Experiment set36IT080 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most important genes:

  gene name fitness t score description  
PP_2322 -7.5 -5.2 Major outer membrane lipoprotein compare
PP_2320 -7.5 -13.4 conserved exported protein of unknown function compare
PP_0127 -7.0 -6.8 Thiol:disulfide interchange protein compare
PP_4994 -6.4 -4.4 conserved protein of unknown function compare
PP_0063 -6.1 -4.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1635 -6.0 -3.3 DNA-binding response regulator compare
PP_3821 -5.8 -9.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0856 -5.5 -3.8 conserved lipoprotein of unknown function compare
PP_1898 -5.4 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_0691 -5.2 -3.6 Glutamate 5-kinase compare
PP_2402 -5.1 -3.5 putative Sensor histidine kinase compare
PP_4937 -5.0 -6.9 toluene tolerance protein compare
PP_4804 -5.0 -3.4 RlpA-like lipoprotein compare
PP_4342 -5.0 -5.9 flagellar synthesis regulator, putative ATPase compare
PP_4902 -4.9 -5.2 Oligoribonuclease compare
PP_1202 -4.9 -19.2 putative enzyme involved in modification of phospholipids conserved
PP_0809 -4.8 -12.8 disulfide bond formation protein B compare
PP_1201 -4.7 -7.9 conserved exported protein of unknown function compare
PP_4693 -4.5 -9.1 RNA polymerase-binding transcription factor DksA compare
PP_1734 -4.5 -7.9 Probable septum site-determining protein MinC compare
PP_5027 -4.4 -3.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5706 -4.4 -4.7 Sec translocation complex - SecG subunit compare
PP_4004 -4.3 -8.7 DNA translocase FtsK compare
PP_5095 -4.1 -2.2 pyrroline-5-carboxylate reductase compare
PP_2328 -3.9 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_4265 -3.9 -3.8 DNA-binding transcriptional dual regulator compare
PP_1654 -3.8 -2.6 cysteine synthase B compare
PP_4799 -3.7 -2.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3999 -3.6 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4700 -3.6 -5.4 pantothenate synthetase compare
PP_4058 -3.5 -13.0 1,4-alpha-glucan branching enzyme compare
PP_5053 -3.4 -8.9 Protein-export protein SecB compare
PP_5331 -3.3 -3.9 Long-chain acyl-CoA thioester hydrolase compare
PP_1598 -3.3 -5.2 regulatory intramembrane protein RIP zinc protease compare
PP_0405 -3.3 -13.7 conserved protein of unknown function compare
PP_2371 -3.3 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_2433 -3.2 -2.9 conserved protein of unknown function compare
PP_0406 -3.2 -3.8 Nucleotidyltransferase family protein compare
PP_5218 -3.1 -6.7 DedA family protein compare
PP_1460 -3.1 -11.5 putative Membrane protein compare
PP_4941 -3.1 -9.0 conserved exported protein of unknown function compare
PP_2378 -3.1 -4.1 Fe/S biogenesis protein NfuA compare
PP_1131 -3.0 -3.6 outer membrane lipoprotein compare
PP_1719 -3.0 -11.0 Tail-specific protease prc compare
PP_0434 -3.0 -7.0 Anhydro-N-acetylmuramic acid kinase compare
PP_0484 -3.0 -7.5 transporter of an unknown substrate compare
PP_5090 -3.0 -1.7 putative cell division protein compare
PP_1217 -2.9 -6.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1344 -2.9 -2.5 conserved protein of unknown function compare
PP_1001 -2.8 -4.0 arginine deiminase compare
PP_4609 -2.8 -6.0 conserved membrane protein of unknown function compare
PP_4143 -2.8 -3.7 conserved protein of unknown function compare
PP_4785 -2.8 -4.6 conserved exported protein of unknown function compare
PP_0846 -2.8 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_4009 -2.8 -4.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_1695 -2.7 -8.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_5328 -2.7 -3.2 putative phosphate transport system permease protein compare
PP_1802 -2.7 -16.3 glycosyl transferase compare
PP_4895 -2.7 -5.1 tRNA dimethylallyltransferase compare
PP_4008 -2.7 -7.6 ATP-dependent serine protease compare
PP_4560 -2.7 -7.7 putative Ribonuclease BN compare
PP_1843 -2.7 -7.6 Mg2+/Co2+ transporter compare
PP_0184 -2.6 -9.3 Argininosuccinate lyase compare
PP_4824 -2.6 -9.7 Sensor histidine kinase/response regulator compare
PP_1216 -2.6 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5329 -2.6 -4.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4755 -2.6 -17.1 Outer membrane ferrichrome-iron receptor compare
PP_1428 -2.6 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_5185 -2.6 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5026 -2.6 -9.0 Glucans biosynthesis protein G compare
PP_2348 -2.5 -7.2 Sensor histidine kinase compare
PP_1215 -2.5 -3.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0910 -2.5 -7.6 conserved exported protein of unknown function compare
PP_2087 -2.5 -4.8 CmpX protein compare
PP_2889 -2.5 -7.6 putative Transmembrane regulator PrtR compare
PP_0938 -2.5 -11.5 conserved protein of unknown function compare
PP_0185 -2.5 -8.4 Positive alginate biosynthesis regulatory protein compare
PP_5327 -2.5 -5.7 putative phosphate ABC transporter, permease subunit compare
PP_4723 -2.5 -3.3 Carbamoyl-phosphate synthase large chain compare
PP_1088 -2.4 -13.6 Argininosuccinate synthase compare
PP_0393 -2.4 -3.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0345 -2.4 -3.9 putative Heptose kinase WapP compare
PP_4724 -2.4 -2.3 Carbamoyl-phosphate synthase small chain compare
PP_5025 -2.4 -8.2 Glucans biosynthesis glucosyltransferase H compare
PP_4942 -2.4 -2.7 conserved protein of unknown function compare
PP_2336 -2.4 -5.7 aconitate hydratase 1 compare
PP_2370 -2.4 -2.9 conserved protein of unknown function compare
PP_4936 -2.4 -10.0 O-antigen polymerase compare
PP_4610 -2.4 -12.0 conserved protein of unknown function containing PepSY-associated TM helix domain conserved
PP_5322 -2.4 -9.1 putative metal ion transporter compare
PP_0704 -2.4 -6.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1079 -2.4 -4.9 Ornithine carbamoyltransferase compare
PP_2327 -2.3 -5.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1733 -2.3 -4.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5289 -2.3 -4.9 Acetylglutamate kinase compare
PP_2449 -2.3 -5.3 conserved protein of unknown function compare
PP_1451 -2.3 -3.1 conserved exported protein of unknown function compare
PP_1355 -2.3 -9.7 Muropeptide permease AmpG compare
PP_1918 -2.3 -11.6 septation protein compare
PP_0949 -2.2 -5.1 putative ATP-binding protein UPF0042 compare
PP_1082 -2.2 -3.9 bacterioferritin compare
PP_1238 -2.2 -5.7 putative Lipoprotein compare
PP_0957 -2.2 -2.0 D-arabinose 5-phosphate isomerase compare
PP_1871 -2.2 -6.5 Protease HtpX compare
PP_0855 -2.2 -2.4 conserved protein of unknown function compare
PP_4505 -2.2 -5.0 Sensor histidine kinase compare
PP_4593 -2.2 -1.8 conserved protein of unknown function compare
PP_1780 -2.1 -15.7 putative mannosyltransferase compare
PP_1800 -2.1 -9.7 Oxidoreductase Rmd compare
PP_0117 -2.1 -5.1 Zn(2+) ABC transporter - permease subunit compare
PP_2144 -2.1 -3.3 Transcriptional regulator, TetR family compare
PP_0188 -2.1 -5.7 putative Uroporphyrin-III C-methyltransferase compare
PP_0482 -2.1 -8.1 bacterioferritin compare
PP_0908 -2.1 -9.0 conserved exported protein of unknown function compare
PP_1224 -2.0 -5.1 periplasmic subunit of the TolQRA transport system compare
PP_1799 -2.0 -11.8 GDP-mannose 4,6-dehydratase compare
PP_1078 -2.0 -7.3 putative ABC transporter, ATP-binding protein compare
PP_4891 -2.0 -5.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4264 -2.0 -7.5 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0120 -2.0 -5.9 putative zinc ABC transporter compare
PP_1663 -2.0 -8.4 conserved exported protein of unknown function compare
PP_5055 -2.0 -3.5 Sulfurtransferase compare
PP_5699 -2.0 -7.7 putative iron uptake protein compare
PP_4836 -2.0 -3.9 conserved exported protein of unknown function compare
PP_4880 -2.0 -8.5 exoribonuclease R compare
PP_1779 -2.0 -7.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1034 -1.9 -11.0 multicopper oxidase compare
PP_1804 -1.9 -8.2 Glycosyl transferase WbpL compare
PP_4910 -1.9 -2.7 conserved protein of unknown function compare
PP_1309 -1.9 -5.9 conserved exported protein of unknown function compare
PP_1083 -1.9 -6.0 (2Fe-2S)-binding protein compare
PP_4098 -1.9 -2.9 UvrABC system protein C compare
PP_4892 -1.9 -5.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1237 -1.9 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5310 -1.9 -5.6 junction-specific ATP-dependent DNA helicase compare
PP_4882 -1.9 -10.2 Iron ABC transporter, permease protein conserved
PP_4938 -1.9 -8.9 putative Glycosyl transferase compare
PP_1646 -1.9 -3.7 putative Thioredoxin compare
PP_1776 -1.9 -11.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1764 -1.9 -3.6 Phosphoglycolate phosphatase 2 compare
PP_1805 -1.8 -13.5 Polysaccharide biosynthesis protein compare
PP_1055 -1.8 -1.5 Type II secretion pathway protein GspN compare
PP_0261 -1.8 -6.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0999 -1.8 -3.3 carbamate kinase compare
PP_1587 -1.8 -5.7 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_4129 -1.8 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2324 -1.8 -3.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5748 -1.8 -1.3 cytochrome c heme lyase subunit compare
PP_1801 -1.7 -8.3 Glycosyl transferase WbpY compare
PP_5145 -1.7 -11.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0247 -1.7 -7.4 Osmolarity sensor protein EnvZ compare
PP_0154 -1.7 -10.7 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) compare
PP_5092 -1.7 -8.6 putative exported NLP/P60 protein conserved
PP_4592 -1.7 -10.5 putative metal dependent hydrolase compare
PP_0913 -1.7 -5.4 conserved exported protein of unknown function compare
PP_1002 -1.7 -4.4 arginine/ornithine antiporter compare
PP_4917 -1.7 -4.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5604 -1.7 -2.0 putative subtilisin-like serine protease compare
PP_4943 -1.7 -2.4 putative Glycosyl transferase compare
PP_0909 -1.7 -6.6 conserved exported protein of unknown function compare
PP_1778 -1.7 -7.9 Lipopolysaccharide ABC export system, permease protein compare
PP_2098 -1.7 -6.0 D-alanyl-D-alanine carboxypeptidase compare
PP_5146 -1.7 -6.6 RNA pyrophosphohydrolase compare
PP_4980 -1.6 -5.5 ATP-dependent RNA helicase compare
PP_1664 -1.6 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_2337 -1.6 -2.7 aconitate isomerase compare
PP_2323 -1.6 -4.4 conserved protein of unknown function compare
PP_4320 -1.6 -3.1 cytochrome c-type biogenesis protein compare
PP_0118 -1.6 -5.5 zinc import ATP-binding protein compare
PP_1232 -1.6 -4.7 conserved exported protein of unknown function compare
PP_0901 -1.6 -4.7 DNA-binding response regulator compare
PP_2148 -1.6 -9.6 transcription-repair coupling factor compare
PP_0111 -1.6 -5.4 Electron transport protein SCO1/SenC compare
PP_0951 -1.6 -5.6 Ribosome hibernation promoting factor compare
PP_4897 -1.6 -3.8 N-acetylmuramoyl-L-alanine amidase compare
PP_1832 -1.6 -6.3 putative Oxidase compare
PP_4881 -1.6 -9.1 putative Iron ABC transporter, periplasmic iron-binding protein conserved
PP_4874 -1.6 -1.4 50S ribosomal protein L9 compare
PP_5546 -1.6 -2.2 conserved protein of unknown function compare
PP_1208 -1.5 -1.8 conserved protein of unknown function, SlyX family compare
PP_5652 -1.5 -3.2 conserved protein of unknown function, phage origin compare
PP_3300 -1.5 -6.1 Transcriptional regulator, tetR family compare
PP_0435 -1.5 -6.2 Peptidase, M23/M37 family compare
PP_1783 -1.5 -1.8 dTDP-glucose pyrophosphorylase compare
PP_5350 -1.5 -4.0 Transcriptional regulator, RpiR family compare
PP_5217 -1.5 -9.1 Polyphosphate kinase compare
PP_0852 -1.5 -3.3 Transcriptional regulator, Cro/CI family compare
PP_1262 -1.5 -7.9 LysR family transcriptional regulator conserved
PP_1000 -1.5 -2.8 ornithine carbamoyltransferase, catabolic compare
PP_2820 -1.5 -2.8 HTH-type transcriptional regulator nfxB compare
PP_4481 -1.5 -5.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3551 -1.5 -1.4 DNA-binding response regulator, LuxR family compare
PP_5094 -1.4 -4.0 putative enzyme with PLP binding domain compare
PP_2090 -1.4 -2.9 Uroporphyrinogen-III C-methyltransferase compare
PP_5114 -1.4 -1.8 putative adenine methyltransferase compare
PP_1142 -1.4 -1.2 conserved protein of unknown function compare
PP_2168 -1.4 -4.7 Transaldolase compare
PP_0995 -1.4 -4.2 conserved membrane protein of unknown function compare
PP_5028 -1.4 -4.4 proline iminopeptidase compare
PP_0189 -1.4 -4.3 putative heme biosynthesis protein compare


Specific Phenotypes

For 57 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms