Experiment set36IT081 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most important genes:

  gene name fitness t score description  
PP_2320 -9.0 -6.2 conserved exported protein of unknown function compare
PP_2322 -7.9 -5.4 Major outer membrane lipoprotein compare
PP_0127 -6.7 -7.8 Thiol:disulfide interchange protein compare
PP_0809 -6.3 -9.7 disulfide bond formation protein B compare
PP_0063 -6.3 -4.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4994 -5.8 -7.0 conserved protein of unknown function compare
PP_1898 -5.7 -4.0 MotA/TolQ/ExbB proton channel family protein compare
PP_1237 -5.4 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0691 -5.4 -3.7 Glutamate 5-kinase compare
PP_5706 -5.2 -5.1 Sec translocation complex - SecG subunit compare
PP_3821 -5.2 -14.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0856 -5.2 -6.2 conserved lipoprotein of unknown function compare
PP_1202 -5.1 -20.7 putative enzyme involved in modification of phospholipids conserved
PP_4902 -5.1 -4.9 Oligoribonuclease compare
PP_4937 -5.0 -7.7 toluene tolerance protein compare
PP_5053 -4.8 -9.7 Protein-export protein SecB compare
PP_2402 -4.8 -4.7 putative Sensor histidine kinase compare
PP_4265 -4.7 -3.2 DNA-binding transcriptional dual regulator compare
PP_2370 -4.7 -4.3 conserved protein of unknown function compare
PP_4804 -4.5 -5.3 RlpA-like lipoprotein compare
PP_4342 -4.3 -7.2 flagellar synthesis regulator, putative ATPase compare
PP_4700 -4.2 -5.7 pantothenate synthetase compare
PP_1719 -4.1 -13.7 Tail-specific protease prc compare
PP_1201 -4.1 -7.1 conserved exported protein of unknown function compare
PP_5218 -3.9 -7.6 DedA family protein compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0184 -3.8 -9.5 Argininosuccinate lyase compare
PP_4693 -3.8 -8.2 RNA polymerase-binding transcription factor DksA compare
PP_0345 -3.7 -5.3 putative Heptose kinase WapP compare
PP_3999 -3.7 -10.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4755 -3.6 -19.7 Outer membrane ferrichrome-iron receptor compare
PP_2328 -3.6 -7.9 Phosphoadenosine phosphosulfate reductase compare
PP_1654 -3.4 -4.0 cysteine synthase B compare
PP_0185 -3.4 -9.7 Positive alginate biosynthesis regulatory protein compare
PP_4143 -3.4 -5.3 conserved protein of unknown function compare
PP_1215 -3.4 -4.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1598 -3.4 -4.3 regulatory intramembrane protein RIP zinc protease compare
PP_0704 -3.3 -6.0 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4701 -3.3 -1.4 glucose-6-phosphate isomerase compare
PP_1493 -3.2 -4.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4895 -3.2 -5.3 tRNA dimethylallyltransferase compare
PP_5185 -3.2 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1635 -3.2 -3.5 DNA-binding response regulator compare
PP_1216 -3.1 -4.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0022 -3.1 -1.6 hypothetical protein compare
PP_4058 -3.1 -10.6 1,4-alpha-glucan branching enzyme compare
PP_1088 -3.0 -13.5 Argininosuccinate synthase compare
PP_0117 -3.0 -6.4 Zn(2+) ABC transporter - permease subunit compare
PP_4560 -3.0 -6.1 putative Ribonuclease BN compare
PP_2145 -3.0 -5.2 beta-N-acetylglucosaminidase compare
PP_1083 -3.0 -7.3 (2Fe-2S)-binding protein compare
PP_5331 -3.0 -3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_5026 -2.9 -12.6 Glucans biosynthesis protein G compare
PP_0938 -2.9 -13.7 conserved protein of unknown function compare
PP_0855 -2.9 -4.0 conserved protein of unknown function compare
PP_5322 -2.9 -8.5 putative metal ion transporter compare
PP_0484 -2.8 -5.6 transporter of an unknown substrate compare
PP_4941 -2.8 -8.9 conserved exported protein of unknown function compare
PP_1695 -2.8 -9.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_4505 -2.8 -6.8 Sensor histidine kinase compare
PP_4009 -2.8 -7.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_4004 -2.8 -8.4 DNA translocase FtsK compare
PP_2371 -2.7 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4723 -2.7 -2.7 Carbamoyl-phosphate synthase large chain compare
PP_2336 -2.7 -6.2 aconitate hydratase 1 compare
PP_1079 -2.7 -8.8 Ornithine carbamoyltransferase compare
PP_4008 -2.7 -10.1 ATP-dependent serine protease compare
PP_4824 -2.7 -9.2 Sensor histidine kinase/response regulator compare
PP_2889 -2.7 -4.8 putative Transmembrane regulator PrtR compare
PP_5289 -2.6 -6.6 Acetylglutamate kinase compare
PP_4610 -2.6 -13.1 conserved protein of unknown function containing PepSY-associated TM helix domain conserved
PP_1733 -2.6 -4.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_2449 -2.5 -6.7 conserved protein of unknown function compare
PP_5095 -2.5 -2.3 pyrroline-5-carboxylate reductase compare
PP_1217 -2.5 -8.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4880 -2.5 -11.3 exoribonuclease R compare
PP_1734 -2.5 -6.0 Probable septum site-determining protein MinC compare
PP_4724 -2.5 -2.4 Carbamoyl-phosphate synthase small chain compare
PP_4364 -2.5 -4.2 putative Anti-sigma F factor antagonist compare
PP_1918 -2.5 -11.4 septation protein compare
PP_1001 -2.4 -5.2 arginine deiminase compare
PP_1428 -2.4 -3.1 Sigma factor AlgU negative regulatory protein compare
PP_0949 -2.4 -7.9 putative ATP-binding protein UPF0042 compare
PP_1082 -2.4 -5.4 bacterioferritin compare
PP_1078 -2.4 -9.0 putative ABC transporter, ATP-binding protein compare
PP_2433 -2.4 -4.1 conserved protein of unknown function compare
PP_1460 -2.4 -11.7 putative Membrane protein compare
PP_5025 -2.4 -12.0 Glucans biosynthesis glucosyltransferase H compare
PP_0908 -2.3 -8.1 conserved exported protein of unknown function compare
PP_1002 -2.3 -6.9 arginine/ornithine antiporter compare
PP_0261 -2.3 -8.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1034 -2.2 -11.2 multicopper oxidase compare
PP_5027 -2.2 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0910 -2.2 -6.2 conserved exported protein of unknown function compare
PP_0909 -2.2 -8.4 conserved exported protein of unknown function compare
PP_1663 -2.2 -9.6 conserved exported protein of unknown function compare
PP_1764 -2.2 -4.9 Phosphoglycolate phosphatase 2 compare
PP_4785 -2.2 -4.3 conserved exported protein of unknown function compare
PP_0846 -2.2 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_1802 -2.2 -14.6 glycosyl transferase compare
PP_4892 -2.1 -8.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1309 -2.1 -6.9 conserved exported protein of unknown function compare
PP_1843 -2.1 -5.0 Mg2+/Co2+ transporter compare
PP_4999 -2.1 -1.4 dihydroorotase-like protein compare
PP_4264 -2.1 -8.6 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2168 -2.1 -8.0 Transaldolase compare
PP_0393 -2.1 -3.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2820 -2.1 -2.9 HTH-type transcriptional regulator nfxB compare
PP_0789 -2.1 -5.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2144 -2.1 -5.4 Transcriptional regulator, TetR family compare
PP_1776 -2.1 -14.0 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0852 -2.1 -7.6 Transcriptional regulator, Cro/CI family compare
PP_0188 -2.1 -5.1 putative Uroporphyrin-III C-methyltransferase compare
PP_0434 -2.1 -5.5 Anhydro-N-acetylmuramic acid kinase compare
PP_0293 -2.0 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4609 -2.0 -4.9 conserved membrane protein of unknown function compare
PP_4882 -2.0 -10.1 Iron ABC transporter, permease protein conserved
PP_4917 -2.0 -5.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4120 -2.0 -3.7 NADH-quinone oxidoreductase subunit B compare
PP_1451 -2.0 -5.5 conserved exported protein of unknown function compare
PP_2327 -2.0 -5.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0999 -2.0 -3.3 carbamate kinase compare
PP_5090 -2.0 -2.3 putative cell division protein compare
PP_1238 -1.9 -4.2 putative Lipoprotein compare
PP_0120 -1.9 -6.2 putative zinc ABC transporter compare
PP_1587 -1.9 -9.0 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_5365 -1.9 -11.5 putative fatty acid methyltransferase conserved
PP_4124 -1.9 -5.3 NADH-quinone oxidoreductase subunit G compare
PP_4481 -1.9 -8.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0995 -1.9 -7.0 conserved membrane protein of unknown function compare
PP_0482 -1.9 -7.8 bacterioferritin compare
PP_1208 -1.9 -3.2 conserved protein of unknown function, SlyX family compare
PP_5232 -1.8 -1.9 conserved protein of unknown function compare
PP_2323 -1.8 -4.7 conserved protein of unknown function compare
PP_1589 -1.8 -10.6 uridylyltransferase compare
PP_0913 -1.8 -7.7 conserved exported protein of unknown function compare
PP_0405 -1.8 -9.2 conserved protein of unknown function compare
PP_1355 -1.8 -8.8 Muropeptide permease AmpG compare
PP_1262 -1.8 -10.6 LysR family transcriptional regulator conserved
PP_5146 -1.8 -6.6 RNA pyrophosphohydrolase compare
PP_4897 -1.8 -5.1 N-acetylmuramoyl-L-alanine amidase compare
PP_1801 -1.8 -11.6 Glycosyl transferase WbpY compare
PP_2098 -1.8 -9.1 D-alanyl-D-alanine carboxypeptidase compare
PP_5028 -1.8 -4.1 proline iminopeptidase compare
PP_1632 -1.8 -2.7 conserved protein of unknown function compare
PP_1468 -1.8 -3.3 Tyrosine recombinase XerD compare
PP_2378 -1.8 -2.5 Fe/S biogenesis protein NfuA compare
PP_2148 -1.8 -10.7 transcription-repair coupling factor compare
PP_2348 -1.7 -5.0 Sensor histidine kinase compare
PP_0833 -1.7 -2.9 queuine tRNA-ribosyltransferase compare
PP_0111 -1.7 -6.5 Electron transport protein SCO1/SenC compare
PP_5699 -1.7 -3.4 putative iron uptake protein compare
PP_4592 -1.7 -11.8 putative metal dependent hydrolase compare
PP_1646 -1.7 -5.3 putative Thioredoxin compare
PP_5328 -1.7 -2.3 putative phosphate transport system permease protein compare
PP_0401 -1.7 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_4891 -1.7 -5.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5327 -1.7 -5.1 putative phosphate ABC transporter, permease subunit compare
PP_0914 -1.7 -8.9 GGDEF domain protein compare
PP_1232 -1.7 -6.3 conserved exported protein of unknown function compare
PP_3241 -1.7 -1.5 conserved exported protein of unknown function compare
PP_4836 -1.7 -2.9 conserved exported protein of unknown function compare
PP_1224 -1.7 -5.9 periplasmic subunit of the TolQRA transport system compare
PP_5145 -1.7 -12.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1800 -1.7 -8.1 Oxidoreductase Rmd compare
PP_4881 -1.6 -9.8 putative Iron ABC transporter, periplasmic iron-binding protein conserved
PP_4593 -1.6 -2.1 conserved protein of unknown function compare
PP_5329 -1.6 -3.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0290 -1.6 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1871 -1.6 -5.6 Protease HtpX compare
PP_4942 -1.6 -2.7 conserved protein of unknown function compare
PP_0719 -1.6 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4909 -1.6 -5.6 phosphoserine phosphatase compare
PP_5048 -1.6 -5.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0630 -1.6 -1.5 DNA gyrase inhibitor YacG compare
PP_1005 -1.6 -4.8 Heme oxygenase compare
PP_0082 -1.6 -5.4 tryptophan synthase alpha chain compare
PP_5202 -1.6 -2.5 putative cell division protein compare
PP_5155 -1.6 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1805 -1.6 -11.4 Polysaccharide biosynthesis protein compare
PP_1912 -1.6 -4.1 Phosphate acyltransferase compare
PP_0118 -1.5 -4.6 zinc import ATP-binding protein compare
PP_1000 -1.5 -3.2 ornithine carbamoyltransferase, catabolic compare
PP_4150 -1.5 -3.5 microcin C transporter - ATP binding subunit conserved
PP_4696 -1.5 -3.9 Nitrogen regulation protein NR(I) compare
PP_4936 -1.5 -6.6 O-antigen polymerase compare
PP_0154 -1.5 -11.2 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) compare
PP_4938 -1.5 -6.5 putative Glycosyl transferase compare
PP_0707 -1.5 -5.4 putative membrane protein compare
PP_3300 -1.5 -6.6 Transcriptional regulator, tetR family compare
PP_5350 -1.4 -3.0 Transcriptional regulator, RpiR family compare
PP_4098 -1.4 -2.9 UvrABC system protein C compare
PP_5096 -1.4 -4.5 putative factor involved in shape determination compare
PP_0435 -1.4 -6.2 Peptidase, M23/M37 family compare
PP_0191 -1.4 -2.8 Transcriptional regulatory protein AlgQ compare
PP_5092 -1.4 -6.3 putative exported NLP/P60 protein conserved
PP_3312 -1.4 -1.9 putative Heat shock protein compare
PP_0247 -1.4 -6.1 Osmolarity sensor protein EnvZ compare
PP_2087 -1.4 -1.5 CmpX protein compare
PP_5610 -1.4 -2.2 protein of unknown function compare


Specific Phenotypes

For 55 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms