Experiment set36IT076 for Pseudomonas putida KT2440

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
PP_0856 -5.0 -6.9 conserved lipoprotein of unknown function compare
PP_4265 -4.0 -4.7 DNA-binding transcriptional dual regulator compare
PP_1654 -3.9 -3.8 cysteine synthase B compare
PP_4799 -3.9 -2.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0691 -3.8 -5.2 Glutamate 5-kinase compare
PP_4936 -3.7 -14.1 O-antigen polymerase compare
PP_4804 -3.4 -5.9 RlpA-like lipoprotein compare
PP_5095 -3.4 -3.2 pyrroline-5-carboxylate reductase compare
PP_4895 -3.4 -5.1 tRNA dimethylallyltransferase compare
PP_4943 -3.3 -4.3 putative Glycosyl transferase compare
PP_4560 -3.3 -6.6 putative Ribonuclease BN compare
PP_4940 -3.2 -9.9 Putative glycosyltransferase compare
PP_4693 -3.0 -6.4 RNA polymerase-binding transcription factor DksA compare
PP_4700 -2.9 -5.7 pantothenate synthetase compare
PP_1237 -2.8 -3.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4723 -2.8 -2.7 Carbamoyl-phosphate synthase large chain compare
PP_4938 -2.8 -11.8 putative Glycosyl transferase compare
PP_1001 -2.8 -7.4 arginine deiminase compare
PP_4004 -2.8 -12.5 DNA translocase FtsK compare
PP_0393 -2.5 -4.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0846 -2.5 -2.7 DnaK-like molecular chaperone specific for IscU compare
PP_4724 -2.4 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_1002 -2.4 -8.9 arginine/ornithine antiporter compare
PP_4902 -2.4 -5.1 Oligoribonuclease compare
PP_1783 -2.3 -3.5 dTDP-glucose pyrophosphorylase compare
PP_4999 -2.2 -1.5 dihydroorotase-like protein compare
PP_1734 -2.1 -6.7 Probable septum site-determining protein MinC compare
PP_1000 -2.1 -6.8 ornithine carbamoyltransferase, catabolic compare
PP_4909 -2.0 -8.6 phosphoserine phosphatase compare
PP_0999 -2.0 -5.6 carbamate kinase compare
PP_0719 -1.9 -2.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1216 -1.8 -6.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4942 -1.7 -4.3 conserved protein of unknown function compare
PP_1217 -1.7 -6.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1215 -1.7 -3.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_0164 -1.7 -6.0 conserved protein of unknown function compare
PP_1994 -1.7 -3.3 tRNA pseudouridine (38-40)synthase compare
PP_2328 -1.6 -5.9 Phosphoadenosine phosphosulfate reductase compare
PP_1232 -1.6 -8.7 conserved exported protein of unknown function compare
PP_1468 -1.6 -4.7 Tyrosine recombinase XerD compare
PP_3999 -1.6 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1664 -1.6 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0998 -1.6 -6.9 conserved protein of unknown function compare
PP_4058 -1.5 -10.3 1,4-alpha-glucan branching enzyme compare
PP_1733 -1.5 -3.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_5329 -1.5 -3.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4122 -1.5 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2370 -1.5 -3.1 conserved protein of unknown function compare
PP_0339 -1.4 -3.3 Pyruvate dehydrogenase E1 component compare
PP_2371 -1.4 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0833 -1.4 -2.1 queuine tRNA-ribosyltransferase compare
PP_1353 -1.3 -3.0 conserved membrane protein of unknown function compare
PP_4696 -1.3 -4.8 Nitrogen regulation protein NR(I) compare
PP_4994 -1.3 -4.8 conserved protein of unknown function compare
PP_0888 -1.3 -3.5 Photosynthetic apparatus regulatory protein RegA compare
PP_2378 -1.3 -2.8 Fe/S biogenesis protein NfuA compare
PP_1381 -1.3 -1.8 4-carboxymuconolactone decarboxylase compare
PP_4874 -1.2 -1.7 50S ribosomal protein L9 compare
PP_2402 -1.2 -3.2 putative Sensor histidine kinase compare
PP_4964 -1.2 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0127 -1.2 -4.3 Thiol:disulfide interchange protein compare
PP_1764 -1.1 -3.2 Phosphoglycolate phosphatase 2 compare
PP_0855 -1.1 -1.9 conserved protein of unknown function compare
PP_t12 -1.1 -1.6 tRNA-Thr compare
PP_4880 -1.1 -7.2 exoribonuclease R compare
PP_4008 -1.1 -5.9 ATP-dependent serine protease compare
PP_2336 -1.1 -3.8 aconitate hydratase 1 compare
PP_5248 -1.0 -1.7 putative hydrolase compare
PP_5310 -1.0 -5.6 junction-specific ATP-dependent DNA helicase compare
PP_2145 -1.0 -2.7 beta-N-acetylglucosaminidase compare
PP_1214 -1.0 -3.5 putative transcriptional regulatory protein compare
PP_4941 -1.0 -3.9 conserved exported protein of unknown function compare
PP_0566 -1.0 -1.4 translation-related factor compare
PP_5327 -1.0 -3.5 putative phosphate ABC transporter, permease subunit compare
PP_4204 -1.0 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1022 -1.0 -4.8 glucose 6-phosphate-1-dehydrogenase compare
PP_0293 -1.0 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5328 -1.0 -2.3 putative phosphate transport system permease protein compare
PP_2029 -1.0 -3.1 von Willebrand factor type A domain protein compare
PP_5084 -0.9 -5.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1208 -0.9 -2.5 conserved protein of unknown function, SlyX family compare
PP_t11 -0.9 -1.9 tRNA-Lys compare
PP_1187 -0.9 -4.9 sensor protein compare
PP_3904 -0.9 -2.3 conserved protein of unknown function compare
PP_1493 -0.9 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2299 -0.9 -4.5 Trigger factor compare
PP_2932 -0.9 -4.7 Amidase family protein compare
PP_4785 -0.9 -3.8 conserved exported protein of unknown function compare
PP_0001 -0.9 -1.2 probable chromosome-partitioning protein compare
PP_0022 -0.9 -1.2 hypothetical protein compare
PP_3185 -0.9 -3.5 Pet18 protein compare
PP_4482 -0.8 -3.1 Transcriptional regulator, AraC family compare
PP_2414 -0.8 -1.1 conserved exported protein of unknown function compare
PP_0513 -0.8 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5393 -0.8 -1.4 putative metal-binding chaperone compare
PP_1076 -0.8 -3.9 aquaglyceroporin compare
PP_2718 -0.8 -1.6 arsenic resistance transcriptional regulator compare
PP_0150 -0.8 -2.2 conserved exported protein of unknown function compare
PP_5155 -0.8 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5185 -0.8 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2225 -0.8 -4.5 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_1656 -0.8 -3.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_5706 -0.8 -1.1 Sec translocation complex - SecG subunit compare
PP_4793 -0.8 -2.3 conserved protein of unknown function compare
PP_2459 -0.8 -2.4 ribose pyranase compare
PP_3241 -0.8 -1.3 conserved exported protein of unknown function compare
PP_4546 -0.8 -3.0 ATP-dependent helicase HrpA compare
PP_0184 -0.7 -3.9 Argininosuccinate lyase compare
PP_4130 -0.7 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3946 -0.7 -1.0 HTH-type transcriptional repressor NicR compare
PP_2441 -0.7 -1.9 conserved protein of unknown function compare
PP_2307 -0.7 -2.1 conserved protein of unknown function compare
PP_0949 -0.7 -3.7 putative ATP-binding protein UPF0042 compare
PP_0547 -0.7 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5350 -0.7 -2.6 Transcriptional regulator, RpiR family compare
PP_0292 -0.7 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0758 -0.7 -3.3 conserved protein of unknown function compare
PP_0003 -0.7 -3.1 16S RNA methyltransferase compare
PP_0290 -0.7 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4701 -0.7 -0.9 glucose-6-phosphate isomerase compare
PP_1128 -0.7 -1.8 OmpA family protein compare
PP_2327 -0.7 -3.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3821 -0.7 -4.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1325 -0.7 -4.7 putative lipoprotein compare
PP_4362 -0.7 -2.8 conserved protein of unknown function compare
PP_5583 -0.7 -2.1 conserved protein of unknown function compare
PP_1553 -0.7 -1.4 conserved protein of unknown function compare
PP_1836 -0.7 -1.8 putative metal transporter, ZIP family compare
PP_1293 -0.7 -1.4 molybdopterin synthase small subunit compare
PP_5014 -0.7 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0809 -0.7 -4.0 disulfide bond formation protein B compare
PP_4342 -0.7 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_4997 -0.7 -1.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0401 -0.7 -2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_2720 -0.7 -1.2 conserved protein of unknown function compare
PP_1632 -0.7 -2.0 conserved protein of unknown function compare
PP_5652 -0.7 -2.7 conserved protein of unknown function, phage origin compare
PP_5090 -0.6 -1.4 putative cell division protein compare
PP_4098 -0.6 -1.8 UvrABC system protein C compare
PP_2181 -0.6 -2.7 Transcriptional regulator, Cro/CI family compare
PP_2132 -0.6 -1.9 Universal stress protein compare
PP_4247 -0.6 -1.3 Exonuclease compare
PP_5621 -0.6 -2.1 protein of unknown function compare
PP_2442 -0.6 -1.9 conserved protein of unknown function, DUF480 family compare
PP_4835 -0.6 -1.1 conserved exported protein of unknown function compare
PP_4944 -0.6 -1.8 Carbamoyltransferase compare
PP_5644 -0.6 -1.7 conserved membrane protein of unknown function compare
PP_4642 -0.6 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_4787 -0.6 -1.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1075 -0.6 -4.2 glycerol kinase compare
PP_1912 -0.6 -2.1 Phosphate acyltransferase compare
PP_4131 -0.6 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_5007 -0.6 -1.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4124 -0.6 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_2217 -0.6 -1.5 enoyl-CoA hydratase compare
PP_1779 -0.6 -3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1088 -0.6 -4.7 Argininosuccinate synthase compare
PP_2226 -0.6 -2.7 putative K(+)/H(+) antiporter subunit F compare
PP_1362 -0.6 -3.0 pyruvate kinase II compare
PP_1938 -0.6 -1.6 conserved protein of unknown function compare
PP_1589 -0.6 -4.0 uridylyltransferase compare
PP_5225 -0.6 -1.1 frataxin compare
PP_4952 -0.6 -0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2665 -0.6 -2.4 Glycerol metabolism activator compare
PP_1198 -0.6 -1.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0123 -0.6 -4.1 DNA polymerase I, 5 compare
PP_1690 -0.6 -2.5 conserved protein of unknown function compare
PP_2322 -0.6 -3.1 Major outer membrane lipoprotein compare
PP_1186 -0.6 -1.0 two component system DNA-binding transcriptional dual regulator compare
PP_1097 -0.6 -0.9 Methionine--tRNA ligase compare
PP_2433 -0.6 -1.2 conserved protein of unknown function compare
PP_3971 -0.6 -1.2 conserved protein of unknown function compare
PP_2088 -0.6 -2.0 RNA polymerase sigma factor SigX compare
PP_4559 -0.6 -2.4 peptide deformylase compare
PP_0938 -0.6 -3.9 conserved protein of unknown function compare
PP_5289 -0.6 -2.2 Acetylglutamate kinase compare
PP_0978 -0.5 -1.4 conserved protein of unknown function compare
PP_5217 -0.5 -4.0 Polyphosphate kinase compare
PP_3312 -0.5 -0.9 putative Heat shock protein compare
PP_3073 -0.5 -2.3 3-hydroxybutyrate dehydrogenase compare
PP_4833 -0.5 -2.0 SURF1 domain protein compare
PP_2417 -0.5 -2.5 putative Iron ABC transporter, permease protein compare
PP_4561 -0.5 -0.6 stress response protein compare
PP_4340 -0.5 -1.3 response regulator for chemotactic signal transduction compare
PP_1834 -0.5 -2.5 conserved protein of unknown function compare
PP_1536 -0.5 -2.3 conserved protein of unknown function compare
PP_4126 -0.5 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_1206 -0.5 -3.5 basic-amino-acid specific porin OprD compare
PP_0801 -0.5 -1.0 conserved exported protein of unknown function compare
PP_1238 -0.5 -2.8 putative Lipoprotein compare
PP_3771 -0.5 -1.7 conserved protein of unknown function compare
PP_4981 -0.5 -1.0 polyisoprene-binding protein, acidic stress response factor compare
PP_1568 -0.5 -1.0 conserved protein of unknown function compare
PP_4364 -0.5 -1.8 putative Anti-sigma F factor antagonist compare
PP_2684 -0.5 -1.8 conserved membrane protein of unknown function compare
PP_1778 -0.5 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4286 -0.5 -2.9 allantoinase compare
PP_4136 -0.5 -0.9 Transcriptional regulator, LuxR family compare
PP_4792 -0.5 -1.8 conserved exported protein of unknown function compare
PP_4471 -0.5 -2.0 Magnesium transporter compare


Specific Phenotypes

For 1 genes in this experiment