Experiment set36IT083 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.4 -3.7 Glutamate 5-kinase compare
PP_1237 -5.3 -3.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0856 -5.0 -6.8 conserved lipoprotein of unknown function compare
PP_4265 -4.2 -4.1 DNA-binding transcriptional dual regulator compare
PP_4700 -4.1 -5.6 pantothenate synthetase compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4693 -3.2 -6.8 RNA polymerase-binding transcription factor DksA compare
PP_3999 -3.0 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -2.9 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_1654 -2.8 -4.6 cysteine synthase B compare
PP_0719 -2.8 -2.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5706 -2.6 -3.3 Sec translocation complex - SecG subunit compare
PP_4560 -2.6 -6.3 putative Ribonuclease BN compare
PP_2402 -2.6 -4.6 putative Sensor histidine kinase compare
PP_1201 -2.6 -8.1 conserved exported protein of unknown function compare
PP_4723 -2.6 -3.9 Carbamoyl-phosphate synthase large chain compare
PP_1001 -2.6 -6.8 arginine deiminase compare
PP_1215 -2.5 -4.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_3821 -2.4 -11.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4004 -2.4 -9.5 DNA translocase FtsK compare
PP_2371 -2.3 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1202 -2.2 -13.0 putative enzyme involved in modification of phospholipids compare
PP_1232 -2.2 -11.3 conserved exported protein of unknown function compare
PP_0393 -2.2 -3.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0833 -2.2 -3.5 queuine tRNA-ribosyltransferase compare
PP_1734 -2.2 -7.7 Probable septum site-determining protein MinC compare
PP_4804 -2.1 -4.9 RlpA-like lipoprotein compare
PP_4895 -2.1 -5.2 tRNA dimethylallyltransferase compare
PP_1000 -2.0 -6.1 ornithine carbamoyltransferase, catabolic compare
PP_4342 -1.9 -4.7 flagellar synthesis regulator, putative ATPase compare
PP_4008 -1.9 -8.6 ATP-dependent serine protease compare
PP_1002 -1.8 -7.3 arginine/ornithine antiporter compare
PP_1664 -1.8 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_2145 -1.8 -5.0 beta-N-acetylglucosaminidase compare
PP_4994 -1.8 -5.3 conserved protein of unknown function compare
PP_5329 -1.7 -4.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0127 -1.7 -5.7 Thiol:disulfide interchange protein compare
PP_1733 -1.7 -6.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_2370 -1.7 -2.6 conserved protein of unknown function compare
PP_4058 -1.7 -10.1 1,4-alpha-glucan branching enzyme compare
PP_4880 -1.7 -10.2 exoribonuclease R compare
PP_0999 -1.7 -5.1 carbamate kinase compare
PP_5327 -1.7 -4.4 putative phosphate ABC transporter, permease subunit compare
PP_4999 -1.7 -1.6 dihydroorotase-like protein compare
PP_0704 -1.7 -6.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1353 -1.6 -3.5 conserved membrane protein of unknown function compare
PP_1898 -1.6 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_1217 -1.6 -6.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1719 -1.6 -8.3 Tail-specific protease prc compare
PP_0998 -1.6 -6.2 conserved protein of unknown function compare
PP_1186 -1.5 -3.8 two component system DNA-binding transcriptional dual regulator compare
PP_4755 -1.5 -12.9 Outer membrane ferrichrome-iron receptor compare
PP_4098 -1.5 -3.1 UvrABC system protein C compare
PP_2378 -1.5 -2.9 Fe/S biogenesis protein NfuA compare
PP_2328 -1.5 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_0846 -1.5 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_1428 -1.4 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_1598 -1.4 -4.4 regulatory intramembrane protein RIP zinc protease compare
PP_0959 -1.4 -1.9 phospholipid ABC transporter compare
PP_4129 -1.3 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4961 -1.3 -3.2 putative Lipoprotein compare
PP_1216 -1.3 -4.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1187 -1.3 -6.1 sensor protein compare
PP_4785 -1.2 -5.3 conserved exported protein of unknown function compare
PP_0003 -1.2 -4.5 16S RNA methyltransferase compare
PP_3840 -1.2 -2.2 conserved protein of unknown function compare
PP_2336 -1.2 -3.1 aconitate hydratase 1 compare
PP_4546 -1.2 -4.5 ATP-dependent helicase HrpA compare
PP_0566 -1.1 -1.6 translation-related factor compare
PP_4824 -1.1 -5.3 Sensor histidine kinase/response regulator compare
PP_1994 -1.1 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4902 -1.1 -2.9 Oligoribonuclease compare
PP_4909 -1.1 -5.5 phosphoserine phosphatase compare
PP_t12 -1.1 -1.6 tRNA-Thr compare
PP_4937 -1.1 -4.2 toluene tolerance protein compare
PP_1468 -1.1 -3.1 Tyrosine recombinase XerD compare
PP_1268 -1.1 -3.7 putative HtrA suppressor protein sohA compare
PP_1208 -1.1 -3.1 conserved protein of unknown function, SlyX family compare
PP_5328 -1.1 -2.0 putative phosphate transport system permease protein compare
PP_0888 -1.0 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0293 -1.0 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4094 -1.0 -3.0 conserved protein of unknown function compare
PP_1076 -1.0 -4.9 aquaglyceroporin compare
PP_1589 -1.0 -6.3 uridylyltransferase compare
PP_1632 -1.0 -2.8 conserved protein of unknown function compare
PP_4892 -1.0 -4.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4066 -1.0 -2.6 methylglutaconyl-CoA hydratase compare
PP_2847 -1.0 -2.5 Urease accessory protein UreJ compare
PP_0164 -1.0 -4.2 conserved protein of unknown function compare
PP_0725 -1.0 -4.2 conserved hypothetical TPR repeat protein compare
PP_5198 -1.0 -2.9 conserved protein of unknown function compare
PP_4993 -1.0 -4.8 Glutathione synthetase compare
PP_1198 -1.0 -3.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0673 -1.0 -2.8 conserved protein of unknown function compare
PP_0401 -1.0 -3.8 Ribosomal RNA small subunit methyltransferase A compare
PP_5058 -1.0 -4.2 Carboxy-terminal-processing protease compare
PP_2932 -0.9 -5.6 Amidase family protein compare
PP_2575 -0.9 -2.3 conserved exported protein of unknown function compare
PP_4891 -0.9 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5048 -0.9 -4.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1783 -0.9 -1.8 dTDP-glucose pyrophosphorylase compare
PP_5486 -0.9 -2.1 conserved protein of unknown function compare
PP_5028 -0.9 -2.6 proline iminopeptidase compare
PP_4131 -0.9 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_5652 -0.9 -2.5 conserved protein of unknown function, phage origin compare
PP_5185 -0.9 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4697 -0.9 -2.3 poly(A) polymerase compare
PP_1088 -0.9 -6.6 Argininosuccinate synthase compare
PP_5026 -0.9 -5.7 Glucans biosynthesis protein G compare
PP_4214 -0.9 -2.2 pyoverdine biosynthesis related protein compare
PP_2225 -0.9 -3.5 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_5583 -0.9 -1.6 conserved protein of unknown function compare
PP_4204 -0.9 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1764 -0.8 -2.4 Phosphoglycolate phosphatase 2 compare
PP_2327 -0.8 -4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4874 -0.8 -1.0 50S ribosomal protein L9 compare
PP_4875 -0.8 -2.6 conserved membrane protein of unknown function compare
PP_2144 -0.8 -2.6 Transcriptional regulator, TetR family compare
PP_0855 -0.8 -1.5 conserved protein of unknown function compare
PP_2088 -0.8 -2.5 RNA polymerase sigma factor SigX compare
PP_4215 -0.8 -3.1 pyoverdine biosynthesis related protein compare
PP_0290 -0.8 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -0.8 -3.9 tryptophan synthase alpha chain compare
PP_3555 -0.8 -4.2 putative Transmembrane sensor compare
PP_1262 -0.8 -5.7 LysR family transcriptional regulator compare
PP_5084 -0.8 -5.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4609 -0.8 -3.6 conserved membrane protein of unknown function compare
PP_0809 -0.8 -5.4 disulfide bond formation protein B compare
PP_1214 -0.8 -2.7 putative transcriptional regulatory protein compare
PP_2737 -0.8 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2433 -0.8 -1.7 conserved protein of unknown function compare
PP_4793 -0.8 -1.6 conserved protein of unknown function compare
PP_1568 -0.8 -1.4 conserved protein of unknown function compare
PP_5025 -0.8 -5.8 Glucans biosynthesis glucosyltransferase H compare
PP_5350 -0.8 -2.6 Transcriptional regulator, RpiR family compare
PP_4917 -0.7 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4121 -0.7 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4610 -0.7 -5.2 conserved protein of unknown function containing PepSY-associated TM helix domain compare
PP_4130 -0.7 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0872 -0.7 -3.7 Peptide chain release factor 3 compare
PP_4964 -0.7 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1344 -0.7 -0.9 conserved protein of unknown function compare
PP_t29 -0.7 -1.9 tRNA-Ala compare
PP_2898 -0.7 -2.4 conserved exported protein of unknown function compare
PP_1303 -0.7 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_1238 -0.7 -4.3 putative Lipoprotein compare
PP_4364 -0.7 -2.7 putative Anti-sigma F factor antagonist compare
PP_2087 -0.7 -2.4 CmpX protein compare
PP_5310 -0.7 -3.9 junction-specific ATP-dependent DNA helicase compare
PP_5309 -0.7 -3.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4988 -0.7 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4124 -0.7 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_1022 -0.7 -3.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0292 -0.7 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5216 -0.7 -1.3 exopolyphosphatase compare
PP_0184 -0.7 -3.7 Argininosuccinate lyase compare
PP_4696 -0.7 -3.4 Nitrogen regulation protein NR(I) compare
PP_4836 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2337 -0.7 -1.8 aconitate isomerase compare
PP_4120 -0.7 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_4684 -0.7 -4.4 conserved protein of unknown function with kinase-like domain compare
PP_0958 -0.7 -3.4 phospholipid ABC transporter ATP-binding subunit compare
PP_0913 -0.7 -4.3 conserved exported protein of unknown function compare
PP_1304 -0.7 -4.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2999 -0.7 -1.3 Glyoxalase family protein compare
PP_3614 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_4340 -0.7 -2.5 response regulator for chemotactic signal transduction compare
PP_0949 -0.6 -3.2 putative ATP-binding protein UPF0042 compare
PP_4172 -0.6 -3.6 conserved exported protein of unknown function compare
PP_4503 -0.6 -2.3 DNA-binding response regulator compare
PP_5095 -0.6 -0.7 pyrroline-5-carboxylate reductase compare
PP_1079 -0.6 -3.2 Ornithine carbamoyltransferase compare
PP_2107 -0.6 -1.5 conserved protein of unknown function compare
PP_1912 -0.6 -3.0 Phosphate acyltransferase compare
PP_4136 -0.6 -1.2 Transcriptional regulator, LuxR family compare
PP_1185 -0.6 -3.1 Outer membrane protein H1 compare
PP_1263 -0.6 -3.1 putative Fusaric acid resistance protein compare
PP_4726 -0.6 -1.9 Chaperone protein DnaJ compare
PP_3946 -0.6 -1.4 HTH-type transcriptional repressor NicR compare
PP_1264 -0.6 -4.6 putative Fusaric acid resistance protein compare
PP_1635 -0.6 -1.8 DNA-binding response regulator compare
PP_3073 -0.6 -2.8 3-hydroxybutyrate dehydrogenase compare
PP_1204 -0.6 -3.4 putative Lipoprotein compare
PP_4286 -0.6 -3.3 allantoinase compare
PP_5155 -0.6 -2.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0120 -0.6 -3.1 putative zinc ABC transporter compare
PP_1206 -0.6 -3.5 basic-amino-acid specific porin OprD compare
PP_2640 -0.6 -1.6 Acetyltransferase, GNAT family compare
PP_2148 -0.6 -4.4 transcription-repair coupling factor compare
PP_0630 -0.6 -1.0 DNA gyrase inhibitor YacG compare
PP_2229 -0.6 -1.7 putative K(+)/H(+) antiporter subunit C compare
PP_2247 -0.6 -1.6 putative Endoribonuclease compare
PP_4338 -0.6 -3.6 Chemotaxis histidine kinase CheA compare
PP_5045 -0.6 -2.0 tRNA sulfurtransferase compare
PP_2409 -0.6 -2.3 cobalt-zinc-cadmium resistance protein compare
PP_0065 -0.6 -2.4 NAD-binding component of TrK potassium transporter compare
PP_5430 -0.6 -2.4 protein of unknown function compare
PP_4213 -0.6 -1.5 putative dipeptidase compare
PP_2172 -0.6 -2.0 conserved exported protein of unknown function compare
PP_1362 -0.6 -1.9 pyruvate kinase II compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms