Experiment set36IT073 for Pseudomonas putida KT2440
R2A with Vogels_fungal_media 0.8X
Group: supernatant control:fungal mediaMedia: R2A + Vogels_fungal_media, filtered (0.8 X)
Culturing: Putida_ML5, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Cat_Manuel on 1-Feb-22
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 4 genes in this experiment
For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440
For supernatant control:fungal media Vogels_fungal_media, filtered across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Oxidative stress | 1 |
| Terminal cytochrome C oxidases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| arsenite to oxygen electron transfer | 2 | 1 | 1 |
| arsenite to oxygen electron transfer (via azurin) | 3 | 1 | 1 |
| aerobic respiration II (cytochrome c) (yeast) | 4 | 3 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| Fe(II) oxidation | 6 | 3 | 1 |