Experiment set36IT082 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most important genes:

  gene name fitness t score description  
PP_2320 -8.4 -8.2 conserved exported protein of unknown function compare
PP_2322 -7.6 -5.2 Major outer membrane lipoprotein compare
PP_0127 -7.4 -5.1 Thiol:disulfide interchange protein compare
PP_4994 -6.3 -4.4 conserved protein of unknown function compare
PP_0809 -6.1 -9.3 disulfide bond formation protein B compare
PP_0063 -6.0 -4.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0856 -5.5 -3.8 conserved lipoprotein of unknown function compare
PP_1898 -5.5 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_3821 -5.5 -11.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1202 -5.1 -19.6 putative enzyme involved in modification of phospholipids conserved
PP_1201 -5.0 -9.0 conserved exported protein of unknown function compare
PP_5706 -5.0 -4.3 Sec translocation complex - SecG subunit compare
PP_0184 -4.9 -9.7 Argininosuccinate lyase compare
PP_5202 -4.9 -2.8 putative cell division protein compare
PP_4943 -4.8 -3.1 putative Glycosyl transferase compare
PP_1598 -4.8 -7.0 regulatory intramembrane protein RIP zinc protease compare
PP_5218 -4.8 -7.7 DedA family protein compare
PP_4342 -4.6 -6.1 flagellar synthesis regulator, putative ATPase compare
PP_2402 -4.5 -3.6 putative Sensor histidine kinase compare
PP_4804 -4.5 -4.4 RlpA-like lipoprotein compare
PP_4364 -4.5 -4.7 putative Anti-sigma F factor antagonist compare
PP_2371 -4.4 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5053 -4.4 -9.7 Protein-export protein SecB compare
PP_4700 -4.4 -4.2 pantothenate synthetase compare
PP_4937 -4.3 -6.7 toluene tolerance protein compare
PP_2328 -4.3 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_1215 -4.1 -3.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_3999 -4.1 -7.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0345 -4.1 -5.6 putative Heptose kinase WapP compare
PP_4693 -4.0 -9.0 RNA polymerase-binding transcription factor DksA compare
PP_5652 -4.0 -3.3 conserved protein of unknown function, phage origin compare
PP_4902 -3.9 -4.1 Oligoribonuclease compare
PP_2087 -3.9 -3.4 CmpX protein compare
PP_4058 -3.9 -13.1 1,4-alpha-glucan branching enzyme compare
PP_0833 -3.8 -2.6 queuine tRNA-ribosyltransferase compare
PP_4755 -3.8 -20.4 Outer membrane ferrichrome-iron receptor compare
PP_1733 -3.8 -6.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1000 -3.7 -7.5 ornithine carbamoyltransferase, catabolic compare
PP_0185 -3.6 -10.7 Positive alginate biosynthesis regulatory protein compare
PP_4799 -3.6 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1079 -3.5 -6.5 Ornithine carbamoyltransferase compare
PP_1088 -3.5 -14.5 Argininosuccinate synthase compare
PP_5146 -3.5 -11.0 RNA pyrophosphohydrolase compare
PP_4265 -3.4 -3.8 DNA-binding transcriptional dual regulator compare
PP_4874 -3.4 -1.6 50S ribosomal protein L9 compare
PP_1695 -3.4 -9.0 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1654 -3.3 -3.2 cysteine synthase B compare
PP_4560 -3.3 -5.9 putative Ribonuclease BN compare
PP_1719 -3.2 -10.5 Tail-specific protease prc compare
PP_4009 -3.2 -5.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_5331 -3.2 -4.1 Long-chain acyl-CoA thioester hydrolase compare
PP_1802 -3.2 -15.8 glycosyl transferase compare
PP_2145 -3.2 -4.8 beta-N-acetylglucosaminidase compare
PP_0164 -3.2 -8.3 conserved protein of unknown function compare
PP_4824 -3.2 -9.9 Sensor histidine kinase/response regulator compare
PP_4941 -3.1 -9.0 conserved exported protein of unknown function compare
PP_5322 -3.1 -8.5 putative metal ion transporter compare
PP_5289 -3.1 -5.7 Acetylglutamate kinase compare
PP_5185 -3.1 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1002 -3.1 -7.9 arginine/ornithine antiporter compare
PP_0188 -3.1 -5.3 putative Uroporphyrin-III C-methyltransferase compare
PP_4917 -3.1 -5.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1460 -3.1 -11.2 putative Membrane protein compare
PP_4610 -3.1 -10.6 conserved protein of unknown function containing PepSY-associated TM helix domain conserved
PP_1635 -3.0 -2.5 DNA-binding response regulator compare
PP_0949 -2.9 -8.7 putative ATP-binding protein UPF0042 compare
PP_1355 -2.9 -10.7 Muropeptide permease AmpG compare
PP_1001 -2.9 -5.8 arginine deiminase compare
PP_2370 -2.9 -2.9 conserved protein of unknown function compare
PP_1082 -2.9 -5.9 bacterioferritin compare
PP_2168 -2.9 -10.3 Transaldolase compare
PP_4609 -2.9 -5.6 conserved membrane protein of unknown function compare
PP_4143 -2.8 -3.8 conserved protein of unknown function compare
PP_5090 -2.8 -2.5 putative cell division protein compare
PP_0704 -2.8 -5.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1216 -2.8 -5.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4505 -2.8 -7.8 Sensor histidine kinase compare
PP_2889 -2.8 -5.3 putative Transmembrane regulator PrtR compare
PP_1078 -2.8 -7.6 putative ABC transporter, ATP-binding protein compare
PP_5026 -2.7 -9.8 Glucans biosynthesis protein G compare
PP_4909 -2.7 -8.5 phosphoserine phosphatase compare
PP_1776 -2.7 -13.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4004 -2.7 -5.5 DNA translocase FtsK compare
PP_4880 -2.7 -12.6 exoribonuclease R compare
PP_0405 -2.7 -11.1 conserved protein of unknown function compare
PP_2348 -2.7 -5.0 Sensor histidine kinase compare
PP_1734 -2.6 -5.0 Probable septum site-determining protein MinC compare
PP_0999 -2.6 -4.3 carbamate kinase compare
PP_0910 -2.6 -8.0 conserved exported protein of unknown function compare
PP_0938 -2.6 -12.2 conserved protein of unknown function compare
PP_0908 -2.6 -8.1 conserved exported protein of unknown function compare
PP_1428 -2.6 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_0111 -2.6 -7.4 Electron transport protein SCO1/SenC compare
PP_0401 -2.5 -5.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1468 -2.5 -4.6 Tyrosine recombinase XerD compare
PP_0691 -2.5 -2.2 Glutamate 5-kinase compare
PP_1034 -2.5 -12.5 multicopper oxidase compare
PP_4891 -2.5 -6.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1800 -2.5 -10.2 Oxidoreductase Rmd compare
PP_5350 -2.5 -4.6 Transcriptional regulator, RpiR family compare
PP_4882 -2.5 -9.8 Iron ABC transporter, permease protein conserved
PP_4895 -2.5 -4.2 tRNA dimethylallyltransferase compare
PP_0914 -2.5 -9.4 GGDEF domain protein compare
PP_1237 -2.5 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1805 -2.5 -15.7 Polysaccharide biosynthesis protein compare
PP_1664 -2.5 -4.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1238 -2.5 -6.7 putative Lipoprotein compare
PP_0484 -2.4 -5.3 transporter of an unknown substrate compare
PP_0247 -2.4 -10.9 Osmolarity sensor protein EnvZ compare
PP_1083 -2.4 -6.6 (2Fe-2S)-binding protein compare
PP_1804 -2.4 -9.7 Glycosyl transferase WbpL compare
PP_1918 -2.4 -11.2 septation protein compare
PP_4150 -2.4 -5.1 microcin C transporter - ATP binding subunit conserved
PP_4723 -2.3 -2.8 Carbamoyl-phosphate synthase large chain compare
PP_0117 -2.3 -5.1 Zn(2+) ABC transporter - permease subunit compare
PP_1801 -2.3 -10.4 Glycosyl transferase WbpY compare
PP_0434 -2.3 -4.8 Anhydro-N-acetylmuramic acid kinase compare
PP_0913 -2.3 -7.8 conserved exported protein of unknown function compare
PP_1587 -2.3 -8.4 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_4724 -2.3 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_0290 -2.3 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0120 -2.3 -6.3 putative zinc ABC transporter compare
PP_4697 -2.2 -3.9 poly(A) polymerase compare
PP_1217 -2.2 -5.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5327 -2.2 -4.3 putative phosphate ABC transporter, permease subunit compare
PP_4696 -2.2 -5.6 Nitrogen regulation protein NR(I) compare
PP_4936 -2.2 -8.1 O-antigen polymerase compare
PP_1097 -2.2 -1.4 Methionine--tRNA ligase compare
PP_1309 -2.2 -4.8 conserved exported protein of unknown function compare
PP_4264 -2.2 -7.1 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1663 -2.2 -6.7 conserved exported protein of unknown function compare
PP_0293 -2.2 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0191 -2.2 -3.7 Transcriptional regulatory protein AlgQ compare
PP_5329 -2.1 -4.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4814 -2.1 -2.6 ATP-dependent protease La domain protein compare
PP_4892 -2.1 -7.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5145 -2.1 -14.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5094 -2.1 -4.9 putative enzyme with PLP binding domain compare
PP_1262 -2.1 -9.4 LysR family transcriptional regulator conserved
PP_4881 -2.1 -9.6 putative Iron ABC transporter, periplasmic iron-binding protein conserved
PP_4122 -2.1 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0909 -2.1 -7.7 conserved exported protein of unknown function compare
PP_1780 -2.1 -14.4 putative mannosyltransferase compare
PP_0261 -2.1 -5.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4836 -2.1 -3.3 conserved exported protein of unknown function compare
PP_1843 -2.0 -4.8 Mg2+/Co2+ transporter compare
PP_2378 -2.0 -2.9 Fe/S biogenesis protein NfuA compare
PP_5025 -2.0 -6.8 Glucans biosynthesis glucosyltransferase H compare
PP_0995 -2.0 -4.5 conserved membrane protein of unknown function compare
PP_0482 -2.0 -5.8 bacterioferritin compare
PP_3840 -2.0 -1.6 conserved protein of unknown function compare
PP_4340 -2.0 -3.7 response regulator for chemotactic signal transduction compare
PP_1764 -2.0 -3.1 Phosphoglycolate phosphatase 2 compare
PP_2433 -2.0 -1.8 conserved protein of unknown function compare
PP_4592 -2.0 -12.5 putative metal dependent hydrolase compare
PP_5095 -2.0 -1.6 pyrroline-5-carboxylate reductase compare
PP_4980 -1.9 -7.4 ATP-dependent RNA helicase compare
PP_5110 -1.9 -2.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5699 -1.9 -4.8 putative iron uptake protein compare
PP_4938 -1.9 -6.3 putative Glycosyl transferase compare
PP_5045 -1.9 -3.4 tRNA sulfurtransferase compare
PP_4379 -1.9 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4481 -1.8 -6.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2336 -1.8 -4.4 aconitate hydratase 1 compare
PP_4999 -1.8 -0.9 dihydroorotase-like protein compare
PP_0154 -1.8 -11.8 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) compare
PP_2323 -1.8 -4.0 conserved protein of unknown function compare
PP_5092 -1.8 -6.5 putative exported NLP/P60 protein conserved
PP_1871 -1.8 -5.1 Protease HtpX compare
PP_2324 -1.7 -3.8 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1790 -1.7 -3.4 putative Acylneuraminate cytidylyltransferase compare
PP_5155 -1.7 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2148 -1.7 -8.1 transcription-repair coupling factor compare
PP_2098 -1.7 -5.4 D-alanyl-D-alanine carboxypeptidase compare
PP_0630 -1.7 -1.2 DNA gyrase inhibitor YacG compare
PP_1353 -1.7 -2.4 conserved membrane protein of unknown function compare
PP_4131 -1.7 -5.2 NADH-quinone oxidoreductase subunit N compare
PP_0789 -1.7 -4.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0118 -1.7 -5.4 zinc import ATP-binding protein compare
PP_1589 -1.7 -7.9 uridylyltransferase compare
PP_5230 -1.7 -3.4 Tyrosine recombinase XerC compare
PP_5114 -1.7 -2.3 putative adenine methyltransferase compare
PP_1198 -1.7 -3.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2005 -1.7 -5.3 conserved exported protein of unknown function compare
PP_5232 -1.6 -1.5 conserved protein of unknown function compare
PP_0435 -1.6 -6.2 Peptidase, M23/M37 family compare
PP_4789 -1.6 -3.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3227 -1.6 -2.9 Transcriptional regulator, LysR family compare
PP_4098 -1.6 -2.5 UvrABC system protein C compare
PP_4561 -1.6 -0.7 stress response protein compare
PP_2144 -1.6 -3.6 Transcriptional regulator, TetR family compare
PP_1232 -1.6 -4.6 conserved exported protein of unknown function compare
PP_1384 -1.6 -6.1 Probable efflux pump outer membrane protein TtgC compare
PP_0951 -1.6 -4.8 Ribosome hibernation promoting factor compare
PP_4008 -1.6 -4.9 ATP-dependent serine protease compare
PP_4338 -1.6 -6.3 Chemotaxis histidine kinase CheA compare
PP_0189 -1.6 -4.2 putative heme biosynthesis protein compare
PP_2449 -1.6 -3.5 conserved protein of unknown function compare
PP_3105 -1.5 -1.7 conserved membrane protein of unknown function compare
PP_2327 -1.5 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare


Specific Phenotypes

For 64 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms