Experiment set36IT077 for Pseudomonas putida KT2440

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.3 -3.7 Glutamate 5-kinase compare
PP_1237 -5.3 -3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4700 -4.9 -3.4 pantothenate synthetase compare
PP_0856 -4.3 -8.2 conserved lipoprotein of unknown function compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0846 -3.4 -2.4 DnaK-like molecular chaperone specific for IscU compare
PP_4265 -3.1 -3.9 DNA-binding transcriptional dual regulator compare
PP_4560 -2.9 -6.8 putative Ribonuclease BN compare
PP_4724 -2.9 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_5328 -2.8 -3.3 putative phosphate transport system permease protein compare
PP_0393 -2.7 -4.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0833 -2.6 -3.9 queuine tRNA-ribosyltransferase compare
PP_4895 -2.6 -5.4 tRNA dimethylallyltransferase compare
PP_1002 -2.6 -7.1 arginine/ornithine antiporter compare
PP_5327 -2.6 -6.3 putative phosphate ABC transporter, permease subunit compare
PP_1001 -2.5 -5.4 arginine deiminase compare
PP_3999 -2.5 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1000 -2.4 -7.5 ornithine carbamoyltransferase, catabolic compare
PP_2371 -2.4 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0999 -2.3 -4.6 carbamate kinase compare
PP_2370 -2.3 -3.4 conserved protein of unknown function compare
PP_4723 -2.2 -4.0 Carbamoyl-phosphate synthase large chain compare
PP_4804 -2.2 -5.3 RlpA-like lipoprotein compare
PP_1568 -2.2 -2.2 conserved protein of unknown function compare
PP_4213 -2.1 -3.5 putative dipeptidase compare
PP_4693 -2.1 -6.3 RNA polymerase-binding transcription factor DksA compare
PP_4999 -2.1 -1.4 dihydroorotase-like protein compare
PP_4880 -2.0 -11.2 exoribonuclease R compare
PP_4004 -2.0 -8.5 DNA translocase FtsK compare
PP_2402 -2.0 -3.2 putative Sensor histidine kinase compare
PP_1428 -1.9 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_1664 -1.8 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_5508 -1.8 -1.9 conserved protein of unknown function compare
PP_1353 -1.8 -4.5 conserved membrane protein of unknown function compare
PP_5329 -1.8 -4.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4755 -1.7 -12.8 Outer membrane ferrichrome-iron receptor compare
PP_0998 -1.7 -6.9 conserved protein of unknown function compare
PP_1215 -1.6 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5706 -1.6 -1.9 Sec translocation complex - SecG subunit compare
PP_1764 -1.6 -3.9 Phosphoglycolate phosphatase 2 compare
PP_1734 -1.6 -6.0 Probable septum site-determining protein MinC compare
PP_4342 -1.6 -4.1 flagellar synthesis regulator, putative ATPase compare
PP_2336 -1.6 -4.8 aconitate hydratase 1 compare
PP_0704 -1.5 -5.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1589 -1.5 -8.5 uridylyltransferase compare
PP_1994 -1.5 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4917 -1.4 -4.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1216 -1.4 -5.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4902 -1.4 -3.2 Oligoribonuclease compare
PP_0513 -1.4 -2.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2328 -1.3 -3.8 Phosphoadenosine phosphosulfate reductase compare
PP_4214 -1.3 -3.4 pyoverdine biosynthesis related protein compare
PP_4546 -1.3 -4.3 ATP-dependent helicase HrpA compare
PP_1598 -1.3 -3.7 regulatory intramembrane protein RIP zinc protease compare
PP_4993 -1.3 -5.6 Glutathione synthetase compare
PP_4964 -1.3 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0832 -1.2 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5058 -1.2 -4.1 Carboxy-terminal-processing protease compare
PP_1208 -1.2 -3.3 conserved protein of unknown function, SlyX family compare
PP_4824 -1.2 -5.0 Sensor histidine kinase/response regulator compare
PP_5048 -1.1 -4.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1553 -1.1 -1.6 conserved protein of unknown function compare
PP_1935 -1.1 -2.4 Transcriptional regulator, Cro/CI family compare
PP_1999 -1.1 -2.4 membrane protein required for colicin V production compare
PP_4610 -1.1 -6.7 conserved protein of unknown function containing PepSY-associated TM helix domain conserved
PP_1719 -1.0 -5.1 Tail-specific protease prc compare
PP_0794 -1.0 -2.6 1-phosphofructokinase monomer compare
PP_4419 -1.0 -3.0 transposase compare
PP_1217 -1.0 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2793 -1.0 -2.1 Acyl-CoA dehydrogenase family protein compare
PP_4482 -1.0 -3.7 Transcriptional regulator, AraC family compare
PP_0164 -1.0 -3.3 conserved protein of unknown function compare
PP_1468 -1.0 -2.9 Tyrosine recombinase XerD compare
PP_4215 -1.0 -3.0 pyoverdine biosynthesis related protein compare
PP_2718 -1.0 -2.3 arsenic resistance transcriptional regulator compare
PP_2932 -1.0 -4.8 Amidase family protein compare
PP_4009 -1.0 -3.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_1187 -1.0 -5.2 sensor protein compare
PP_4988 -1.0 -3.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4697 -0.9 -2.6 poly(A) polymerase compare
PP_2378 -0.9 -1.9 Fe/S biogenesis protein NfuA compare
PP_4989 -0.9 -2.6 Protein PilJ compare
PP_4392 -0.9 -4.1 chemotaxis protein methyltransferase compare
PP_1912 -0.9 -2.8 Phosphate acyltransferase compare
PP_1783 -0.9 -1.6 dTDP-glucose pyrophosphorylase compare
PP_1211 -0.9 -3.6 conserved protein of unknown function compare
PP_4340 -0.9 -3.4 response regulator for chemotactic signal transduction compare
PP_5095 -0.9 -1.0 pyrroline-5-carboxylate reductase compare
PP_4332 -0.9 -2.6 Chemotaxis protein CheW compare
PP_3555 -0.9 -4.0 putative Transmembrane sensor compare
PP_0120 -0.9 -3.2 putative zinc ABC transporter compare
PP_4120 -0.9 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_0040 -0.9 -2.5 hypothetical protein compare
PP_1186 -0.9 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_0566 -0.9 -1.0 translation-related factor compare
PP_5232 -0.8 -1.8 conserved protein of unknown function compare
PP_2247 -0.8 -1.9 putative Endoribonuclease compare
PP_1022 -0.8 -3.4 glucose 6-phosphate-1-dehydrogenase compare
PP_1826 -0.8 -2.2 Hydrolase, isochorismatase family compare
PP_1083 -0.8 -2.5 (2Fe-2S)-binding protein compare
PP_5201 -0.8 -0.8 conserved protein of unknown function, UPF0149 family compare
PP_1344 -0.8 -0.9 conserved protein of unknown function compare
PP_2087 -0.8 -2.2 CmpX protein compare
PP_0003 -0.8 -2.5 16S RNA methyltransferase compare
PP_1207 -0.8 -2.9 conserved protein of unknown function compare
PP_5008 -0.8 -1.0 Poly granule-associated protein compare
PP_1362 -0.8 -3.3 pyruvate kinase II compare
PP_0117 -0.8 -2.8 Zn(2+) ABC transporter - permease subunit compare
PP_3094 -0.8 -2.7 conserved exported protein of unknown function compare
PP_4980 -0.8 -3.7 ATP-dependent RNA helicase compare
PP_5026 -0.8 -4.7 Glucans biosynthesis protein G compare
PP_3286 -0.8 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1729 -0.8 -1.4 conserved protein of unknown function compare
PP_2327 -0.8 -3.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1366 -0.8 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_4008 -0.8 -3.6 ATP-dependent serine protease compare
PP_4696 -0.8 -2.7 Nitrogen regulation protein NR(I) compare
PP_4792 -0.8 -1.9 conserved exported protein of unknown function compare
PP_2475 -0.8 -3.2 Transcriptional regulator, TetR family compare
PP_2029 -0.8 -2.1 von Willebrand factor type A domain protein compare
PP_0685 -0.8 -1.8 conserved protein of unknown function compare
PP_1214 -0.8 -2.9 putative transcriptional regulatory protein compare
PP_4787 -0.8 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2999 -0.7 -1.2 Glyoxalase family protein compare
PP_0292 -0.7 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0185 -0.7 -4.5 Positive alginate biosynthesis regulatory protein compare
PP_0719 -0.7 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5176 -0.7 -1.7 conserved protein of unknown function compare
PP_2684 -0.7 -2.3 conserved membrane protein of unknown function compare
PP_4593 -0.7 -0.9 conserved protein of unknown function compare
PP_1381 -0.7 -1.0 4-carboxymuconolactone decarboxylase compare
PP_5025 -0.7 -4.3 Glucans biosynthesis glucosyltransferase H compare
PP_0959 -0.7 -2.0 phospholipid ABC transporter compare
PP_1034 -0.7 -4.7 multicopper oxidase compare
PP_3880 -0.7 -1.0 conserved exported protein of unknown function compare
PP_4130 -0.7 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4961 -0.7 -1.5 putative Lipoprotein compare
PP_3989 -0.7 -2.5 DNA-cytosine methyltransferase compare
PP_4387 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4891 -0.7 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2227 -0.7 -2.4 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_4892 -0.7 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1733 -0.7 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_3508 -0.7 -2.1 Protein CobW compare
PP_5139 -0.7 -2.8 cadmium translocating P-type ATPase compare
PP_2640 -0.7 -1.7 Acetyltransferase, GNAT family compare
PP_2225 -0.7 -3.0 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_2655 -0.7 -1.9 conserved protein of unknown function compare
PP_4364 -0.7 -2.6 putative Anti-sigma F factor antagonist compare
PP_5456 -0.7 -1.2 conserved protein of unknown function compare
PP_0711 -0.7 -1.8 putative hydrolase compare
PP_0241 -0.7 -1.6 Transporter compare
PP_1232 -0.7 -3.9 conserved exported protein of unknown function compare
PP_1304 -0.7 -3.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2229 -0.7 -1.8 putative K(+)/H(+) antiporter subunit C compare
PP_0913 -0.7 -3.5 conserved exported protein of unknown function compare
PP_1454 -0.7 -2.2 conserved protein of unknown function compare
PP_5350 -0.7 -1.8 Transcriptional regulator, RpiR family compare
PP_1076 -0.7 -3.4 aquaglyceroporin compare
PP_4609 -0.7 -2.9 conserved membrane protein of unknown function compare
PP_0339 -0.7 -2.1 Pyruvate dehydrogenase E1 component compare
PP_5572 -0.7 -2.9 protein of unknown function compare
PP_2088 -0.6 -1.4 RNA polymerase sigma factor SigX compare
PP_4793 -0.6 -1.2 conserved protein of unknown function compare
PP_0242 -0.6 -3.4 Transcriptional regulator, TetR family compare
PP_0978 -0.6 -1.2 conserved protein of unknown function compare
PP_3748 -0.6 -2.7 conserved hypothetical protein compare
PP_5294 -0.6 -3.1 Ribonuclease PH compare
PP_4559 -0.6 -2.5 peptide deformylase compare
PP_1198 -0.6 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5045 -0.6 -2.0 tRNA sulfurtransferase compare
PP_3332 -0.6 -1.1 putative cytochrome c-type protein compare
PP_4690 -0.6 -1.8 Rieske 2Fe-2S family protein compare
PP_4129 -0.6 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4338 -0.6 -3.8 Chemotaxis histidine kinase CheA compare
PP_1554 -0.6 -1.9 conserved protein of unknown function compare
PP_2226 -0.6 -2.4 putative K(+)/H(+) antiporter subunit F compare
PP_1906 -0.6 -1.9 ribosomal large subunit pseudouridine synthase C compare
PP_5621 -0.6 -1.4 protein of unknown function compare
PP_4684 -0.6 -3.2 conserved protein of unknown function with kinase-like domain compare
PP_1193 -0.6 -2.5 conserved membrane protein of unknown function compare
PP_3295 -0.6 -1.5 YeeE/YedE family protein compare
PP_0086 -0.6 -1.7 conserved protein of unknown function compare
PP_4829 -0.6 -2.0 putative precorrin-3B synthase compare
PP_0909 -0.6 -3.7 conserved exported protein of unknown function compare
PP_4909 -0.6 -3.0 phosphoserine phosphatase compare
PP_1632 -0.6 -1.5 conserved protein of unknown function compare
PP_3660 -0.6 -3.0 Transcriptional regulator, LysR family compare
PP_4875 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_5090 -0.6 -1.4 putative cell division protein compare
PP_1185 -0.6 -2.6 Outer membrane protein H1 compare
PP_1309 -0.6 -2.7 conserved exported protein of unknown function compare
PP_5155 -0.6 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3904 -0.6 -1.8 conserved protein of unknown function compare
PP_5084 -0.6 -3.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5248 -0.6 -0.8 putative hydrolase compare
PP_1138 -0.6 -2.3 branched chain amino acid transporter - ATP binding subunit compare
PP_0210 -0.6 -2.6 putative Phycobiliprotein compare
PP_0735 -0.6 -0.8 molybdopterin-synthase adenylyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms