Experiment set36IT080 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Genes with specific phenotypes:

  gene name fitness t score description  
PP_1202 -4.9 -19.2 putative enzyme involved in modification of phospholipids conserved
PP_1201 -4.7 -7.9 conserved exported protein of unknown function compare
PP_5218 -3.1 -6.7 DedA family protein compare
PP_1460 -3.1 -11.5 putative Membrane protein compare
PP_4609 -2.8 -6.0 conserved membrane protein of unknown function compare
PP_1695 -2.7 -8.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1843 -2.7 -7.6 Mg2+/Co2+ transporter compare
PP_4755 -2.6 -17.1 Outer membrane ferrichrome-iron receptor compare
PP_5026 -2.6 -9.0 Glucans biosynthesis protein G compare
PP_5025 -2.4 -8.2 Glucans biosynthesis glucosyltransferase H compare
PP_4610 -2.4 -12.0 conserved protein of unknown function containing PepSY-associated TM helix domain conserved
PP_0704 -2.4 -6.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2449 -2.3 -5.3 conserved protein of unknown function compare
PP_1918 -2.3 -11.6 septation protein compare
PP_1238 -2.2 -5.7 putative Lipoprotein compare
PP_1871 -2.2 -6.5 Protease HtpX compare
PP_0188 -2.1 -5.7 putative Uroporphyrin-III C-methyltransferase compare
PP_0482 -2.1 -8.1 bacterioferritin compare
PP_0908 -2.1 -9.0 conserved exported protein of unknown function compare
PP_1078 -2.0 -7.3 putative ABC transporter, ATP-binding protein compare
PP_4264 -2.0 -7.5 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_5699 -2.0 -7.7 putative iron uptake protein compare
PP_1034 -1.9 -11.0 multicopper oxidase compare
PP_1083 -1.9 -6.0 (2Fe-2S)-binding protein compare
PP_4882 -1.9 -10.2 Iron ABC transporter, permease protein conserved
PP_1587 -1.8 -5.7 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_0247 -1.7 -7.4 Osmolarity sensor protein EnvZ compare
PP_0154 -1.7 -10.7 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) compare
PP_5092 -1.7 -8.6 putative exported NLP/P60 protein conserved
PP_4592 -1.7 -10.5 putative metal dependent hydrolase compare
PP_0909 -1.7 -6.6 conserved exported protein of unknown function compare
PP_2098 -1.7 -6.0 D-alanyl-D-alanine carboxypeptidase compare
PP_4980 -1.6 -5.5 ATP-dependent RNA helicase compare
PP_0118 -1.6 -5.5 zinc import ATP-binding protein compare
PP_2148 -1.6 -9.6 transcription-repair coupling factor compare
PP_0111 -1.6 -5.4 Electron transport protein SCO1/SenC compare
PP_1832 -1.6 -6.3 putative Oxidase compare
PP_4881 -1.6 -9.1 putative Iron ABC transporter, periplasmic iron-binding protein conserved
PP_3300 -1.5 -6.1 Transcriptional regulator, tetR family compare
PP_1262 -1.5 -7.9 LysR family transcriptional regulator conserved
PP_4478 -1.3 -6.5 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_4805 -1.2 -6.0 membrane-bound lytic murein transglycosylase B compare
PP_0707 -1.2 -6.0 putative membrane protein compare
PP_4838 -1.1 -7.2 Outer membrane copper receptor OprC compare
PP_3794 -1.1 -5.7 periplasmic murein D-alanyl-D-alanine endopeptidase compare
PP_4148 -1.1 -5.7 putative inner membrane ABC transporter permease protein conserved
PP_5365 -1.1 -6.6 putative fatty acid methyltransferase conserved
PP_4570 +1.3 9.3 conserved protein of unknown function compare
PP_4868 +1.4 5.3 Nicotinate phosphoribosyltransferase compare
PP_1427 +1.5 7.9 RNA polymerase sigma E factor compare
PP_0904 +1.7 9.9 InaA protein compare
PP_1058 +1.7 12.9 conserved protein of unknown function compare
PP_1008 +2.2 7.2 RNA polymerase subunit sigma-24 conserved
PP_1006 +2.4 18.8 putative outer membrane heme receptor compare
PP_2900 +2.6 5.2 conserved protein of unknown function compare
PP_1185 +4.1 14.0 Outer membrane protein H1 compare
PP_0351 +5.2 12.0 putative Transmembrane sensor protein compare


Specific phenotypes for supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms