Experiment set36IT073 for Pseudomonas putida KT2440

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
PP_4265 -4.6 -3.2 DNA-binding transcriptional dual regulator compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_0856 -3.9 -8.3 conserved lipoprotein of unknown function compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4724 -2.9 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_4693 -2.9 -5.9 RNA polymerase-binding transcription factor DksA compare
PP_0691 -2.6 -5.1 Glutamate 5-kinase compare
PP_4723 -2.5 -4.2 Carbamoyl-phosphate synthase large chain compare
PP_4895 -2.5 -5.4 tRNA dimethylallyltransferase compare
PP_0999 -2.3 -6.1 carbamate kinase compare
PP_1002 -2.2 -7.9 arginine/ornithine antiporter compare
PP_1001 -2.2 -5.1 arginine deiminase compare
PP_4999 -2.1 -1.4 dihydroorotase-like protein compare
PP_4560 -2.1 -6.2 putative Ribonuclease BN compare
PP_1000 -2.0 -7.2 ornithine carbamoyltransferase, catabolic compare
PP_4004 -1.9 -6.8 DNA translocase FtsK compare
PP_5706 -1.8 -2.3 Sec translocation complex - SecG subunit compare
PP_0998 -1.7 -7.4 conserved protein of unknown function compare
PP_4804 -1.7 -4.7 RlpA-like lipoprotein compare
PP_2328 -1.7 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_1783 -1.5 -3.3 dTDP-glucose pyrophosphorylase compare
PP_1733 -1.5 -6.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_3840 -1.5 -2.3 conserved protein of unknown function compare
PP_0888 -1.4 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1217 -1.4 -8.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1208 -1.4 -4.0 conserved protein of unknown function, SlyX family compare
PP_1994 -1.4 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_0393 -1.4 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4058 -1.3 -8.3 1,4-alpha-glucan branching enzyme compare
PP_0001 -1.3 -2.3 probable chromosome-partitioning protein compare
PP_4008 -1.3 -6.9 ATP-dependent serine protease compare
PP_2336 -1.3 -4.1 aconitate hydratase 1 compare
PP_2371 -1.2 -3.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1898 -1.2 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_5095 -1.2 -1.6 pyrroline-5-carboxylate reductase compare
PP_2029 -1.2 -3.6 von Willebrand factor type A domain protein compare
PP_3999 -1.2 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4964 -1.2 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1216 -1.2 -4.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1353 -1.1 -2.8 conserved membrane protein of unknown function compare
PP_1232 -1.1 -6.1 conserved exported protein of unknown function compare
PP_5000 -1.1 -1.9 peptidase component of the ATP-dependent HslVU protease compare
PP_1664 -1.1 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1734 -1.1 -4.8 Probable septum site-determining protein MinC compare
PP_4700 -1.1 -2.5 pantothenate synthetase compare
PP_4546 -1.0 -3.6 ATP-dependent helicase HrpA compare
PP_5644 -1.0 -2.7 conserved membrane protein of unknown function compare
PP_1366 -1.0 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_2442 -1.0 -2.5 conserved protein of unknown function, DUF480 family compare
PP_1344 -1.0 -2.1 conserved protein of unknown function compare
PP_5393 -1.0 -1.7 putative metal-binding chaperone compare
PP_4880 -0.9 -5.8 exoribonuclease R compare
PP_2740 -0.9 -2.0 Transcriptional regulator, MerR family compare
PP_2932 -0.9 -4.5 Amidase family protein compare
PP_1632 -0.9 -2.4 conserved protein of unknown function compare
PP_0685 -0.9 -1.4 conserved protein of unknown function compare
PP_0630 -0.9 -1.4 DNA gyrase inhibitor YacG compare
PP_1215 -0.9 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1187 -0.9 -4.9 sensor protein compare
PP_4342 -0.9 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_0401 -0.9 -3.5 Ribosomal RNA small subunit methyltransferase A compare
PP_5027 -0.9 -1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4471 -0.9 -3.4 Magnesium transporter compare
PP_5329 -0.9 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1731 -0.9 -3.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1829 -0.9 -1.9 Hydrolase, alpha/beta fold family compare
PP_5022 -0.8 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_4268 -0.8 -1.4 nucleoid-associated broad specificity regulator compare
PP_4204 -0.8 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5583 -0.8 -2.0 conserved protein of unknown function compare
PP_4482 -0.8 -1.9 Transcriptional regulator, AraC family compare
PP_1076 -0.8 -3.7 aquaglyceroporin compare
PP_1214 -0.8 -1.7 putative transcriptional regulatory protein compare
PP_3808 -0.8 -1.4 Antibiotic synthesis protein MbtH compare
PP_4902 -0.8 -2.8 Oligoribonuclease compare
PP_1237 -0.8 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -0.8 -2.6 conserved protein of unknown function compare
PP_2402 -0.8 -1.5 putative Sensor histidine kinase compare
PP_0236 -0.8 -2.7 NAD(P)H-dependent FMN reductase subunit compare
PP_4792 -0.8 -2.5 conserved exported protein of unknown function compare
PP_2307 -0.7 -2.1 conserved protein of unknown function compare
PP_4909 -0.7 -3.6 phosphoserine phosphatase compare
PP_0833 -0.7 -1.7 queuine tRNA-ribosyltransferase compare
PP_3339 -0.7 -2.0 conserved exported protein of unknown function compare
PP_2327 -0.7 -2.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5486 -0.7 -1.2 conserved protein of unknown function compare
PP_t11 -0.7 -1.7 tRNA-Lys compare
PP_0406 -0.7 -2.1 Nucleotidyltransferase family protein compare
PP_1742 -0.7 -2.2 conserved inner membrane protein of unknown function compare
PP_1440 -0.7 -3.3 tRNA (mo5U34)-methyltransferase compare
PP_0719 -0.7 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0040 -0.7 -2.5 hypothetical protein compare
PP_5017 -0.7 -1.0 Sec-independent protein translocase protein TatB compare
PP_0949 -0.7 -3.9 putative ATP-binding protein UPF0042 compare
PP_1987 -0.7 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_2132 -0.7 -3.2 Universal stress protein compare
PP_3449 -0.7 -1.3 conserved exported protein of unknown function compare
PP_3378 -0.7 -0.8 putative 2-ketogluconokinase compare
PP_5604 -0.7 -1.7 putative subtilisin-like serine protease compare
PP_0872 -0.7 -3.3 Peptide chain release factor 3 compare
PP_2378 -0.7 -1.6 Fe/S biogenesis protein NfuA compare
PP_2370 -0.7 -1.0 conserved protein of unknown function compare
PP_5507 -0.7 -1.6 protein of unknown function compare
PP_4997 -0.7 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0957 -0.7 -0.8 D-arabinose 5-phosphate isomerase compare
PP_5328 -0.7 -1.6 putative phosphate transport system permease protein compare
PP_4338 -0.7 -3.7 Chemotaxis histidine kinase CheA compare
PP_5028 -0.6 -2.6 proline iminopeptidase compare
PP_0794 -0.6 -2.4 1-phosphofructokinase monomer compare
PP_0065 -0.6 -2.4 NAD-binding component of TrK potassium transporter compare
PP_2441 -0.6 -1.3 conserved protein of unknown function compare
PP_3904 -0.6 -1.5 conserved protein of unknown function compare
PP_5327 -0.6 -1.9 putative phosphate ABC transporter, permease subunit compare
PP_0003 -0.6 -2.2 16S RNA methyltransferase compare
PP_1468 -0.6 -1.4 Tyrosine recombinase XerD compare
PP_2972 -0.6 -0.8 conserved protein of unknown function compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_2989 -0.6 -2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1999 -0.6 -1.5 membrane protein required for colicin V production compare
PP_4168 -0.6 -2.1 conserved protein of unknown function compare
PP_3348 -0.6 -2.6 GGDEF domain protein compare
PP_1455 -0.6 -1.9 conserved protein of unknown function compare
PP_4980 -0.6 -3.2 ATP-dependent RNA helicase compare
PP_4917 -0.6 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1022 -0.6 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_3332 -0.6 -1.3 putative cytochrome c-type protein compare
PP_0150 -0.6 -2.0 conserved exported protein of unknown function compare
PP_1528 -0.6 -1.1 conserved protein of unknown function compare
PP_0425 -0.6 -2.3 conserved protein of unknown function compare
PP_4793 -0.6 -1.1 conserved protein of unknown function compare
PP_1142 -0.6 -0.9 conserved protein of unknown function compare
PP_1808 -0.6 -1.8 glucose-6-phosphate isomerase compare
PP_4387 -0.6 -1.4 conserved exported protein of unknown function compare
PP_0832 -0.6 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4333 -0.6 -3.5 CheW domain protein compare
PP_2655 -0.6 -1.8 conserved protein of unknown function compare
PP_1674 -0.5 -2.4 5,6-dimethylbenzimidazole synthase compare
PP_2311 -0.5 -2.0 Mg-dependent cytoplasmic DNase / RNase compare
PP_3637 -0.5 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2159 -0.5 -2.7 Copper-binding protein, plastocyanin/azurin family compare
PP_3328 -0.5 -1.0 putative Ring-cleaving dioxygenase compare
PP_5701 -0.5 -0.9 conserved protein of unknown function compare
PP_0123 -0.5 -3.2 DNA polymerase I, 5 compare
PP_1679 -0.5 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2846 -0.5 -1.3 urease accessory protein compare
PP_2568 -0.5 -0.8 Ring-cleaving dioxygenase compare
PP_3771 -0.5 -2.2 conserved protein of unknown function compare
PP_1186 -0.5 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_3770 -0.5 -1.3 conserved protein of unknown function compare
PP_0801 -0.5 -0.9 conserved exported protein of unknown function compare
PP_1268 -0.5 -1.6 putative HtrA suppressor protein sohA compare
PP_4787 -0.5 -1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4328 -0.5 -1.7 conserved protein of unknown function compare
PP_0184 -0.5 -3.1 Argininosuccinate lyase compare
PP_2028 -0.5 -2.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1204 -0.5 -2.3 putative Lipoprotein compare
PP_4739 -0.5 -1.8 conserved protein of unknown function compare
PP_2226 -0.5 -2.0 putative K(+)/H(+) antiporter subunit F compare
PP_0738 -0.5 -2.1 conserved protein of unknown function compare
PP_3064 -0.5 -1.8 Phage tail protein compare
PP_0978 -0.5 -1.5 conserved protein of unknown function compare
PP_1442 -0.5 -2.1 conserved protein of unknown function compare
PP_2214 -0.5 -1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1836 -0.5 -1.8 putative metal transporter, ZIP family compare
PP_3241 -0.5 -0.8 conserved exported protein of unknown function compare
PP_5227 -0.5 -2.5 diaminopimelate decarboxylase compare
PP_1004 -0.5 -1.2 conserved protein of unknown function compare
PP_2764 -0.5 -1.3 FMN reductase (NADPH) compare
PP_0960 -0.5 -1.8 phospholipid ABC transporter binding protein compare
PP_4098 -0.5 -1.0 UvrABC system protein C compare
PP_1938 -0.5 -1.3 conserved protein of unknown function compare
PP_2144 -0.5 -1.2 Transcriptional regulator, TetR family compare
PP_5502 -0.5 -2.2 ribosome modulation factor compare
PP_5688 -0.5 -2.6 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_1678 -0.5 -1.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0795 -0.5 -2.8 fructose PTS permease - IIBC component compare
PP_1198 -0.5 -0.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1381 -0.5 -0.8 4-carboxymuconolactone decarboxylase compare
PP_1697 -0.5 -1.2 transcriptional regulator, GntR family compare
PP_1824 -0.5 -1.1 Smr domain protein compare
PP_1826 -0.5 -1.5 Hydrolase, isochorismatase family compare
PP_2766 -0.5 -1.7 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_4198 -0.5 -2.6 OmpA family protein compare
PP_1062 -0.5 -1.4 MutT/nudix family protein compare
PP_1206 -0.5 -2.5 basic-amino-acid specific porin OprD compare
PP_3225 -0.5 -2.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3480 -0.5 -1.4 conserved protein of unknown function compare
PP_3551 -0.5 -1.0 DNA-binding response regulator, LuxR family compare
PP_0772 -0.5 -2.2 Metallo-beta-lactamase family protein compare
PP_3447 -0.5 -0.7 conserved membrane protein of unknown function compare
PP_5083 -0.4 -1.3 putative Type IV pili biogenesis protein PilM compare
PP_2225 -0.4 -2.0 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_t12 -0.4 -0.7 tRNA-Thr compare
PP_3916 -0.4 -1.8 conserved protein of unknown function compare
PP_5500 -0.4 -1.5 protein of unknown function compare
PP_3353 -0.4 -1.9 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_1764 -0.4 -1.5 Phosphoglycolate phosphatase 2 compare
PP_1629 -0.4 -2.6 Protein RecA compare
PP_2526 -0.4 -1.4 conserved membrane protein of unknown function compare
PP_1833 -0.4 -1.6 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms