Experiment set36IT084 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0856 -5.4 -5.2 conserved lipoprotein of unknown function compare
PP_4700 -5.1 -3.5 pantothenate synthetase compare
PP_0691 -4.7 -4.6 Glutamate 5-kinase compare
PP_4265 -4.6 -3.2 DNA-binding transcriptional dual regulator compare
PP_4122 -4.6 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5706 -4.1 -4.4 Sec translocation complex - SecG subunit compare
PP_1654 -4.0 -2.8 cysteine synthase B compare
PP_4693 -4.0 -9.3 RNA polymerase-binding transcription factor DksA compare
PP_4799 -3.9 -2.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4724 -3.0 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_1001 -3.0 -5.1 arginine deiminase compare
PP_0719 -2.9 -2.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1664 -2.9 -5.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_3821 -2.9 -8.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1000 -2.9 -5.0 ornithine carbamoyltransferase, catabolic compare
PP_0999 -2.8 -6.0 carbamate kinase compare
PP_3999 -2.6 -8.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4723 -2.6 -4.4 Carbamoyl-phosphate synthase large chain compare
PP_4004 -2.6 -5.6 DNA translocase FtsK compare
PP_1215 -2.6 -4.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0593 -2.5 -1.2 putative ribosome-binding factor compare
PP_4120 -2.5 -5.6 NADH-quinone oxidoreductase subunit B compare
PP_2402 -2.4 -2.9 putative Sensor histidine kinase compare
PP_4902 -2.4 -4.0 Oligoribonuclease compare
PP_4804 -2.4 -4.3 RlpA-like lipoprotein compare
PP_1783 -2.3 -2.6 dTDP-glucose pyrophosphorylase compare
PP_4999 -2.3 -1.5 dihydroorotase-like protein compare
PP_4895 -2.2 -5.0 tRNA dimethylallyltransferase compare
PP_1020 -2.2 -3.0 putative glucose-6-phosphate 1-epimerase compare
PP_4129 -2.1 -4.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3098 -2.1 -1.5 conserved protein of unknown function compare
PP_0704 -2.0 -6.0 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2371 -2.0 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2441 -2.0 -4.2 conserved protein of unknown function compare
PP_0846 -2.0 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_0274 -2.0 -2.6 putative transcriptional regulator containing HTH domain compare
PP_4880 -1.8 -8.6 exoribonuclease R compare
PP_5216 -1.8 -2.1 exopolyphosphatase compare
PP_0888 -1.8 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0855 -1.8 -3.0 conserved protein of unknown function compare
PP_1002 -1.7 -5.6 arginine/ornithine antiporter compare
PP_4824 -1.7 -6.2 Sensor histidine kinase/response regulator compare
PP_1217 -1.7 -5.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1734 -1.7 -5.7 Probable septum site-determining protein MinC compare
PP_0406 -1.7 -2.4 Nucleotidyltransferase family protein compare
PP_2144 -1.7 -4.0 Transcriptional regulator, TetR family compare
PP_0566 -1.6 -1.5 translation-related factor compare
PP_1216 -1.6 -4.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2370 -1.6 -2.2 conserved protein of unknown function compare
PP_0833 -1.5 -1.9 queuine tRNA-ribosyltransferase compare
PP_2217 -1.5 -2.7 enoyl-CoA hydratase compare
PP_4785 -1.5 -5.4 conserved exported protein of unknown function compare
PP_5000 -1.5 -2.1 peptidase component of the ATP-dependent HslVU protease compare
PP_2328 -1.5 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_4560 -1.5 -4.4 putative Ribonuclease BN compare
PP_1598 -1.5 -3.2 regulatory intramembrane protein RIP zinc protease compare
PP_4008 -1.5 -6.4 ATP-dependent serine protease compare
PP_1164 -1.4 -2.2 Transcriptional regulator, LysR family compare
PP_0292 -1.4 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4964 -1.4 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_1198 -1.4 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4131 -1.4 -5.2 NADH-quinone oxidoreductase subunit N compare
PP_0998 -1.4 -4.7 conserved protein of unknown function compare
PP_4058 -1.4 -7.0 1,4-alpha-glucan branching enzyme compare
PP_4892 -1.4 -5.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4271 -1.4 -1.3 conserved protein of unknown function compare
PP_1353 -1.3 -1.7 conserved membrane protein of unknown function compare
PP_2226 -1.3 -3.2 putative K(+)/H(+) antiporter subunit F compare
PP_4755 -1.3 -9.7 Outer membrane ferrichrome-iron receptor compare
PP_2378 -1.3 -1.6 Fe/S biogenesis protein NfuA compare
PP_5486 -1.2 -2.6 conserved protein of unknown function compare
PP_4126 -1.2 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4642 -1.2 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_1208 -1.2 -1.9 conserved protein of unknown function, SlyX family compare
PP_0801 -1.2 -1.4 conserved exported protein of unknown function compare
PP_1733 -1.2 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_0345 -1.2 -3.7 putative Heptose kinase WapP compare
PP_4130 -1.2 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4874 -1.1 -1.1 50S ribosomal protein L9 compare
PP_1609 -1.1 -2.1 conserved protein of unknown function compare
PP_4994 -1.1 -3.2 conserved protein of unknown function compare
PP_4669 -1.1 -2.2 OmpA family protein compare
PP_4204 -1.1 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4937 -1.1 -3.5 toluene tolerance protein compare
PP_0001 -1.1 -1.2 probable chromosome-partitioning protein compare
PP_3241 -1.1 -1.1 conserved exported protein of unknown function compare
PP_4891 -1.1 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5329 -1.1 -3.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5327 -1.1 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_5026 -1.1 -4.7 Glucans biosynthesis protein G compare
PP_5025 -1.1 -5.5 Glucans biosynthesis glucosyltransferase H compare
PP_4546 -1.0 -2.9 ATP-dependent helicase HrpA compare
PP_4199 -1.0 -1.0 putative Lipoprotein compare
PP_4268 -1.0 -0.8 nucleoid-associated broad specificity regulator compare
PP_1187 -1.0 -4.6 sensor protein compare
PP_3239 -1.0 -2.4 putative cointegrate resolution protein T Tn4652 compare
PP_5253 -1.0 -2.3 Arylesterase compare
PP_2475 -0.9 -3.0 Transcriptional regulator, TetR family compare
PP_5110 -0.9 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3522 -0.9 -1.8 conserved protein of unknown function compare
PP_2748 -0.9 -1.7 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4094 -0.9 -2.1 conserved protein of unknown function compare
PP_2572 -0.9 -2.9 conserved protein of unknown function compare
PP_1731 -0.9 -2.2 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2073 -0.9 -1.5 Acetyltransferase, GNAT family compare
PP_5717 -0.9 -2.2 conserved protein of unknown function compare
PP_1055 -0.9 -1.2 Type II secretion pathway protein GspN compare
PP_1263 -0.9 -3.5 putative Fusaric acid resistance protein compare
PP_0254 -0.9 -2.3 conserved protein of unknown function compare
PP_1632 -0.9 -1.8 conserved protein of unknown function compare
PP_0184 -0.9 -4.2 Argininosuccinate lyase compare
PP_2145 -0.9 -2.1 beta-N-acetylglucosaminidase compare
PP_0127 -0.9 -2.4 Thiol:disulfide interchange protein compare
PP_3904 -0.9 -1.1 conserved protein of unknown function compare
PP_1097 -0.9 -0.8 Methionine--tRNA ligase compare
PP_4593 -0.9 -1.5 conserved protein of unknown function compare
PP_1214 -0.8 -2.7 putative transcriptional regulatory protein compare
PP_4009 -0.8 -1.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_2737 -0.8 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4471 -0.8 -3.1 Magnesium transporter compare
PP_1876 -0.8 -2.1 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1211 -0.8 -2.3 conserved protein of unknown function compare
PP_4909 -0.8 -3.6 phosphoserine phosphatase compare
PP_5294 -0.8 -3.7 Ribonuclease PH compare
PP_2299 -0.8 -2.5 Trigger factor compare
PP_4697 -0.8 -2.1 poly(A) polymerase compare
PP_3770 -0.8 -2.1 conserved protein of unknown function compare
PP_3411 -0.8 -1.2 conserved protein of unknown function compare
PP_0949 -0.8 -3.3 putative ATP-binding protein UPF0042 compare
PP_3048 -0.8 -1.9 conserved protein of unknown function compare
PP_4342 -0.8 -1.7 flagellar synthesis regulator, putative ATPase compare
PP_2932 -0.8 -3.3 Amidase family protein compare
PP_5310 -0.8 -3.9 junction-specific ATP-dependent DNA helicase compare
PP_5309 -0.8 -3.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0339 -0.8 -2.5 Pyruvate dehydrogenase E1 component compare
PP_0048 -0.8 -0.9 conserved protein of unknown function compare
PP_3916 -0.8 -2.3 conserved protein of unknown function compare
PP_0872 -0.8 -3.8 Peptide chain release factor 3 compare
PP_1820 -0.8 -3.0 Benzoate transport protein compare
PP_5048 -0.8 -3.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2397 -0.8 -1.8 EF hand domain protein compare
PP_1142 -0.8 -1.0 conserved protein of unknown function compare
PP_5328 -0.8 -0.9 putative phosphate transport system permease protein compare
PP_5583 -0.8 -1.5 conserved protein of unknown function compare
PP_4121 -0.8 -2.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1224 -0.7 -2.9 periplasmic subunit of the TolQRA transport system compare
PP_0290 -0.7 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0278 -0.7 -1.9 conserved protein of unknown function compare
PP_3116 -0.7 -2.4 transcriptional repressor compare
PP_0401 -0.7 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4820 -0.7 -2.8 tRNA-dihydrouridine synthase B compare
PP_5337 -0.7 -2.7 LysR family transcriptional regulator compare
PP_1013 -0.7 -2.6 Sensor histidine kinase compare
PP_t13 -0.7 -2.1 tRNA-Lys compare
PP_0643 -0.7 -1.2 protein of unknown function compare
PP_4482 -0.7 -2.2 Transcriptional regulator, AraC family compare
PP_1714 -0.7 -3.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_5139 -0.7 -2.9 cadmium translocating P-type ATPase compare
PP_2336 -0.7 -1.5 aconitate hydratase 1 compare
PP_4286 -0.7 -2.8 allantoinase compare
PP_2794 -0.7 -1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4944 -0.7 -1.6 Carbamoyltransferase compare
PP_0832 -0.7 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4792 -0.7 -1.7 conserved exported protein of unknown function compare
PP_4989 -0.7 -1.8 Protein PilJ compare
PP_1790 -0.7 -1.8 putative Acylneuraminate cytidylyltransferase compare
PP_4988 -0.7 -2.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3332 -0.7 -0.7 putative cytochrome c-type protein compare
PP_1569 -0.7 -2.5 conserved protein of unknown function compare
PP_0978 -0.7 -2.3 conserved protein of unknown function compare
PP_4917 -0.7 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4622 -0.7 -2.2 Hmg transcriptional repressor compare
PP_1268 -0.7 -1.5 putative HtrA suppressor protein sohA compare
PP_2815 -0.7 -1.6 conserved protein of unknown function compare
PP_3318 -0.7 -1.3 conserved protein of unknown function compare
PP_4980 -0.7 -3.3 ATP-dependent RNA helicase compare
PP_2302 -0.7 -2.5 DNA-binding, ATP-dependent protease compare
PP_5554 -0.7 -2.2 protein of unknown function compare
PP_4214 -0.7 -1.9 pyoverdine biosynthesis related protein compare
PP_1912 -0.7 -1.6 Phosphate acyltransferase compare
PP_1266 -0.7 -3.2 putative Fusaric acid resistance protein compare
PP_5714 -0.7 -1.7 conserved protein of unknown function compare
PP_4480 -0.7 -3.1 arginine N-succinyltransferase, subunit alpha compare
PP_2978 -0.7 -1.9 conserved protein of unknown function compare
PP_2087 -0.7 -1.6 CmpX protein compare
PP_1238 -0.7 -3.4 putative Lipoprotein compare
PP_5491 -0.7 -1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_0120 -0.7 -3.1 putative zinc ABC transporter compare
PP_1985 -0.7 -3.0 3-isopropylmalate dehydratase large subunit compare
PP_0495 -0.7 -3.3 type 1 L-asparaginase compare
PP_2908 -0.6 -1.4 DNA-binding transcriptional repressor compare
PP_3378 -0.6 -1.1 putative 2-ketogluconokinase compare
PP_2225 -0.6 -2.0 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_1508 -0.6 -1.5 conserved protein of unknown function compare
PP_3693 -0.6 -1.7 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3035 -0.6 -1.4 conserved protein of unknown function compare
PP_4793 -0.6 -1.4 conserved protein of unknown function compare
PP_1265 -0.6 -1.9 conserved protein of unknown function compare
PP_4124 -0.6 -1.7 NADH-quinone oxidoreductase subunit G compare
PP_1635 -0.6 -1.7 DNA-binding response regulator compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms