Experiment set36IT085 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0856 -4.9 -7.5 conserved lipoprotein of unknown function compare
PP_0691 -4.5 -5.3 Glutamate 5-kinase compare
PP_4265 -4.4 -4.2 DNA-binding transcriptional dual regulator compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_4799 -4.1 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4693 -3.6 -7.6 RNA polymerase-binding transcription factor DksA compare
PP_4724 -3.2 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_4723 -3.0 -2.9 Carbamoyl-phosphate synthase large chain compare
PP_4804 -3.0 -6.6 RlpA-like lipoprotein compare
PP_1215 -2.6 -6.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4994 -2.6 -5.3 conserved protein of unknown function compare
PP_3821 -2.6 -13.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1000 -2.5 -6.9 ornithine carbamoyltransferase, catabolic compare
PP_4999 -2.4 -1.6 dihydroorotase-like protein compare
PP_1202 -2.4 -16.3 putative enzyme involved in modification of phospholipids conserved
PP_1001 -2.4 -5.6 arginine deiminase compare
PP_4342 -2.4 -7.0 flagellar synthesis regulator, putative ATPase compare
PP_0846 -2.4 -2.5 DnaK-like molecular chaperone specific for IscU compare
PP_4004 -2.4 -10.8 DNA translocase FtsK compare
PP_4902 -2.4 -5.4 Oligoribonuclease compare
PP_4700 -2.4 -4.5 pantothenate synthetase compare
PP_1232 -2.3 -9.7 conserved exported protein of unknown function compare
PP_2402 -2.3 -3.5 putative Sensor histidine kinase compare
PP_1201 -2.2 -7.8 conserved exported protein of unknown function compare
PP_0999 -2.2 -7.9 carbamate kinase compare
PP_4058 -2.2 -12.6 1,4-alpha-glucan branching enzyme compare
PP_1217 -2.0 -7.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3999 -2.0 -7.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1216 -2.0 -6.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0833 -1.9 -3.2 queuine tRNA-ribosyltransferase compare
PP_2145 -1.9 -4.2 beta-N-acetylglucosaminidase compare
PP_1002 -1.9 -8.7 arginine/ornithine antiporter compare
PP_4560 -1.8 -6.6 putative Ribonuclease BN compare
PP_5706 -1.8 -2.0 Sec translocation complex - SecG subunit compare
PP_4895 -1.8 -5.3 tRNA dimethylallyltransferase compare
PP_1734 -1.7 -6.6 Probable septum site-determining protein MinC compare
PP_1237 -1.7 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1664 -1.7 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1468 -1.7 -5.1 Tyrosine recombinase XerD compare
PP_4874 -1.7 -2.2 50S ribosomal protein L9 compare
PP_1898 -1.7 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4880 -1.7 -10.1 exoribonuclease R compare
PP_2371 -1.6 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4008 -1.6 -7.5 ATP-dependent serine protease compare
PP_0998 -1.6 -7.8 conserved protein of unknown function compare
PP_0393 -1.5 -3.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4755 -1.5 -12.7 Outer membrane ferrichrome-iron receptor compare
PP_0127 -1.5 -4.1 Thiol:disulfide interchange protein compare
PP_1733 -1.5 -6.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0406 -1.5 -3.2 Nucleotidyltransferase family protein compare
PP_1598 -1.5 -4.9 regulatory intramembrane protein RIP zinc protease compare
PP_2087 -1.5 -2.7 CmpX protein compare
PP_4482 -1.4 -5.1 Transcriptional regulator, AraC family compare
PP_1764 -1.4 -4.2 Phosphoglycolate phosphatase 2 compare
PP_0704 -1.4 -6.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0719 -1.4 -2.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5329 -1.3 -4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_t29 -1.3 -2.8 tRNA-Ala compare
PP_3098 -1.3 -1.7 conserved protein of unknown function compare
PP_2370 -1.3 -2.0 conserved protein of unknown function compare
PP_1198 -1.3 -3.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5328 -1.3 -2.2 putative phosphate transport system permease protein compare
PP_1186 -1.3 -2.8 two component system DNA-binding transcriptional dual regulator compare
PP_4785 -1.3 -4.6 conserved exported protein of unknown function compare
PP_5652 -1.2 -3.4 conserved protein of unknown function, phage origin compare
PP_0063 -1.2 -5.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1208 -1.2 -2.8 conserved protein of unknown function, SlyX family compare
PP_4937 -1.2 -4.7 toluene tolerance protein compare
PP_1353 -1.2 -3.5 conserved membrane protein of unknown function compare
PP_4824 -1.2 -5.9 Sensor histidine kinase/response regulator compare
PP_1224 -1.2 -5.5 periplasmic subunit of the TolQRA transport system compare
PP_1008 -1.2 -3.4 RNA polymerase subunit sigma-24 compare
PP_4098 -1.1 -3.2 UvrABC system protein C compare
PP_2336 -1.1 -3.6 aconitate hydratase 1 compare
PP_4891 -1.1 -4.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4942 -1.1 -4.0 conserved protein of unknown function compare
PP_4993 -1.1 -4.8 Glutathione synthetase compare
PP_4130 -1.1 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5095 -1.1 -1.5 pyrroline-5-carboxylate reductase compare
PP_0339 -1.1 -3.2 Pyruvate dehydrogenase E1 component compare
PP_2932 -1.1 -5.8 Amidase family protein compare
PP_4892 -1.1 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0949 -1.0 -5.2 putative ATP-binding protein UPF0042 compare
PP_0184 -1.0 -6.2 Argininosuccinate lyase compare
PP_5025 -1.0 -7.5 Glucans biosynthesis glucosyltransferase H compare
PP_1187 -1.0 -5.9 sensor protein compare
PP_1719 -1.0 -6.5 Tail-specific protease prc compare
PP_0292 -1.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -1.0 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_4964 -1.0 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5583 -1.0 -2.4 conserved protein of unknown function compare
PP_2144 -1.0 -2.3 Transcriptional regulator, TetR family compare
PP_1214 -1.0 -3.7 putative transcriptional regulatory protein compare
PP_2044 -1.0 -2.1 conserved inner membrane protein of unknown function compare
PP_4199 -1.0 -1.4 putative Lipoprotein compare
PP_5310 -0.9 -5.8 junction-specific ATP-dependent DNA helicase compare
PP_5028 -0.9 -3.8 proline iminopeptidase compare
PP_3328 -0.9 -2.2 putative Ring-cleaving dioxygenase compare
PP_4532 -0.9 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0290 -0.9 -5.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -0.9 -5.1 phosphoserine phosphatase compare
PP_4131 -0.9 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_5393 -0.9 -1.6 putative metal-binding chaperone compare
PP_0401 -0.9 -2.4 Ribosomal RNA small subunit methyltransferase A compare
PP_4129 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4122 -0.9 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0888 -0.9 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_0872 -0.9 -4.9 Peptide chain release factor 3 compare
PP_5327 -0.9 -2.6 putative phosphate ABC transporter, permease subunit compare
PP_1262 -0.9 -5.7 LysR family transcriptional regulator compare
PP_0832 -0.9 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1428 -0.9 -2.1 Sigma factor AlgU negative regulatory protein compare
PP_1999 -0.8 -1.6 membrane protein required for colicin V production compare
PP_1264 -0.8 -5.8 putative Fusaric acid resistance protein compare
PP_4121 -0.8 -3.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1266 -0.8 -5.2 putative Fusaric acid resistance protein compare
PP_1045 -0.8 -2.2 Type II secretion pathway protein XcpP compare
PP_1022 -0.8 -3.7 glucose 6-phosphate-1-dehydrogenase compare
PP_4828 -0.8 -1.2 Precorrin-8X methylmutase compare
PP_4124 -0.8 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_4917 -0.8 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3378 -0.8 -2.1 putative 2-ketogluconokinase compare
PP_0003 -0.8 -3.5 16S RNA methyltransferase compare
PP_4120 -0.8 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_3043 -0.8 -1.8 conserved protein of unknown function compare
PP_4286 -0.8 -4.5 allantoinase compare
PP_5084 -0.8 -5.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1211 -0.8 -3.9 conserved protein of unknown function compare
PP_0150 -0.8 -2.7 conserved exported protein of unknown function compare
PP_0801 -0.8 -1.4 conserved exported protein of unknown function compare
PP_2442 -0.8 -1.8 conserved protein of unknown function, DUF480 family compare
PP_2433 -0.8 -1.9 conserved protein of unknown function compare
PP_5027 -0.8 -2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5026 -0.7 -5.2 Glucans biosynthesis protein G compare
PP_4988 -0.7 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5198 -0.7 -3.1 conserved protein of unknown function compare
PP_5309 -0.7 -3.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1632 -0.7 -2.0 conserved protein of unknown function compare
PP_1076 -0.7 -4.0 aquaglyceroporin compare
PP_0566 -0.7 -1.1 translation-related factor compare
PP_2441 -0.7 -2.5 conserved protein of unknown function compare
PP_1568 -0.7 -1.3 conserved protein of unknown function compare
PP_5090 -0.7 -1.7 putative cell division protein compare
PP_5045 -0.7 -2.6 tRNA sulfurtransferase compare
PP_2337 -0.7 -1.2 aconitate isomerase compare
PP_5058 -0.7 -3.1 Carboxy-terminal-processing protease compare
PP_2820 -0.7 -1.5 HTH-type transcriptional regulator nfxB compare
PP_1263 -0.7 -3.9 putative Fusaric acid resistance protein compare
PP_3935 -0.7 -2.5 conserved protein of unknown function compare
PP_0345 -0.7 -2.9 putative Heptose kinase WapP compare
PP_3989 -0.7 -2.3 DNA-cytosine methyltransferase compare
PP_1344 -0.7 -0.9 conserved protein of unknown function compare
PP_0405 -0.7 -4.9 conserved protein of unknown function compare
PP_3239 -0.7 -2.2 putative cointegrate resolution protein T Tn4652 compare
PP_1912 -0.7 -2.8 Phosphate acyltransferase compare
PP_1553 -0.7 -1.8 conserved protein of unknown function compare
PP_1493 -0.7 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3904 -0.7 -1.8 conserved protein of unknown function compare
PP_5230 -0.6 -2.2 Tyrosine recombinase XerC compare
PP_4793 -0.6 -1.7 conserved protein of unknown function compare
PP_0725 -0.6 -3.2 conserved hypothetical TPR repeat protein compare
PP_0841 -0.6 -3.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4480 -0.6 -4.2 arginine N-succinyltransferase, subunit alpha compare
PP_4697 -0.6 -1.7 poly(A) polymerase compare
PP_2378 -0.6 -1.9 Fe/S biogenesis protein NfuA compare
PP_3771 -0.6 -2.4 conserved protein of unknown function compare
PP_4610 -0.6 -4.3 conserved protein of unknown function containing PepSY-associated TM helix domain compare
PP_1783 -0.6 -1.3 dTDP-glucose pyrophosphorylase compare
PP_5048 -0.6 -3.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1265 -0.6 -2.0 conserved protein of unknown function compare
PP_1994 -0.6 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_1083 -0.6 -2.7 (2Fe-2S)-binding protein compare
PP_5610 -0.6 -0.7 protein of unknown function compare
PP_1346 -0.6 -3.1 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4875 -0.6 -2.1 conserved membrane protein of unknown function compare
PP_1528 -0.6 -1.1 conserved protein of unknown function compare
PP_4172 -0.6 -3.0 conserved exported protein of unknown function compare
PP_4609 -0.6 -2.6 conserved membrane protein of unknown function compare
PP_3916 -0.6 -1.8 conserved protein of unknown function compare
PP_2226 -0.6 -2.5 putative K(+)/H(+) antiporter subunit F compare
PP_4569 -0.6 -2.0 conserved protein of unknown function compare
PP_0484 -0.6 -2.6 transporter of an unknown substrate compare
PP_4340 -0.6 -1.4 response regulator for chemotactic signal transduction compare
PP_1935 -0.6 -2.1 Transcriptional regulator, Cro/CI family compare
PP_4204 -0.6 -2.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0758 -0.6 -2.6 conserved protein of unknown function compare
PP_2121 -0.6 -1.6 putative Lipoprotein compare
PP_0685 -0.6 -1.5 conserved protein of unknown function compare
PP_2124 -0.6 -3.0 putative Glycosyl transferase compare
PP_1304 -0.6 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5155 -0.6 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1206 -0.6 -3.8 basic-amino-acid specific porin OprD compare
PP_2000 -0.6 -0.6 amidophosphoribosyl transferase compare
PP_5350 -0.6 -2.6 Transcriptional regulator, RpiR family compare
PP_0855 -0.6 -1.0 conserved protein of unknown function compare
PP_5604 -0.6 -1.6 putative subtilisin-like serine protease compare
PP_4720 -0.6 -1.2 putative RNA binding protein compare
PP_1185 -0.6 -3.2 Outer membrane protein H1 compare
PP_5528 -0.6 -0.6 conserved protein of unknown function compare
PP_0509 -0.6 -2.5 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms