Experiment set36IT073 for Pseudomonas putida KT2440

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +2.3 20.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +2.3 20.1 Sensor protein GacS compare
PP_3821 +1.7 12.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0504 +1.6 10.3 Outer membrane protein OprG compare
PP_5748 +1.6 4.3 cytochrome c heme lyase subunit compare
PP_4261 +1.5 6.3 cation-transporting P-type ATPase compare
PP_1556 +1.5 4.3 conserved protein of unknown function compare
PP_4940 +1.5 11.3 Putative glycosyltransferase compare
PP_1493 +1.4 3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4355 +1.4 2.7 flagellar export apparatus subunit compare
PP_0593 +1.3 1.9 putative ribosome-binding factor compare
PP_4320 +1.3 5.0 cytochrome c-type biogenesis protein compare
PP_4250 +1.3 9.2 cytochrome c oxidase subunit I, cbb3-type compare
PP_4263 +1.2 5.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4253 +1.2 6.1 cytochrome c oxidase subunit, cbb3-type compare
PP_3287 +1.2 8.5 transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family compare
PP_4262 +1.2 4.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5155 +1.2 5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4260 +1.2 5.9 conserved protein of unknown function compare
PP_4936 +1.1 8.2 O-antigen polymerase compare
PP_4938 +1.1 7.5 putative Glycosyl transferase compare
PP_5313 +1.1 1.4 DNA-binding protein HU-alpha compare
PP_2414 +1.0 2.9 conserved exported protein of unknown function compare
PP_1554 +1.0 3.6 conserved protein of unknown function compare
PP_1799 +1.0 7.7 GDP-mannose 4,6-dehydratase compare
PP_1776 +1.0 8.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0025 +1.0 2.0 hypothetical protein compare
PP_4196 +0.9 3.7 conserved exported protein of unknown function compare
PP_4264 +0.9 6.7 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1176 +0.9 2.6 conserved protein of unknown function compare
PP_t10 +0.9 2.3 tRNA-Pro compare
PP_3365 +0.9 1.7 Acetolactate synthase compare
PP_4251 +0.9 3.0 cytochrome c oxidase subunit, cbb3-type compare
PP_1779 +0.9 5.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1780 +0.9 8.2 putative mannosyltransferase compare
PP_2136 +0.9 4.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4354 +0.9 2.1 flagellar export apparatus subunit compare
PP_1122 +0.9 1.9 OmpA family protein compare
PP_4943 +0.9 3.1 putative Glycosyl transferase compare
PP_5475 +0.9 1.1 conserved protein of unknown function compare
PP_1778 +0.8 4.8 Lipopolysaccharide ABC export system, permease protein compare
PP_3341 +0.8 2.9 nickel-responsive regulator compare
PP_1812 +0.8 1.7 conserved protein of unknown function compare
PP_1802 +0.8 7.3 glycosyl transferase compare
PP_4555 +0.8 3.7 conserved protein of unknown function compare
PP_1557 +0.8 3.7 conserved protein of unknown function compare
PP_1583 +0.8 2.7 putative Structural protein P5 compare
PP_4356 +0.8 2.9 Flagellar protein FliO compare
PP_1410 +0.8 1.6 conserved protein of unknown function compare
PP_1801 +0.8 6.6 Glycosyl transferase WbpY compare
PP_0185 +0.8 5.3 Positive alginate biosynthesis regulatory protein compare
PP_0276 +0.8 1.5 Transcriptional regulator, Cro/CI family compare
PP_1804 +0.8 6.6 Glycosyl transferase WbpL compare
PP_0948 +0.8 1.9 Phosphocarrier protein HPr compare
PP_0484 +0.8 5.4 transporter of an unknown substrate compare
PP_1318 +0.8 5.5 Cytochrome b compare
PP_1805 +0.8 7.2 Polysaccharide biosynthesis protein compare
PP_4121 +0.8 3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_5483 +0.8 1.7 conserved protein of unknown function compare
PP_1578 +0.8 4.6 conserved protein of unknown function compare
PP_4124 +0.8 4.4 NADH-quinone oxidoreductase subunit G compare
PP_4386 +0.7 3.5 flagellar basal-body rod protein FlgF compare
PP_1319 +0.7 3.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2889 +0.7 3.0 putative Transmembrane regulator PrtR compare
PP_1803 +0.7 6.1 UDP-sugar epimerase compare
PP_1317 +0.7 3.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4259 +0.7 4.6 Iron-sulfur cluster-binding protein compare
PP_5008 +0.7 1.5 Poly granule-associated protein compare
PP_1570 +0.7 3.5 Head-tail adaptor compare
PP_4126 +0.7 1.3 NADH-quinone oxidoreductase subunit I compare
PP_5243 +0.7 4.2 putative hydrolase compare
PP_1310 +0.7 2.4 conserved hypothetical protein compare
PP_4870 +0.7 3.6 Azurin compare
PP_1800 +0.7 5.2 Oxidoreductase Rmd compare
PP_2309 +0.7 1.4 conserved protein of unknown function compare
PP_1562 +0.7 1.7 putative Phage terminase, small subunit compare
PP_4358 +0.7 4.0 flagellar synthesis, switching and energizing component compare
PP_3810 +0.7 2.3 conserved protein of unknown function compare
PP_2878 +0.7 2.0 conserved protein of unknown function compare
PP_4941 +0.7 4.0 conserved exported protein of unknown function compare
PP_1576 +0.7 3.3 putative Immunity protein compare
PP_4129 +0.7 2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1580 +0.7 4.9 conserved protein of unknown function compare
PP_4957 +0.6 2.8 conserved protein of unknown function compare
PP_1558 +0.6 3.6 conserved protein of unknown function compare
PP_1655 +0.6 3.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4556 +0.6 2.2 conserved protein of unknown function compare
PP_1269 +0.6 1.1 Universal stress protein family compare
PP_4364 +0.6 2.9 putative Anti-sigma F factor antagonist compare
PP_3726 +0.6 1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_2810 +0.6 3.6 conserved exported protein of unknown function compare
PP_1574 +0.6 3.2 conserved protein of unknown function compare
PP_1777 +0.6 5.2 phosphomannomutase compare
PP_1739 +0.6 0.8 conserved membrane protein of unknown function compare
PP_0585 +0.6 1.3 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0273 +0.6 2.7 conserved protein of unknown function compare
PP_5240 +0.6 1.4 Response regulator compare
PP_2274 +0.6 3.0 conserved protein of unknown function compare
PP_4720 +0.6 2.0 putative RNA binding protein compare
PP_1512 +0.6 2.1 conserved protein of unknown function compare
PP_4942 +0.6 1.7 conserved protein of unknown function compare
PP_5073 +0.6 0.9 conserved exported protein of unknown function compare
PP_0869 +0.6 1.9 osmoprotectant ABC transporter permease subunit compare
PP_0204 +0.6 3.0 Transcriptional regulator, GntR family compare
PP_1575 +0.6 1.6 conserved protein of unknown function compare
PP_5145 +0.6 5.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0368 +0.6 4.8 putative Acyl-CoA dehydrogenase compare
PP_5143 +0.6 1.5 conserved membrane protein of unknown function compare
PP_4743 +0.6 2.6 conserved protein of unknown function compare
PP_5597 +0.6 1.8 conserved protein of unknown function compare
PP_3898 +0.6 2.3 conserved protein of unknown function compare
PP_4671 +0.6 2.2 conserved exported protein of unknown function compare
PP_4352 +0.6 4.6 flagellin export apparatus, substrate specificity protein compare
PP_0195 +0.6 1.7 conserved protein of unknown function compare
PP_5298 +0.6 1.9 putative glutamine amidotransferase compare
PP_2046 +0.6 2.7 Transcriptional regulator, LysR family compare
PP_5491 +0.6 1.1 conserved protein of unknown function with SEC-C motif domain compare
PP_1683 +0.6 1.6 Transcriptional regulator, MarR family compare
PP_4054 +0.6 1.3 conserved protein of unknown function compare
PP_0240 +0.6 1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_3883 +0.6 1.6 putative Phage holin compare
PP_0035 +0.6 1.3 putative bactoprenol-linked glycose transferase compare
PP_2422 +0.6 2.1 conserved protein of unknown function compare
PP_0153 +0.5 1.1 hypothetical protein compare
PP_4394 +0.5 2.8 flagella basal body P-ring formation protein compare
PP_4122 +0.5 1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1322 +0.5 1.2 putative Lipoprotein compare
PP_0377 +0.5 1.7 coenzyme PQQ synthesis protein D compare
PP_5473 +0.5 1.8 putative transcriptional regulator, LuxR family compare
PP_1199 +0.5 3.2 toxin-antitoxin system, higB toxin like compare
PP_3947 +0.5 3.1 nicotinate dehydrogenase subunit A compare
PP_1567 +0.5 2.6 Capsid protein compare
PP_1579 +0.5 4.5 conserved protein of unknown function compare
PP_0547 +0.5 2.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4701 +0.5 0.8 glucose-6-phosphate isomerase compare
PP_5157 +0.5 2.5 conserved exported protein of unknown function compare
PP_5202 +0.5 1.5 putative cell division protein compare
PP_2078 +0.5 1.8 transcriptional activator protein LysR compare
PP_4171 +0.5 4.5 conserved exported protein of unknown function compare
PP_0269 +0.5 2.6 putative Glutamate synthase, large subunit compare
PP_4159 +0.5 1.9 Potassium-transporting ATPase C chain compare
PP_0058 +0.5 4.0 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_2581 +0.5 1.4 conserved protein of unknown function compare
PP_2376 +0.5 4.2 Esterified fatty acid cis/trans isomerase compare
PP_5575 +0.5 1.7 conserved protein of unknown function compare
PP_3676 +0.5 2.7 conserved protein of unknown function compare
PP_1404 +0.5 2.2 conserved protein of unknown function compare
PP_5445 +0.5 1.5 conserved protein of unknown function compare
PP_4760 +0.5 2.1 Alcohol dehydrogenase, zinc-containing compare
PP_2260 +0.5 1.8 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_3094 +0.5 2.6 conserved exported protein of unknown function compare
PP_0626 +0.5 3.3 NADH dehydrogenase compare
PP_3926 +0.5 1.2 short-chain dehydrogenase compare
PP_4344 +0.5 3.7 flagellar export pore protein compare
PP_5619 +0.5 1.8 protein of unknown function compare
PP_1844 +0.5 2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1460 +0.5 3.8 putative Membrane protein compare
PP_4368 +0.5 3.4 flagellar motor switch protein compare
PP_4529 +0.5 1.8 conserved protein of unknown function compare
PP_4388 +0.5 3.9 Flagellar hook protein FlgE compare
PP_4366 +0.5 3.9 flagellum-specific ATP synthase compare
PP_2530 +0.5 1.2 conserved protein of unknown function compare
PP_1930 +0.5 2.4 arsenic resistance transcriptional regulator compare
PP_5557 +0.5 1.4 protein of unknown function compare
PP_4120 +0.5 2.0 NADH-quinone oxidoreductase subunit B compare
PP_2118 +0.5 0.9 conserved protein of unknown function compare
PP_1577 +0.5 4.0 Phage tail tape meausure protein, lambda family compare
PP_4785 +0.5 2.8 conserved exported protein of unknown function compare
PP_0781 +0.5 2.1 conserved protein of unknown function compare
PP_2539 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_1572 +0.5 2.8 conserved protein of unknown function compare
PP_0556 +0.5 1.7 Acetoin catabolism protein compare
PP_1544 +0.5 2.0 conserved protein of unknown function compare
PP_5054 +0.5 0.9 glutaredoxin 3 compare
PP_1581 +0.5 3.9 BNR domain protein compare
PP_4337 +0.5 2.4 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0893 +0.5 1.5 ThiJ/PfpI family protein compare
PP_4130 +0.5 2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4353 +0.5 2.7 Flagellar biosynthetic protein fliR compare
PP_1038 +0.5 1.7 conserved protein of unknown function compare
PP_3198 +0.5 1.6 Ferredoxin, 2Fe-2S compare
PP_1573 +0.5 2.2 putative Major tail protein compare
PP_2890 +0.5 2.7 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_1560 +0.5 2.0 conserved protein of unknown function compare
PP_1559 +0.5 1.5 Holin compare
PP_3899 +0.5 1.7 conserved protein of unknown function, hicB family compare
PP_1566 +0.5 1.8 Peptidase U35 compare
PP_0737 +0.5 2.4 lipid A 3-O-deacylase compare
PP_3880 +0.5 0.9 conserved exported protein of unknown function compare
PP_4238 +0.5 1.8 conserved protein of unknown function compare
PP_1265 +0.4 1.3 conserved protein of unknown function compare
PP_t49 +0.4 2.4 tRNA-Met compare
PP_0164 +0.4 1.9 conserved protein of unknown function compare
PP_1439 +0.4 1.0 conserved exported protein of unknown function compare
PP_4396 +0.4 1.9 conserved protein of unknown function compare
PP_4391 +0.4 1.9 flagellar basal-body rod protein FlgB compare
PP_0126 +0.4 2.1 Cytochrome c4 compare
PP_5381 +0.4 1.4 hypothetical protein compare
PP_3375 +0.4 2.8 endonuclease I compare
PP_1864 +0.4 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms