Experiment set36IT074 for Pseudomonas putida KT2440

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.5 -3.8 Glutamate 5-kinase compare
PP_4804 -4.1 -6.1 RlpA-like lipoprotein compare
PP_4799 -4.0 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -3.9 -7.2 conserved lipoprotein of unknown function compare
PP_4700 -3.5 -6.2 pantothenate synthetase compare
PP_4265 -3.4 -5.6 DNA-binding transcriptional dual regulator compare
PP_4943 -3.1 -5.2 putative Glycosyl transferase compare
PP_5095 -3.0 -2.7 pyrroline-5-carboxylate reductase compare
PP_4693 -3.0 -6.8 RNA polymerase-binding transcription factor DksA compare
PP_4940 -3.0 -10.8 Putative glycosyltransferase compare
PP_4938 -3.0 -12.2 putative Glycosyl transferase compare
PP_1654 -2.9 -4.1 cysteine synthase B compare
PP_4723 -2.8 -3.9 Carbamoyl-phosphate synthase large chain compare
PP_0393 -2.8 -4.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4004 -2.8 -10.0 DNA translocase FtsK compare
PP_4936 -2.8 -11.6 O-antigen polymerase compare
PP_1734 -2.7 -8.1 Probable septum site-determining protein MinC compare
PP_1215 -2.6 -3.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4724 -2.5 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_1002 -2.4 -9.5 arginine/ornithine antiporter compare
PP_0833 -2.2 -3.7 queuine tRNA-ribosyltransferase compare
PP_4902 -2.2 -4.5 Oligoribonuclease compare
PP_0999 -2.2 -8.3 carbamate kinase compare
PP_4560 -2.2 -7.0 putative Ribonuclease BN compare
PP_0719 -2.1 -2.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4895 -2.1 -4.3 tRNA dimethylallyltransferase compare
PP_1001 -2.0 -5.3 arginine deiminase compare
PP_1000 -1.9 -6.3 ornithine carbamoyltransferase, catabolic compare
PP_0846 -1.9 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_2371 -1.8 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -1.8 -8.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1217 -1.8 -6.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1237 -1.7 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0888 -1.7 -4.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1353 -1.6 -4.3 conserved membrane protein of unknown function compare
PP_0164 -1.6 -6.6 conserved protein of unknown function compare
PP_4999 -1.6 -1.5 dihydroorotase-like protein compare
PP_1664 -1.5 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4909 -1.5 -6.6 phosphoserine phosphatase compare
PP_0630 -1.5 -1.9 DNA gyrase inhibitor YacG compare
PP_1216 -1.5 -5.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4008 -1.4 -7.0 ATP-dependent serine protease compare
PP_1764 -1.4 -4.5 Phosphoglycolate phosphatase 2 compare
PP_0339 -1.4 -3.9 Pyruvate dehydrogenase E1 component compare
PP_1553 -1.4 -2.1 conserved protein of unknown function compare
PP_1468 -1.4 -2.7 Tyrosine recombinase XerD compare
PP_1208 -1.4 -3.0 conserved protein of unknown function, SlyX family compare
PP_4058 -1.3 -9.0 1,4-alpha-glucan branching enzyme compare
PP_1733 -1.3 -5.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_5155 -1.3 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2402 -1.3 -2.8 putative Sensor histidine kinase compare
PP_t12 -1.3 -1.7 tRNA-Thr compare
PP_1187 -1.2 -7.3 sensor protein compare
PP_2145 -1.2 -3.8 beta-N-acetylglucosaminidase compare
PP_5644 -1.2 -2.2 conserved membrane protein of unknown function compare
PP_4880 -1.2 -8.5 exoribonuclease R compare
PP_4942 -1.2 -2.4 conserved protein of unknown function compare
PP_5329 -1.2 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5310 -1.1 -6.2 junction-specific ATP-dependent DNA helicase compare
PP_0998 -1.1 -6.0 conserved protein of unknown function compare
PP_4941 -1.1 -4.5 conserved exported protein of unknown function compare
PP_2328 -1.1 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_1632 -1.1 -2.3 conserved protein of unknown function compare
PP_5328 -1.1 -2.8 putative phosphate transport system permease protein compare
PP_1232 -1.1 -5.0 conserved exported protein of unknown function compare
PP_4994 -1.1 -3.5 conserved protein of unknown function compare
PP_4129 -1.0 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4964 -1.0 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1656 -1.0 -3.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_5045 -1.0 -4.2 tRNA sulfurtransferase compare
PP_0003 -1.0 -3.0 16S RNA methyltransferase compare
PP_4785 -1.0 -4.9 conserved exported protein of unknown function compare
PP_0127 -1.0 -5.2 Thiol:disulfide interchange protein compare
PP_2087 -1.0 -2.5 CmpX protein compare
PP_4944 -1.0 -2.3 Carbamoyltransferase compare
PP_4952 -1.0 -2.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4098 -1.0 -3.0 UvrABC system protein C compare
PP_1076 -1.0 -4.8 aquaglyceroporin compare
PP_0001 -1.0 -1.3 probable chromosome-partitioning protein compare
PP_2370 -0.9 -1.9 conserved protein of unknown function compare
PP_4787 -0.9 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1022 -0.9 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4254 -0.9 -2.3 conserved protein of unknown function compare
PP_1999 -0.9 -2.2 membrane protein required for colicin V production compare
PP_2299 -0.9 -3.4 Trigger factor compare
PP_1186 -0.9 -1.5 two component system DNA-binding transcriptional dual regulator compare
PP_4546 -0.9 -3.6 ATP-dependent helicase HrpA compare
PP_5289 -0.9 -4.2 Acetylglutamate kinase compare
PP_3637 -0.9 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1783 -0.9 -1.5 dTDP-glucose pyrophosphorylase compare
PP_2217 -0.9 -2.7 enoyl-CoA hydratase compare
PP_1045 -0.9 -1.5 Type II secretion pathway protein XcpP compare
PP_4131 -0.9 -3.6 NADH-quinone oxidoreductase subunit N compare
PP_2932 -0.9 -5.4 Amidase family protein compare
PP_2442 -0.9 -2.1 conserved protein of unknown function, DUF480 family compare
PP_1344 -0.9 -1.2 conserved protein of unknown function compare
PP_4204 -0.9 -2.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4471 -0.8 -3.7 Magnesium transporter compare
PP_1898 -0.8 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PP_3904 -0.8 -4.0 conserved protein of unknown function compare
PP_2229 -0.8 -2.5 putative K(+)/H(+) antiporter subunit C compare
PP_5610 -0.8 -1.6 protein of unknown function compare
PP_2336 -0.8 -3.2 aconitate hydratase 1 compare
PP_2378 -0.8 -2.6 Fe/S biogenesis protein NfuA compare
PP_0547 -0.8 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0184 -0.8 -3.8 Argininosuccinate lyase compare
PP_4199 -0.8 -1.1 putative Lipoprotein compare
PP_4342 -0.8 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_0809 -0.8 -5.4 disulfide bond formation protein B compare
PP_4642 -0.8 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_5359 -0.8 -2.2 CobW/P47K family protein compare
PP_5185 -0.8 -3.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4009 -0.8 -2.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_1088 -0.8 -5.2 Argininosuccinate synthase compare
PP_0123 -0.8 -5.4 DNA polymerase I, 5 compare
PP_5093 -0.7 -1.2 twitching motility protein compare
PP_3989 -0.7 -3.7 DNA-cytosine methyltransferase compare
PP_2441 -0.7 -2.1 conserved protein of unknown function compare
PP_1198 -0.7 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5084 -0.7 -5.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4988 -0.7 -3.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2684 -0.7 -2.6 conserved membrane protein of unknown function compare
PP_2665 -0.7 -2.4 Glycerol metabolism activator compare
PP_4340 -0.7 -1.6 response regulator for chemotactic signal transduction compare
PP_4961 -0.7 -2.1 putative Lipoprotein compare
PP_1055 -0.7 -1.1 Type II secretion pathway protein GspN compare
PP_1778 -0.7 -3.7 Lipopolysaccharide ABC export system, permease protein compare
PP_2302 -0.7 -3.3 DNA-binding, ATP-dependent protease compare
PP_5583 -0.7 -1.2 conserved protein of unknown function compare
PP_2307 -0.7 -1.2 conserved protein of unknown function compare
PP_4124 -0.7 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_1994 -0.7 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_5090 -0.7 -1.0 putative cell division protein compare
PP_4696 -0.7 -2.4 Nitrogen regulation protein NR(I) compare
PP_0978 -0.7 -2.0 conserved protein of unknown function compare
PP_0022 -0.7 -0.9 hypothetical protein compare
PP_4738 -0.7 -2.2 conserved exported protein of unknown function compare
PP_1589 -0.7 -4.2 uridylyltransferase compare
PP_0949 -0.7 -3.5 putative ATP-binding protein UPF0042 compare
PP_5393 -0.7 -1.3 putative metal-binding chaperone compare
PP_0794 -0.7 -1.5 1-phosphofructokinase monomer compare
PP_4874 -0.7 -1.2 50S ribosomal protein L9 compare
PP_0959 -0.7 -2.1 phospholipid ABC transporter compare
PP_0290 -0.7 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_t29 -0.6 -1.4 tRNA-Ala compare
PP_2631 -0.6 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0673 -0.6 -1.8 conserved protein of unknown function compare
PP_4228 -0.6 -3.2 conserved protein of unknown function compare
PP_1428 -0.6 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_5507 -0.6 -2.1 protein of unknown function compare
PP_2291 -0.6 -2.2 conserved protein of unknown function compare
PP_1325 -0.6 -3.6 putative lipoprotein compare
PP_0293 -0.6 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2646 -0.6 -2.8 conserved protein of unknown function compare
PP_0236 -0.6 -2.5 NAD(P)H-dependent FMN reductase subunit compare
PP_3065 -0.6 -3.2 Pyocin R2_PP, tail formation compare
PP_5486 -0.6 -2.0 conserved protein of unknown function compare
PP_4699 -0.6 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2122 -0.6 -3.2 molybdenum cofactor biosynthesis protein B compare
PP_2976 -0.6 -1.0 putative transposase compare
PP_2247 -0.6 -2.1 putative Endoribonuclease compare
PP_5230 -0.6 -2.2 Tyrosine recombinase XerC compare
PP_5652 -0.6 -2.6 conserved protein of unknown function, phage origin compare
PP_1038 -0.6 -1.0 conserved protein of unknown function compare
PP_1493 -0.6 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4584 -0.6 -2.9 putative endonuclease compare
PP_4392 -0.6 -3.1 chemotaxis protein methyltransferase compare
PP_3158 -0.6 -3.2 conserved exported protein of unknown function compare
PP_0401 -0.6 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_3241 -0.6 -1.0 conserved exported protein of unknown function compare
PP_0914 -0.6 -4.2 GGDEF domain protein compare
PP_1779 -0.6 -3.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1185 -0.6 -4.0 Outer membrane protein H1 compare
PP_1238 -0.6 -3.1 putative Lipoprotein compare
PP_1568 -0.6 -1.1 conserved protein of unknown function compare
PP_5217 -0.6 -4.5 Polyphosphate kinase compare
PP_0292 -0.6 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5SB -0.6 -2.2 5S ribosomal RNA compare
PP_2142 -0.6 -1.0 Cell division inhibitor SulA compare
PP_5327 -0.6 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_5706 -0.6 -0.8 Sec translocation complex - SecG subunit compare
PP_1629 -0.6 -2.9 Protein RecA compare
PP_3679 -0.6 -3.0 conserved protein of unknown function compare
PP_1813 -0.6 -1.9 ComEA-related protein compare
PP_5198 -0.6 -1.6 conserved protein of unknown function compare
PP_0938 -0.6 -3.9 conserved protein of unknown function compare
PP_1206 -0.6 -3.7 basic-amino-acid specific porin OprD compare
PP_0758 -0.6 -2.4 conserved protein of unknown function compare
PP_0266 -0.5 -3.2 Agmatine deiminase compare
PP_4697 -0.5 -1.3 poly(A) polymerase compare
PP_5350 -0.5 -2.4 Transcriptional regulator, RpiR family compare
PP_0841 -0.5 -1.9 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1304 -0.5 -3.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0040 -0.5 -2.1 hypothetical protein compare
PP_2327 -0.5 -2.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1731 -0.5 -1.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0065 -0.5 -1.9 NAD-binding component of TrK potassium transporter compare
PP_5580 -0.5 -1.5 protein of unknown function compare
PP_4701 -0.5 -0.7 glucose-6-phosphate isomerase compare
PP_4793 -0.5 -1.5 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control experiments