Experiment set36IT079 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.4 -3.8 Glutamate 5-kinase compare
PP_5328 -4.4 -3.0 putative phosphate transport system permease protein compare
PP_0856 -4.3 -7.7 conserved lipoprotein of unknown function compare
PP_4700 -4.2 -5.7 pantothenate synthetase compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_4265 -4.0 -4.7 DNA-binding transcriptional dual regulator compare
PP_4799 -3.9 -2.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0846 -3.6 -2.5 DnaK-like molecular chaperone specific for IscU compare
PP_2402 -3.6 -4.2 putative Sensor histidine kinase compare
PP_3999 -3.2 -9.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0833 -3.0 -4.0 queuine tRNA-ribosyltransferase compare
PP_4723 -2.8 -2.0 Carbamoyl-phosphate synthase large chain compare
PP_0393 -2.7 -4.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0999 -2.6 -7.0 carbamate kinase compare
PP_1237 -2.5 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0719 -2.4 -2.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4560 -2.4 -6.5 putative Ribonuclease BN compare
PP_1664 -2.4 -5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_2328 -2.3 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_1353 -2.3 -5.1 conserved membrane protein of unknown function compare
PP_4342 -2.2 -4.0 flagellar synthesis regulator, putative ATPase compare
PP_1001 -2.2 -5.2 arginine deiminase compare
PP_2371 -2.2 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4004 -2.1 -8.4 DNA translocase FtsK compare
PP_4880 -2.1 -11.1 exoribonuclease R compare
PP_4693 -2.1 -6.0 RNA polymerase-binding transcription factor DksA compare
PP_5329 -2.1 -5.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1783 -1.8 -2.9 dTDP-glucose pyrophosphorylase compare
PP_4755 -1.8 -13.9 Outer membrane ferrichrome-iron receptor compare
PP_4895 -1.8 -4.0 tRNA dimethylallyltransferase compare
PP_1734 -1.8 -7.8 Probable septum site-determining protein MinC compare
PP_5327 -1.8 -4.8 putative phosphate ABC transporter, permease subunit compare
PP_0888 -1.8 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1598 -1.8 -5.0 regulatory intramembrane protein RIP zinc protease compare
PP_2370 -1.7 -2.4 conserved protein of unknown function compare
PP_0293 -1.7 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1000 -1.7 -6.2 ornithine carbamoyltransferase, catabolic compare
PP_5706 -1.7 -2.0 Sec translocation complex - SecG subunit compare
PP_4902 -1.7 -4.5 Oligoribonuclease compare
PP_5216 -1.6 -2.7 exopolyphosphatase compare
PP_4964 -1.6 -4.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0704 -1.6 -6.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4214 -1.5 -4.5 pyoverdine biosynthesis related protein compare
PP_3840 -1.5 -2.3 conserved protein of unknown function compare
PP_1216 -1.5 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1002 -1.5 -5.9 arginine/ornithine antiporter compare
PP_1468 -1.5 -4.2 Tyrosine recombinase XerD compare
PP_5048 -1.5 -6.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1214 -1.5 -2.8 putative transcriptional regulatory protein compare
PP_2107 -1.5 -2.7 conserved protein of unknown function compare
PP_5028 -1.5 -4.9 proline iminopeptidase compare
PP_5393 -1.4 -1.8 putative metal-binding chaperone compare
PP_0998 -1.4 -5.9 conserved protein of unknown function compare
PP_4999 -1.4 -1.2 dihydroorotase-like protein compare
PP_0566 -1.4 -1.5 translation-related factor compare
PP_4340 -1.3 -4.5 response regulator for chemotactic signal transduction compare
PP_1428 -1.3 -2.7 Sigma factor AlgU negative regulatory protein compare
PP_4724 -1.3 -2.3 Carbamoyl-phosphate synthase small chain compare
PP_1215 -1.3 -3.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1719 -1.2 -6.9 Tail-specific protease prc compare
PP_4131 -1.2 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_4909 -1.2 -5.0 phosphoserine phosphatase compare
PP_3241 -1.2 -1.6 conserved exported protein of unknown function compare
PP_5095 -1.2 -1.5 pyrroline-5-carboxylate reductase compare
PP_0292 -1.2 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1022 -1.2 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_4993 -1.2 -3.7 Glutathione synthetase compare
PP_4874 -1.2 -1.9 50S ribosomal protein L9 compare
PP_4610 -1.1 -7.0 conserved protein of unknown function containing PepSY-associated TM helix domain conserved
PP_2378 -1.1 -1.7 Fe/S biogenesis protein NfuA compare
PP_4215 -1.1 -3.1 pyoverdine biosynthesis related protein compare
PP_1186 -1.1 -2.4 two component system DNA-binding transcriptional dual regulator compare
PP_2615 -1.1 -2.9 hemolysin-coregulated protein compare
PP_4122 -1.1 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1142 -1.1 -1.5 conserved protein of unknown function compare
PP_5652 -1.1 -2.0 conserved protein of unknown function, phage origin compare
PP_0630 -1.1 -1.4 DNA gyrase inhibitor YacG compare
PP_4917 -1.1 -3.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4120 -1.1 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_1986 -1.1 -2.5 3-isopropylmalate dehydratase small subunit compare
PP_1733 -1.0 -3.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_1994 -1.0 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_4726 -1.0 -2.3 Chaperone protein DnaJ compare
PP_0164 -1.0 -4.1 conserved protein of unknown function compare
PP_4792 -1.0 -3.1 conserved exported protein of unknown function compare
PP_4546 -1.0 -2.9 ATP-dependent helicase HrpA compare
PP_5027 -1.0 -2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1589 -1.0 -5.6 uridylyltransferase compare
PP_1187 -1.0 -5.9 sensor protein compare
PP_4892 -1.0 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_t11 -1.0 -3.0 tRNA-Lys compare
PP_2217 -1.0 -2.2 enoyl-CoA hydratase compare
PP_5025 -1.0 -6.3 Glucans biosynthesis glucosyltransferase H compare
PP_2291 -1.0 -2.2 conserved protein of unknown function compare
PP_1935 -1.0 -3.5 Transcriptional regulator, Cro/CI family compare
PP_4988 -1.0 -4.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4824 -1.0 -4.7 Sensor histidine kinase/response regulator compare
PP_4008 -0.9 -4.9 ATP-dependent serine protease compare
PP_1912 -0.9 -3.4 Phosphate acyltransferase compare
PP_2847 -0.9 -2.2 Urease accessory protein UreJ compare
PP_1439 -0.9 -1.3 conserved exported protein of unknown function compare
PP_2341 -0.9 -2.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1076 -0.9 -3.6 aquaglyceroporin compare
PP_5232 -0.9 -1.3 conserved protein of unknown function compare
PP_4697 -0.9 -2.1 poly(A) polymerase compare
PP_2510 -0.9 -1.9 conserved protein of unknown function compare
PP_4994 -0.9 -3.2 conserved protein of unknown function compare
PP_0290 -0.9 -3.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5058 -0.9 -3.1 Carboxy-terminal-processing protease compare
PP_5139 -0.9 -4.5 cadmium translocating P-type ATPase compare
PP_1268 -0.9 -2.4 putative HtrA suppressor protein sohA compare
PP_5155 -0.9 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1208 -0.9 -2.2 conserved protein of unknown function, SlyX family compare
PP_1217 -0.9 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3555 -0.9 -4.0 putative Transmembrane sensor compare
PP_2337 -0.8 -1.7 aconitate isomerase compare
PP_2132 -0.8 -3.5 Universal stress protein compare
PP_2214 -0.8 -3.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4273 -0.8 -1.4 Transcriptional regulator, MerR family compare
PP_4787 -0.8 -3.1 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2336 -0.8 -2.5 aconitate hydratase 1 compare
PP_2976 -0.8 -1.8 putative transposase compare
PP_1309 -0.8 -5.4 conserved exported protein of unknown function compare
PP_0673 -0.8 -2.3 conserved protein of unknown function compare
PP_0185 -0.8 -4.6 Positive alginate biosynthesis regulatory protein compare
PP_0938 -0.8 -5.5 conserved protein of unknown function compare
PP_1185 -0.8 -4.2 Outer membrane protein H1 compare
PP_4364 -0.8 -2.9 putative Anti-sigma F factor antagonist compare
PP_4961 -0.8 -1.9 putative Lipoprotein compare
PP_0440 -0.8 -2.0 Elongation factor Tu-A compare
PP_0291 -0.8 -2.4 conserved protein of unknown function compare
PP_1079 -0.8 -2.8 Ornithine carbamoyltransferase compare
PP_1198 -0.8 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0643 -0.8 -1.2 protein of unknown function compare
PP_0401 -0.8 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4989 -0.8 -2.0 Protein PilJ compare
PP_2327 -0.8 -3.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4804 -0.8 -2.3 RlpA-like lipoprotein compare
PP_5537 -0.8 -3.0 conserved membrane protein of unknown function compare
PP_4997 -0.8 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1731 -0.8 -3.3 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0725 -0.8 -3.3 conserved hypothetical TPR repeat protein compare
PP_4338 -0.7 -4.7 Chemotaxis histidine kinase CheA compare
PP_0119 -0.7 -2.0 putative zinc uptake regulation protein ZUR compare
PP_2456 -0.7 -3.5 D-ribose ABC transporter - permease subunit compare
PP_4362 -0.7 -2.4 conserved protein of unknown function compare
PP_0258 -0.7 -2.3 regulator of murein cross-linking compare
PP_2720 -0.7 -1.2 conserved protein of unknown function compare
PP_5185 -0.7 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4875 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_0913 -0.7 -4.1 conserved exported protein of unknown function compare
PP_1088 -0.7 -4.7 Argininosuccinate synthase compare
PP_2145 -0.7 -2.9 beta-N-acetylglucosaminidase compare
PP_4706 -0.7 -2.7 conserved protein of unknown function compare
PP_1034 -0.7 -4.6 multicopper oxidase compare
PP_4058 -0.7 -5.0 1,4-alpha-glucan branching enzyme compare
PP_2883 -0.7 -1.5 conserved protein of unknown function compare
PP_0908 -0.7 -4.4 conserved exported protein of unknown function compare
PP_1303 -0.7 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_2932 -0.7 -3.5 Amidase family protein compare
PP_1632 -0.7 -1.6 conserved protein of unknown function compare
PP_0184 -0.7 -3.8 Argininosuccinate lyase compare
PP_2087 -0.7 -2.1 CmpX protein compare
PP_2824 -0.7 -1.8 Transcriptional regulator, TetR family compare
PP_0711 -0.7 -1.4 putative hydrolase compare
PP_5448 -0.7 -1.6 conserved protein of unknown function compare
PP_3357 -0.7 -3.1 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_0339 -0.7 -2.1 Pyruvate dehydrogenase E1 component compare
PP_1304 -0.7 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2152 -0.7 -1.8 glycerophosphoryl diester phosphodiesterase compare
PP_4159 -0.7 -1.4 Potassium-transporting ATPase C chain compare
PP_5583 -0.7 -1.6 conserved protein of unknown function compare
PP_4286 -0.7 -3.3 allantoinase compare
PP_1738 -0.7 -3.7 conserved exported protein of unknown function compare
PP_5688 -0.7 -3.5 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_2442 -0.7 -1.2 conserved protein of unknown function, DUF480 family compare
PP_1255 -0.7 -2.7 putative cis-4-hydroxy-D-proline oxidase compare
PP_5423 -0.7 -1.5 conserved membrane protein of unknown function compare
PP_5084 -0.7 -4.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1083 -0.7 -1.6 (2Fe-2S)-binding protein compare
PP_0568 -0.7 -3.2 conserved protein of unknown function compare
PP_4098 -0.6 -1.7 UvrABC system protein C compare
PP_5289 -0.6 -2.5 Acetylglutamate kinase compare
PP_0003 -0.6 -2.8 16S RNA methyltransferase compare
PP_5248 -0.6 -0.9 putative hydrolase compare
PP_4684 -0.6 -3.7 conserved protein of unknown function with kinase-like domain compare
PP_5176 -0.6 -2.0 conserved protein of unknown function compare
PP_1417 -0.6 -2.2 putative Tricarboxylate transport protein TctB compare
PP_4213 -0.6 -1.5 putative dipeptidase compare
PP_4056 -0.6 -3.4 putative phosphohydrolase of unknown function compare
PP_0832 -0.6 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0236 -0.6 -1.8 NAD(P)H-dependent FMN reductase subunit compare
PP_1906 -0.6 -1.9 ribosomal large subunit pseudouridine synthase C compare
PP_0120 -0.6 -2.3 putative zinc ABC transporter compare
PP_4696 -0.6 -2.7 Nitrogen regulation protein NR(I) compare
PP_0117 -0.6 -3.0 Zn(2+) ABC transporter - permease subunit compare
PP_5026 -0.6 -3.4 Glucans biosynthesis protein G compare
PP_4392 -0.6 -3.5 chemotaxis protein methyltransferase compare
PP_3055 -0.6 -2.1 Pyocin R2_PP, tail formation protein compare
PP_4009 -0.6 -3.1 ATP-dependent Clp protease adapter protein ClpS compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms