1.6 -4.4 RNA polymerase-binding transcription factor DksA compare
PP_4555 -1.6 -1.7 conserved protein of unknown function compare
PP_1353 -1.6 -2.4 conserved membrane protein of unknown function compare
PP_5337 -1.6 -3.7 LysR family transcriptional regulator compare
PP_5230 -1.5 -3.3 Tyrosine recombinase XerC compare
PP_4828 -1.5 -0.9 Precorrin-8X methylmutase compare
PP_0326 -1.5 -3.3 sarcosine oxidase subunit gamma compare
PP_2720 -1.5 -1.1 conserved protein of unknown function compare
PP_2105 -1.5 -2.4 conserved protein of unknown function compare
PP_4952 -1.5 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4008 -1.5 -4.9 ATP-dependent serine protease compare
PP_5705 -1.5 -1.5 protein of unknown function compare
PP_4942 -1.5 -2.3 conserved protein of unknown function compare
PP_2402 -1.5 -1.8 putative Sensor histidine kinase compare
PP_3935 -1.5 -1.7 conserved protein of unknown function compare
PP_2090 -1.5 -2.8 Uroporphyrinogen-III C-methyltransferase compare
PP_1654 -1.5 -1.0 cysteine synthase B compare
PP_1489 -1.5 -1.6 CheW domain protein compare
PP_4273 -1.5 -1.1 Transcriptional regulator, MerR family compare
PP_1451 -1.5 -4.0 conserved exported protein of unknown function compare
PP_5027 -1.5 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4700 -1.5 -2.6 pantothenate synthetase compare
PP_3770 -1.5 -2.5 conserved protein of unknown function compare
PP_3999 -1.4 -3.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3715 -1.4 -2.6 Muconate cycloisomerase 1 compare
PP_3117 -1.4 -1.6 putative protein involved in error-prone processing of DNA lesions compare
PP_3043 -1.4 -1.6 conserved protein of unknown function compare
PP_5000 -1.4 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_3519 -1.4 -0.9 putative Lipoprotein compare
PP_1045 -1.4 -1.3 Type II secretion pathway protein XcpP compare
PP_4406 -1.4 -1.6 conserved protein of unknown function compare
PP_0735 -1.4 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_5706 -1.4 -1.7 Sec translocation complex - SecG subunit compare
PP_4799 -1.4 -0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4131 -1.4 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_1128 -1.4 -2.1 OmpA family protein compare
PP_2555 -1.3 -2.8 conserved protein of unknown function compare
PP_3576 -1.3 -3.3 putative Transmembrane sensor compare
PP_0401 -1.3 -2.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1938 -1.3 -1.7 conserved protein of unknown function compare
PP_5022 -1.3 -1.1 Glutamine transport ATP-binding protein GlnQ compare
PP_0643 -1.3 -1.2 protein of unknown function compare
PP_2253 -1.3 -1.3 Transcriptional regulator, GntR family compare
PP_4620 -1.3 -4.2 Fumarylacetoacetase compare
PP_4124 -1.3 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_0855 -1.3 -2.2 conserved protein of unknown function compare
PP_0206 -1.3 -2.4 Ferredoxin, 4Fe-4S compare
PP_4556 -1.3 -2.0 conserved protein of unknown function compare
PP_1676 -1.3 -3.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4058 -1.3 -5.0 1,4-alpha-glucan branching enzyme compare
PP_2932 -1.2 -3.1 Amidase family protein compare
PP_0184 -1.2 -3.3 Argininosuccinate lyase compare
PP_0841 -1.2 -1.8 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4941 -1.2 -3.8 conserved exported protein of unknown function compare
PP_5221 -1.2 -1.1 conserved protein of unknown function, UPF0178 family compare
PP_1629 -1.2 -4.0 Protein RecA compare
PP_2497 -1.2 -1.3 conserved protein of unknown function compare
PP_3074 -1.2 -2.9 D-beta-hydroxybutyrate permease compare
PP_0872 -1.2 -3.3 Peptide chain release factor 3 compare
PP_1709 -1.2 -2.0 Fumarylacetoacetate hydrolase family protein compare
PP_0831 -1.2 -3.6 hypothetical protein compare
PP_1729 -1.2 -1.0 conserved protein of unknown function compare
PP_t57 -1.2 -2.3 tRNA-Arg compare
PP_0508 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5659 -1.2 -2.1 protein of unknown function compare
PP_2898 -1.2 -1.6 conserved exported protein of unknown function compare
PP_2384 -1.2 -2.1 conserved membrane protein of unknown function compare
PP_4067 -1.2 -2.7 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_3938 -1.2 -1.2 conserved protein of unknown function compare
PP_1748 -1.2 -2.9 conserved protein of unknown function compare
PP_5483 -1.2 -0.9 conserved protein of unknown function compare
PP_4679 -1.2 -2.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4320 -1.2 -2.9 cytochrome c-type biogenesis protein compare
PP_5328 -1.2 -1.4 putative phosphate transport system permease protein compare
PP_2793 -1.2 -0.8 Acyl-CoA dehydrogenase family protein compare
PP_1208 -1.1 -0.8 conserved protein of unknown function, SlyX family compare
PP_3094 -1.1 -2.5 conserved exported protein of unknown function compare
PP_2550 -1.1 -1.6 putative transcriptional regulatory protein compare
PP_0840 -1.1 -2.2 serine acetyltransferase compare
PP_1570 -1.1 -1.9 Head-tail adaptor compare
PP_1502 -1.1 -3.5 OmpA family protein compare
PP_1216 -1.1 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0152 -1.1 -1.1 conserved exported protein of unknown function compare
PP_1598 -1.1 -2.0 regulatory intramembrane protein RIP zinc protease compare
PP_5014 -1.1 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1026 -1.1 -2.2 Peptidase, M23/M37 family compare
PP_5028 -1.1 -2.6 proline iminopeptidase compare
PP_4766 -1.1 -3.5 ATP-dependent RNA helicase compare
PP_5708 -1.1 -4.2 protein of unknown function compare
PP_4532 -1.1 -1.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2136 -1.1 -2.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0276 -1.1 -0.7 Transcriptional regulator, Cro/CI family compare
PP_4208 -1.1 -2.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1142 -1.1 -0.9 conserved protein of unknown function compare
PP_1198 -1.1 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3198 -1.1 -1.5 Ferredoxin, 2Fe-2S compare
PP_0846 -1.1 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_1410 -1.1 -0.7 conserved protein of unknown function compare
PP_1511 -1.1 -3.0 conserved protein of unknown function compare
PP_5211 -1.1 -2.7 ChaC-related protein compare
PP_2073 -1.1 -1.7 Acetyltransferase, GNAT family compare
PP_4094 -1.1 -1.6 conserved protein of unknown function compare
PP_5652 -1.1 -1.4 conserved protein of unknown function, phage origin compare
PP_2025 -1.1 -1.5 Exonuclease SbcD compare
PP_0136 -1.1 -3.1 conserved exported protein of unknown function compare
PP_1827 -1.1 -3.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_2214 -1.1 -2.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2848 -1.1 -1.9 urease accessory protein compare
PP_5572 -1.0 -2.5 protein of unknown function compare
PP_5486 -1.0 -1.6 conserved protein of unknown function compare
PP_0685 -1.0 -1.6 conserved protein of unknown function compare
PP_3798 -1.0 -2.5 conserved protein of unknown function compare
PP_0903 -1.0 -1.9 conserved protein of unknown function compare
PP_0624 -1.0 -3.3 Uncharacterized protein YfiH compare
PP_1076 -1.0 -2.8 aquaglyceroporin compare
PP_0959 -1.0 -0.9 phospholipid ABC transporter compare
PP_5198 -1.0 -1.8 conserved protein of unknown function compare
PP_1764 -1.0 -1.6 Phosphoglycolate phosphatase 2 compare
PP_4517 -1.0 -1.4 conserved protein of unknown function compare
PP_1028 -1.0 -2.9 Transcriptional regulator, LysR family compare
PP_0257 -1.0 -1.8 protein sulfur transferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in agar plate interaction control experiments