Experiment set36IT075 for Pseudomonas putida KT2440

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
PP_4265 -4.8 -3.3 DNA-binding transcriptional dual regulator compare
PP_4700 -4.4 -6.0 pantothenate synthetase compare
PP_0691 -4.2 -5.3 Glutamate 5-kinase compare
PP_4799 -4.0 -2.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4902 -3.9 -5.2 Oligoribonuclease compare
PP_1654 -3.7 -3.6 cysteine synthase B compare
PP_0856 -3.5 -6.1 conserved lipoprotein of unknown function compare
PP_4693 -3.5 -7.1 RNA polymerase-binding transcription factor DksA compare
PP_0833 -3.4 -4.0 queuine tRNA-ribosyltransferase compare
PP_1237 -3.2 -3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4724 -3.0 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_5095 -2.9 -2.5 pyrroline-5-carboxylate reductase compare
PP_4723 -2.8 -3.8 Carbamoyl-phosphate synthase large chain compare
PP_4936 -2.8 -8.2 O-antigen polymerase compare
PP_4943 -2.7 -3.8 putative Glycosyl transferase compare
PP_0393 -2.6 -4.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4560 -2.6 -7.3 putative Ribonuclease BN compare
PP_4004 -2.5 -8.2 DNA translocase FtsK compare
PP_1001 -2.4 -4.6 arginine deiminase compare
PP_2378 -2.4 -3.4 Fe/S biogenesis protein NfuA compare
PP_1002 -2.3 -7.9 arginine/ornithine antiporter compare
PP_4938 -2.3 -9.5 putative Glycosyl transferase compare
PP_4999 -2.2 -1.5 dihydroorotase-like protein compare
PP_5706 -2.2 -2.8 Sec translocation complex - SecG subunit compare
PP_3999 -2.1 -7.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1468 -2.1 -5.9 Tyrosine recombinase XerD compare
PP_1733 -1.9 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4804 -1.9 -3.6 RlpA-like lipoprotein compare
PP_1000 -1.8 -4.5 ornithine carbamoyltransferase, catabolic compare
PP_1664 -1.8 -3.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4940 -1.8 -7.7 Putative glycosyltransferase compare
PP_1734 -1.7 -4.9 Probable septum site-determining protein MinC compare
PP_0719 -1.7 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5216 -1.7 -1.9 exopolyphosphatase compare
PP_1215 -1.6 -4.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4342 -1.6 -4.4 flagellar synthesis regulator, putative ATPase compare
PP_4880 -1.5 -8.1 exoribonuclease R compare
PP_2371 -1.5 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2336 -1.5 -3.5 aconitate hydratase 1 compare
PP_0339 -1.5 -3.8 Pyruvate dehydrogenase E1 component compare
PP_0855 -1.4 -1.3 conserved protein of unknown function compare
PP_5114 -1.4 -2.1 putative adenine methyltransferase compare
PP_1208 -1.4 -3.6 conserved protein of unknown function, SlyX family compare
PP_4895 -1.4 -3.5 tRNA dimethylallyltransferase compare
PP_0999 -1.4 -2.4 carbamate kinase compare
PP_1353 -1.4 -4.5 conserved membrane protein of unknown function compare
PP_5329 -1.4 -3.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0888 -1.4 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_4271 -1.4 -1.4 conserved protein of unknown function compare
PP_2370 -1.4 -2.1 conserved protein of unknown function compare
PP_4204 -1.4 -4.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0401 -1.3 -4.9 Ribosomal RNA small subunit methyltransferase A compare
PP_0846 -1.3 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_1216 -1.3 -4.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1217 -1.3 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0949 -1.3 -5.5 putative ATP-binding protein UPF0042 compare
PP_1632 -1.3 -2.6 conserved protein of unknown function compare
PP_1232 -1.2 -5.9 conserved exported protein of unknown function compare
PP_2328 -1.2 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_1656 -1.2 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1994 -1.2 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_2299 -1.2 -3.8 Trigger factor compare
PP_5155 -1.2 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2747 -1.2 -2.2 conserved protein of unknown function compare
PP_4058 -1.1 -6.9 1,4-alpha-glucan branching enzyme compare
PP_0998 -1.1 -4.5 conserved protein of unknown function compare
PP_0164 -1.1 -4.2 conserved protein of unknown function compare
PP_5575 -1.1 -2.3 conserved protein of unknown function compare
PP_0566 -1.1 -1.2 translation-related factor compare
PP_1164 -1.1 -1.6 Transcriptional regulator, LysR family compare
PP_4126 -1.1 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_0065 -1.0 -2.6 NAD-binding component of TrK potassium transporter compare
PP_1045 -1.0 -1.6 Type II secretion pathway protein XcpP compare
PP_1783 -1.0 -1.7 dTDP-glucose pyrophosphorylase compare
PP_4909 -1.0 -3.7 phosphoserine phosphatase compare
PP_1008 -1.0 -1.8 RNA polymerase subunit sigma-24 compare
PP_1186 -1.0 -1.3 two component system DNA-binding transcriptional dual regulator compare
PP_2307 -1.0 -1.8 conserved protein of unknown function compare
PP_5310 -1.0 -5.0 junction-specific ATP-dependent DNA helicase compare
PP_4989 -1.0 -1.9 Protein PilJ compare
PP_5028 -1.0 -2.9 proline iminopeptidase compare
PP_t29 -1.0 -2.2 tRNA-Ala compare
PP_1764 -0.9 -2.4 Phosphoglycolate phosphatase 2 compare
PP_0184 -0.9 -3.6 Argininosuccinate lyase compare
PP_5652 -0.9 -2.4 conserved protein of unknown function, phage origin compare
PP_5327 -0.9 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_4942 -0.9 -1.5 conserved protein of unknown function compare
PP_4697 -0.9 -2.1 poly(A) polymerase compare
PP_0236 -0.9 -2.2 NAD(P)H-dependent FMN reductase subunit compare
PP_1187 -0.9 -4.5 sensor protein compare
PP_5486 -0.9 -1.0 conserved protein of unknown function compare
PP_5528 -0.9 -1.8 conserved protein of unknown function compare
PP_4008 -0.9 -3.7 ATP-dependent serine protease compare
PP_0290 -0.9 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1020 -0.9 -2.3 putative glucose-6-phosphate 1-epimerase compare
PP_5328 -0.9 -1.7 putative phosphate transport system permease protein compare
PP_4696 -0.9 -2.5 Nitrogen regulation protein NR(I) compare
PP_3519 -0.8 -1.1 putative Lipoprotein compare
PP_1553 -0.8 -1.2 conserved protein of unknown function compare
PP_4707 -0.8 -1.9 OsmY-related protein compare
PP_5084 -0.8 -4.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2402 -0.8 -1.5 putative Sensor histidine kinase compare
PP_2327 -0.8 -2.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4332 -0.8 -3.9 Chemotaxis protein CheW compare
PP_0003 -0.8 -2.8 16S RNA methyltransferase compare
PP_3506 -0.8 -3.3 Magnesium chelatase, subunit ChII compare
PP_5514 -0.8 -3.3 conserved protein of unknown function compare
PP_0938 -0.8 -5.0 conserved protein of unknown function compare
PP_2159 -0.8 -2.9 Copper-binding protein, plastocyanin/azurin family compare
PP_5248 -0.8 -1.4 putative hydrolase compare
PP_1041 -0.8 -1.4 twin arginine protein export complex subunit compare
PP_2214 -0.8 -1.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2122 -0.8 -2.4 molybdenum cofactor biosynthesis protein B compare
PP_1912 -0.8 -2.6 Phosphate acyltransferase compare
PP_5610 -0.8 -1.6 protein of unknown function compare
PP_2060 -0.8 -1.9 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2718 -0.8 -1.9 arsenic resistance transcriptional regulator compare
PP_0513 -0.8 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3378 -0.8 -1.7 putative 2-ketogluconokinase compare
PP_1344 -0.8 -1.2 conserved protein of unknown function compare
PP_2898 -0.7 -1.7 conserved exported protein of unknown function compare
PP_1938 -0.7 -1.8 conserved protein of unknown function compare
PP_4124 -0.7 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_1589 -0.7 -3.8 uridylyltransferase compare
PP_4988 -0.7 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5487 -0.7 -1.0 conserved protein of unknown function compare
PP_3729 -0.7 -3.0 Periplasmic amino acid-binding protein-related protein compare
PP_5227 -0.7 -3.6 diaminopimelate decarboxylase compare
PP_0801 -0.7 -1.1 conserved exported protein of unknown function compare
PP_1022 -0.7 -3.3 glucose 6-phosphate-1-dehydrogenase compare
PP_4120 -0.7 -1.5 NADH-quinone oxidoreductase subunit B compare
PP_2931 -0.7 -2.9 conserved protein of unknown function compare
PP_t12 -0.7 -1.0 tRNA-Thr compare
PP_2172 -0.7 -1.8 conserved exported protein of unknown function compare
PP_4009 -0.7 -2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_3018 -0.7 -2.7 conserved protein of unknown function compare
PP_3198 -0.7 -1.8 Ferredoxin, 2Fe-2S compare
PP_4569 -0.7 -2.1 conserved protein of unknown function compare
PP_2145 -0.7 -1.9 beta-N-acetylglucosaminidase compare
PP_1790 -0.7 -1.7 putative Acylneuraminate cytidylyltransferase compare
PP_3840 -0.7 -1.3 conserved protein of unknown function compare
PP_0685 -0.7 -1.3 conserved protein of unknown function compare
PP_0872 -0.7 -2.8 Peptide chain release factor 3 compare
PP_3771 -0.7 -2.5 conserved protein of unknown function compare
PP_4471 -0.7 -2.4 Magnesium transporter compare
PP_0832 -0.7 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1834 -0.7 -2.1 conserved protein of unknown function compare
PP_0274 -0.7 -1.2 putative transcriptional regulator containing HTH domain compare
PP_4875 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_4593 -0.7 -0.9 conserved protein of unknown function compare
PP_0508 -0.7 -1.8 conserved exported protein of unknown function compare
PP_2306 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4122 -0.7 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4045 -0.7 -0.8 conserved protein of unknown function compare
PP_1303 -0.7 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_3971 -0.6 -0.9 conserved protein of unknown function compare
PP_5201 -0.6 -1.1 conserved protein of unknown function, UPF0149 family compare
PP_1076 -0.6 -2.7 aquaglyceroporin compare
PP_4288 -0.6 -1.9 ureidoglycolate lyase compare
PP_2750 -0.6 -2.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3551 -0.6 -1.3 DNA-binding response regulator, LuxR family compare
PP_4785 -0.6 -2.7 conserved exported protein of unknown function compare
PP_5582 -0.6 -1.0 conserved protein of unknown function compare
PP_1075 -0.6 -3.3 glycerol kinase compare
PP_2737 -0.6 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1922 -0.6 -2.8 conserved protein of unknown function compare
PP_0841 -0.6 -1.9 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_2932 -0.6 -3.0 Amidase family protein compare
PP_1629 -0.6 -3.0 Protein RecA compare
PP_3892 -0.6 -0.9 conserved protein of unknown function compare
PP_2446 -0.6 -2.6 conserved exported protein of unknown function compare
PP_1935 -0.6 -1.3 Transcriptional regulator, Cro/CI family compare
PP_0117 -0.6 -2.7 Zn(2+) ABC transporter - permease subunit compare
PP_1562 -0.6 -0.9 putative Phage terminase, small subunit compare
PP_2291 -0.6 -1.6 conserved protein of unknown function compare
PP_1836 -0.6 -1.6 putative metal transporter, ZIP family compare
PP_4546 -0.6 -2.1 ATP-dependent helicase HrpA compare
PP_2960 -0.6 -1.5 transcriptional regulator, AraC family compare
PP_4482 -0.6 -1.7 Transcriptional regulator, AraC family compare
PP_1605 -0.6 -2.1 Ribonuclease HII compare
PP_2459 -0.6 -1.2 ribose pyranase compare
PP_2550 -0.6 -1.5 putative transcriptional regulatory protein compare
PP_3121 -0.6 -1.9 transcriptional regulator, LysR family compare
PP_3469 -0.6 -2.2 conserved protein of unknown function compare
PP_4701 -0.6 -0.6 glucose-6-phosphate isomerase compare
PP_1013 -0.6 -2.4 Sensor histidine kinase compare
PP_3035 -0.6 -0.7 conserved protein of unknown function compare
PP_1609 -0.6 -1.7 conserved protein of unknown function compare
PP_1719 -0.6 -3.5 Tail-specific protease prc compare
PP_0119 -0.6 -1.4 putative zinc uptake regulation protein ZUR compare
PP_3508 -0.6 -1.5 Protein CobW compare
PP_4792 -0.6 -1.1 conserved exported protein of unknown function compare
PP_0439 -0.6 -2.3 conserved protein of unknown function compare
PP_0893 -0.6 -1.9 ThiJ/PfpI family protein compare
PP_1555 -0.6 -2.8 putative Phage integrase compare
PP_3821 -0.6 -2.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2302 -0.6 -2.3 DNA-binding, ATP-dependent protease compare
PP_4859 -0.6 -1.2 Transcriptional regulator, TetR family compare
PP_1198 -0.6 -1.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5717 -0.6 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control experiments