Experiment set36IT083 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most detrimental genes:

  gene name fitness t score description  
PP_1109 +2.7 22.8 Transcriptional regulator, GntR family compare
PP_1110 +2.5 4.6 serine acetyltransferase compare
PP_1111 +2.2 7.2 putative Synthetase compare
PP_1650 +2.2 19.6 Sensor protein GacS compare
PP_4099 +2.0 16.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1778 +1.3 9.0 Lipopolysaccharide ABC export system, permease protein compare
PP_0138 +1.1 8.0 conserved membrane protein of unknown function compare
PP_3245 +1.1 2.2 conserved protein of unknown function compare
PP_0547 +1.1 5.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0246 +0.9 3.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_1269 +0.9 1.8 Universal stress protein family compare
PP_2331 +0.9 5.1 conserved membrane protein of unknown function compare
PP_0593 +0.9 1.3 putative ribosome-binding factor compare
PP_1410 +0.9 1.8 conserved protein of unknown function compare
PP_5145 +0.8 7.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1655 +0.8 3.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0195 +0.8 2.6 conserved protein of unknown function compare
PP_1623 +0.8 6.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_1713 +0.8 2.3 Transcriptional regulator PcaQ compare
PP_2330 +0.8 4.5 conserved protein of unknown function compare
PP_5505 +0.8 1.7 conserved transmembrane protein of unknown function compare
PP_1176 +0.8 1.4 conserved protein of unknown function compare
PP_3883 +0.8 3.2 putative Phage holin compare
PP_1779 +0.8 5.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3392 +0.8 2.1 conserved protein of unknown function compare
PP_5054 +0.7 1.3 glutaredoxin 3 compare
PP_4470 +0.7 2.0 putative transcriptional regulator (Arc domain-containing) compare
PP_4768 +0.7 2.7 Exonuclease compare
PP_1113 +0.7 4.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5267 +0.7 2.2 putative cytochrome c5 compare
PP_2260 +0.7 3.4 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_4208 +0.7 4.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4196 +0.7 2.1 conserved exported protein of unknown function compare
PP_2889 +0.7 3.0 putative Transmembrane regulator PrtR compare
PP_0627 +0.7 1.6 conserved protein of unknown function compare
PP_3365 +0.7 1.3 Acetolactate synthase compare
PP_3876 +0.6 2.2 conserved protein of unknown function compare
PP_1812 +0.6 2.4 conserved protein of unknown function compare
PP_4217 +0.6 5.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0781 +0.6 1.9 conserved protein of unknown function compare
PP_2025 +0.6 1.9 Exonuclease SbcD compare
PP_0025 +0.6 1.2 hypothetical protein compare
PP_5038 +0.6 2.6 conserved lipoprotein of unknown function compare
PP_5471 +0.6 1.3 putative response regulator receiver protein compare
PP_4054 +0.6 1.4 conserved protein of unknown function compare
PP_4528 +0.6 1.6 conserved protein of unknown function compare
PP_2118 +0.6 1.1 conserved protein of unknown function compare
PP_5594 +0.6 1.2 conserved protein of unknown function compare
PP_1224 +0.6 3.3 periplasmic subunit of the TolQRA transport system compare
PP_t49 +0.6 3.3 tRNA-Met compare
PP_5008 +0.6 1.1 Poly granule-associated protein compare
PP_1236 +0.6 2.7 putative Glycine cleavage system transcriptional repressor compare
PP_0306 +0.5 1.4 conserved protein of unknown function compare
PP_2046 +0.5 2.6 Transcriptional regulator, LysR family compare
PP_4561 +0.5 0.8 stress response protein compare
PP_0683 +0.5 1.4 conserved protein of unknown function compare
PP_0640 +0.5 1.6 conserved protein of unknown function compare
PP_2650 +0.5 1.8 putative 4-hydroxybutyrate dehydrogenase compare
PP_4957 +0.5 1.9 conserved protein of unknown function compare
PP_3814 +0.5 2.7 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_2054 +0.5 2.0 putative DNA-binding transcriptional regulator compare
PP_2813 +0.5 2.0 BNR domain protein compare
PP_1729 +0.5 1.7 conserved protein of unknown function compare
PP_2939 +0.5 1.6 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2681 +0.5 0.8 coenzyme PQQ synthesis protein D compare
PP_2499 +0.5 1.4 conserved protein of unknown function compare
PP_2533 +0.5 1.9 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2078 +0.5 1.5 transcriptional activator protein LysR compare
PP_4244 +0.5 3.5 alternative sigma factor compare
PP_4940 +0.5 3.6 Putative glycosyltransferase compare
PP_3726 +0.5 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_5640 +0.5 1.9 conserved protein of unknown function compare
PP_2422 +0.5 2.2 conserved protein of unknown function compare
PP_3505 +0.5 1.8 conserved protein of unknown function compare
PP_0536 +0.5 1.6 conserved protein of unknown function compare
PP_2809 +0.5 1.9 conserved membrane protein of unknown function compare
PP_1535 +0.5 1.7 putative Methyltransferase compare
PP_2773 +0.5 1.3 conserved protein of unknown function compare
PP_0948 +0.5 1.1 Phosphocarrier protein HPr compare
PP_4159 +0.5 2.0 Potassium-transporting ATPase C chain compare
PP_2950 +0.5 1.4 conserved protein of unknown function compare
PP_5070 +0.5 2.9 ParA family protein compare
PP_1413 +0.5 3.1 Uracil-DNA glycosylase compare
PP_3307 +0.5 1.0 conserved protein of unknown function compare
PP_3792 +0.5 1.9 conserved protein of unknown function compare
PP_1777 +0.5 3.8 phosphomannomutase compare
PP_2653 +0.5 1.6 Transcriptional regulator, Cro/CI family compare
PP_1799 +0.5 3.6 GDP-mannose 4,6-dehydratase compare
PP_2067 +0.5 1.9 putative EmrB/QacA family drug resistance transporter compare
PP_5051 +0.4 1.4 conserved protein of unknown function compare
PP_4386 +0.4 2.4 flagellar basal-body rod protein FlgF compare
PP_3899 +0.4 1.5 conserved protein of unknown function, hicB family compare
PP_3810 +0.4 0.9 conserved protein of unknown function compare
PP_3880 +0.4 1.0 conserved exported protein of unknown function compare
PP_4133 +0.4 1.4 Transcriptional regulator-related protein compare
PP_1683 +0.4 1.4 Transcriptional regulator, MarR family compare
PP_4126 +0.4 0.9 NADH-quinone oxidoreductase subunit I compare
PP_t64 +0.4 2.0 tRNA-Gly compare
PP_2700 +0.4 1.2 AhpC/TSA family protein compare
PP_3460 +0.4 1.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2031 +0.4 1.7 conserved protein of unknown function compare
PP_1160 +0.4 3.2 Asparaginase family protein compare
PP_0273 +0.4 1.3 conserved protein of unknown function compare
PP_3874 +0.4 1.6 conserved protein of unknown function compare
PP_0396 +0.4 3.4 conserved protein of unknown function compare
PP_3906 +0.4 1.6 conserved protein of unknown function compare
PP_0058 +0.4 3.4 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_5565 +0.4 2.1 conserved protein of unknown function compare
PP_1930 +0.4 1.9 arsenic resistance transcriptional regulator compare
PP_3956 +0.4 2.0 conserved protein of unknown function compare
PP_1489 +0.4 1.0 CheW domain protein compare
PP_5191 +0.4 1.5 conserved exported protein of unknown function compare
PP_4010 +0.4 2.3 DNA replication inhibitor compare
PP_2261 +0.4 3.0 Sugar ABC transporter, ATP-binding protein compare
PP_1051 +0.4 1.8 Type II secretion pathway protein XcpV compare
PP_3341 +0.4 1.6 nickel-responsive regulator compare
PP_3117 +0.4 1.5 putative protein involved in error-prone processing of DNA lesions compare
PP_4355 +0.4 1.1 flagellar export apparatus subunit compare
PP_5243 +0.4 2.3 putative hydrolase compare
PP_4739 +0.4 1.6 conserved protein of unknown function compare
PP_4391 +0.4 1.7 flagellar basal-body rod protein FlgB compare
PP_4464 +0.4 1.8 Transcriptional regulator, LysR family compare
PP_3888 +0.4 1.8 conserved protein of unknown function compare
PP_1494 +0.4 1.8 Response regulator/GGDEF domain protein compare
PP_0153 +0.4 1.1 hypothetical protein compare
PP_1112 +0.4 2.8 conserved membrane protein of unknown function compare
PP_2414 +0.4 0.8 conserved exported protein of unknown function compare
PP_2848 +0.4 1.3 urease accessory protein compare
PP_1669 +0.4 2.9 NLP/P60 family protein compare
PP_1138 +0.4 2.2 branched chain amino acid transporter - ATP binding subunit compare
PP_3228 +0.4 1.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_5143 +0.4 1.5 conserved membrane protein of unknown function compare
PP_2232 +0.4 2.1 XRE family transcriptional regulator compare
PP_4541 +0.4 2.0 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_0395 +0.4 3.2 putative type IV piliation protein compare
PP_3217 +0.4 2.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_1235 +0.4 2.1 AhpC/TSA family protein compare
PP_4156 +0.4 1.1 Transcriptional regulator, LysR family compare
PP_4910 +0.4 1.2 conserved protein of unknown function compare
PP_5445 +0.4 1.0 conserved protein of unknown function compare
PP_4389 +0.4 2.2 Flagellar basal-body rod modification protein FlgD compare
PP_3952 +0.4 2.7 3-oxoadipate CoA-transferase subunit A compare
PP_2514 +0.4 1.4 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_1199 +0.4 2.5 toxin-antitoxin system, higB toxin like compare
PP_0801 +0.4 0.9 conserved exported protein of unknown function compare
PP_5241 +0.4 1.1 DNA-binding response regulator, LuxR family compare
PP_2987 +0.4 1.8 conserved protein of unknown function compare
PP_5313 +0.4 0.7 DNA-binding protein HU-alpha compare
PP_3765 +0.4 1.2 H-NS family protein MvaT compare
PP_5457 +0.4 1.7 conserved protein of unknown function compare
PP_3643 +0.4 1.3 putative Oxidoreductase compare
PP_1739 +0.4 1.2 conserved membrane protein of unknown function compare
PP_1803 +0.4 3.0 UDP-sugar epimerase compare
PP_2504 +0.4 1.3 putative tautomerase K2 compare
PP_2816 +0.4 1.7 putative Transcriptional regulator NfxB compare
PP_0656 +0.4 1.8 putative Amino acid ABC transporter, permease protein compare
PP_1628 +0.4 1.7 NMN amidohydrolase compare
PP_2379 +0.4 1.8 putative cytochrome oxidase biogenesis protein compare
PP_1790 +0.4 1.2 putative Acylneuraminate cytidylyltransferase compare
PP_0368 +0.4 2.9 putative Acyl-CoA dehydrogenase compare
PP_3312 +0.4 0.9 putative Heat shock protein compare
PP_5525 +0.4 1.6 conserved exported protein of unknown function compare
PP_1684 +0.4 2.3 putative Transporter compare
PP_2332 +0.4 1.3 conserved exported protein of unknown function compare
PP_5042 +0.4 1.5 conserved protein of unknown function compare
PP_1074 +0.4 1.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5456 +0.4 1.0 conserved protein of unknown function compare
PP_5157 +0.4 1.6 conserved exported protein of unknown function compare
PP_4101 +0.4 1.9 Acetyltransferase, GNAT family compare
PP_2836 +0.4 1.5 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_5200 +0.4 2.1 proline aminopeptidase P II compare
PP_0042 +0.4 1.7 conserved exported protein of unknown function compare
PP_2376 +0.4 2.9 Esterified fatty acid cis/trans isomerase compare
PP_0425 +0.4 0.9 conserved protein of unknown function compare
PP_0240 +0.3 1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1368 +0.3 1.6 putative membrane protein containing a glycosyltransferase domain compare
PP_5140 +0.3 1.6 Transcriptional regulator, MerR family compare
PP_4662 +0.3 1.3 conserved protein of unknown function compare
PP_1512 +0.3 1.6 conserved protein of unknown function compare
PP_2055 +0.3 1.6 putative isomerase compare
PP_2175 +0.3 2.0 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0862 +0.3 1.7 PKHD-type hydroxylase PP_0862 compare
PP_4904 +0.3 2.4 Flagellar motor rotation protein compare
PP_3375 +0.3 2.0 endonuclease I compare
PP_2883 +0.3 1.0 conserved protein of unknown function compare
PP_1804 +0.3 2.5 Glycosyl transferase WbpL compare
PP_2168 +0.3 2.3 Transaldolase compare
PP_2290 +0.3 1.5 conserved protein of unknown function compare
PP_0805 +0.3 2.4 Outer membrane efflux protein compare
PP_5473 +0.3 0.8 putative transcriptional regulator, LuxR family compare
PP_0062 +0.3 1.2 3-methyl-adenine DNA glycosylase I compare
PP_4249 +0.3 1.5 conserved protein of unknown function compare
PP_2157 +0.3 2.4 Sensor histidine kinase compare
PP_5093 +0.3 0.6 twitching motility protein compare
PP_3710 +0.3 2.4 conserved protein of unknown function compare
PP_4171 +0.3 2.8 conserved exported protein of unknown function compare
PP_0574 +0.3 2.7 DNA-binding response regulator, LuxR family compare
PP_3730 +0.3 1.2 Transcriptional regulatory protein AruR compare
PP_4050 +0.3 2.9 glycogen synthase compare
PP_4105 +0.3 1.9 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms