Experiment set36IT072 for Pseudomonas putida KT2440

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
PP_4265 -4.5 -3.1 DNA-binding transcriptional dual regulator compare
PP_0856 -4.5 -6.8 conserved lipoprotein of unknown function compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1654 -3.5 -3.4 cysteine synthase B compare
PP_4693 -2.9 -7.5 RNA polymerase-binding transcription factor DksA compare
PP_4004 -2.9 -10.0 DNA translocase FtsK compare
PP_4723 -2.7 -1.9 Carbamoyl-phosphate synthase large chain compare
PP_4804 -2.6 -5.2 RlpA-like lipoprotein compare
PP_0691 -2.5 -4.1 Glutamate 5-kinase compare
PP_2371 -2.5 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_4724 -2.5 -2.4 Carbamoyl-phosphate synthase small chain compare
PP_1002 -2.4 -8.7 arginine/ornithine antiporter compare
PP_1001 -2.3 -5.6 arginine deiminase compare
PP_4895 -2.2 -5.0 tRNA dimethylallyltransferase compare
PP_0393 -2.2 -4.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1000 -2.1 -6.7 ornithine carbamoyltransferase, catabolic compare
PP_4999 -2.1 -1.4 dihydroorotase-like protein compare
PP_1353 -2.1 -3.7 conserved membrane protein of unknown function compare
PP_1734 -2.0 -6.0 Probable septum site-determining protein MinC compare
PP_0846 -2.0 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4058 -2.0 -10.8 1,4-alpha-glucan branching enzyme compare
PP_1215 -1.9 -3.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_2370 -1.9 -1.9 conserved protein of unknown function compare
PP_3999 -1.9 -7.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0999 -1.8 -4.6 carbamate kinase compare
PP_0406 -1.8 -3.1 Nucleotidyltransferase family protein compare
PP_4560 -1.7 -5.7 putative Ribonuclease BN compare
PP_0888 -1.7 -3.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1428 -1.7 -3.7 Sigma factor AlgU negative regulatory protein compare
PP_0001 -1.7 -2.0 probable chromosome-partitioning protein compare
PP_4874 -1.7 -2.4 50S ribosomal protein L9 compare
PP_1664 -1.6 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1232 -1.6 -8.1 conserved exported protein of unknown function compare
PP_1186 -1.5 -2.5 two component system DNA-binding transcriptional dual regulator compare
PP_1733 -1.5 -4.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0719 -1.5 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1217 -1.5 -6.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0998 -1.4 -6.8 conserved protein of unknown function compare
PP_5652 -1.4 -2.0 conserved protein of unknown function, phage origin compare
PP_2328 -1.4 -4.2 Phosphoadenosine phosphosulfate reductase compare
PP_1898 -1.4 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5329 -1.4 -3.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0566 -1.4 -1.6 translation-related factor compare
PP_4122 -1.3 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1216 -1.3 -3.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5095 -1.3 -1.5 pyrroline-5-carboxylate reductase compare
PP_4994 -1.3 -4.8 conserved protein of unknown function compare
PP_1208 -1.3 -3.0 conserved protein of unknown function, SlyX family compare
PP_1468 -1.2 -2.1 Tyrosine recombinase XerD compare
PP_4008 -1.2 -4.2 ATP-dependent serine protease compare
PP_3904 -1.2 -4.0 conserved protein of unknown function compare
PP_0339 -1.2 -3.0 Pyruvate dehydrogenase E1 component compare
PP_4471 -1.1 -4.8 Magnesium transporter compare
PP_4561 -1.1 -1.1 stress response protein compare
PP_1632 -1.1 -1.6 conserved protein of unknown function compare
PP_0833 -1.1 -2.0 queuine tRNA-ribosyltransferase compare
PP_2327 -1.1 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4937 -1.1 -3.7 toluene tolerance protein compare
PP_0401 -1.1 -3.6 Ribosomal RNA small subunit methyltransferase A compare
PP_0434 -1.1 -4.6 Anhydro-N-acetylmuramic acid kinase compare
PP_4700 -1.0 -2.7 pantothenate synthetase compare
PP_0630 -1.0 -1.5 DNA gyrase inhibitor YacG compare
PP_4109 -1.0 -2.5 conserved protein of unknown function compare
PP_4880 -1.0 -6.2 exoribonuclease R compare
PP_1076 -1.0 -5.3 aquaglyceroporin compare
PP_5430 -1.0 -4.1 protein of unknown function compare
PP_2765 -0.9 -2.0 putative Sulfonate monooxygenase MsuD compare
PP_1198 -0.9 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1022 -0.9 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2615 -0.9 -2.4 hemolysin-coregulated protein compare
PP_4917 -0.9 -3.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3840 -0.9 -1.7 conserved protein of unknown function compare
PP_4814 -0.9 -2.6 ATP-dependent protease La domain protein compare
PP_t29 -0.9 -1.4 tRNA-Ala compare
PP_5198 -0.9 -3.2 conserved protein of unknown function compare
PP_5217 -0.9 -6.2 Polyphosphate kinase compare
PP_4098 -0.9 -2.0 UvrABC system protein C compare
PP_5310 -0.9 -4.4 junction-specific ATP-dependent DNA helicase compare
PP_4964 -0.9 -2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2225 -0.8 -3.8 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_0236 -0.8 -2.4 NAD(P)H-dependent FMN reductase subunit compare
PP_2336 -0.8 -2.1 aconitate hydratase 1 compare
PP_5328 -0.8 -2.0 putative phosphate transport system permease protein compare
PP_4593 -0.8 -1.7 conserved protein of unknown function compare
PP_1764 -0.8 -2.0 Phosphoglycolate phosphatase 2 compare
PP_0855 -0.8 -1.6 conserved protein of unknown function compare
PP_1783 -0.8 -1.6 dTDP-glucose pyrophosphorylase compare
PP_2203 -0.8 -2.2 conserved protein of unknown function compare
PP_2932 -0.8 -4.6 Amidase family protein compare
PP_2000 -0.8 -0.5 amidophosphoribosyl transferase compare
PP_5007 -0.8 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5706 -0.8 -1.9 Sec translocation complex - SecG subunit compare
PP_1935 -0.8 -2.8 Transcriptional regulator, Cro/CI family compare
PP_4738 -0.8 -2.8 conserved exported protein of unknown function compare
PP_0164 -0.8 -4.2 conserved protein of unknown function compare
PP_2145 -0.8 -1.7 beta-N-acetylglucosaminidase compare
PP_5027 -0.8 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2568 -0.8 -1.1 Ring-cleaving dioxygenase compare
PP_5486 -0.7 -1.4 conserved protein of unknown function compare
PP_0735 -0.7 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_1055 -0.7 -1.0 Type II secretion pathway protein GspN compare
PP_5230 -0.7 -2.1 Tyrosine recombinase XerC compare
PP_0958 -0.7 -2.9 phospholipid ABC transporter ATP-binding subunit compare
PP_0082 -0.7 -2.9 tryptophan synthase alpha chain compare
PP_1528 -0.7 -1.0 conserved protein of unknown function compare
PP_4875 -0.7 -2.8 conserved membrane protein of unknown function compare
PP_0150 -0.7 -2.3 conserved exported protein of unknown function compare
PP_1731 -0.7 -2.4 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5507 -0.7 -2.1 protein of unknown function compare
PP_5644 -0.7 -2.0 conserved membrane protein of unknown function compare
PP_4697 -0.7 -2.6 poly(A) polymerase compare
PP_2550 -0.7 -1.7 putative transcriptional regulatory protein compare
PP_4726 -0.7 -1.4 Chaperone protein DnaJ compare
PP_1824 -0.7 -1.5 Smr domain protein compare
PP_4254 -0.7 -1.7 conserved protein of unknown function compare
PP_4342 -0.7 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_4129 -0.7 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2217 -0.7 -1.9 enoyl-CoA hydratase compare
PP_0184 -0.7 -3.8 Argininosuccinate lyase compare
PP_1912 -0.7 -2.6 Phosphate acyltransferase compare
PP_1987 -0.6 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_0405 -0.6 -4.2 conserved protein of unknown function compare
PP_1609 -0.6 -1.6 conserved protein of unknown function compare
PP_1906 -0.6 -1.7 ribosomal large subunit pseudouridine synthase C compare
PP_4131 -0.6 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_4247 -0.6 -1.2 Exonuclease compare
PP_5583 -0.6 -0.7 conserved protein of unknown function compare
PP_5039 -0.6 -2.3 conserved protein of unknown function compare
PP_5717 -0.6 -1.6 conserved protein of unknown function compare
PP_4124 -0.6 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_1410 -0.6 -0.8 conserved protein of unknown function compare
PP_1142 -0.6 -1.0 conserved protein of unknown function compare
PP_5327 -0.6 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_2640 -0.6 -2.3 Acetyltransferase, GNAT family compare
PP_4296 -0.6 -1.2 conserved exported protein of unknown function compare
PP_2307 -0.6 -2.0 conserved protein of unknown function compare
PP_4792 -0.6 -1.3 conserved exported protein of unknown function compare
PP_0949 -0.6 -2.9 putative ATP-binding protein UPF0042 compare
PP_4902 -0.6 -1.7 Oligoribonuclease compare
PP_5445 -0.6 -1.2 conserved protein of unknown function compare
PP_2748 -0.6 -1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3043 -0.6 -1.6 conserved protein of unknown function compare
PP_1187 -0.6 -3.1 sensor protein compare
PP_2737 -0.6 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4482 -0.6 -1.8 Transcriptional regulator, AraC family compare
PP_5500 -0.6 -2.0 protein of unknown function compare
PP_4204 -0.6 -2.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1605 -0.6 -1.4 Ribonuclease HII compare
PP_0841 -0.6 -1.8 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4212 -0.6 -3.0 pyoverdine biosynthesis related protein compare
PP_5014 -0.6 -1.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5SB -0.6 -2.3 5S ribosomal RNA compare
PP_4419 -0.6 -2.3 transposase compare
PP_5701 -0.6 -1.1 conserved protein of unknown function compare
PP_5359 -0.6 -1.9 CobW/P47K family protein compare
PP_3770 -0.6 -2.3 conserved protein of unknown function compare
PP_0832 -0.6 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2456 -0.6 -2.1 D-ribose ABC transporter - permease subunit compare
PP_2341 -0.6 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2299 -0.6 -2.4 Trigger factor compare
PP_4909 -0.6 -3.2 phosphoserine phosphatase compare
PP_4418 -0.6 -2.4 conserved protein of unknown function compare
PP_2214 -0.6 -1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0266 -0.6 -3.5 Agmatine deiminase compare
PP_1629 -0.6 -3.3 Protein RecA compare
PP_0703 -0.5 -2.4 putative Transmembrane sensor compare
PP_1503 -0.5 -1.8 conserved protein of unknown function compare
PP_2144 -0.5 -2.3 Transcriptional regulator, TetR family compare
PP_2898 -0.5 -1.9 conserved exported protein of unknown function compare
PP_2417 -0.5 -1.5 putative Iron ABC transporter, permease protein compare
PP_5090 -0.5 -1.2 putative cell division protein compare
PP_0795 -0.5 -3.4 fructose PTS permease - IIBC component compare
PP_5489 -0.5 -1.7 conserved protein of unknown function compare
PP_1045 -0.5 -1.3 Type II secretion pathway protein XcpP compare
PP_2631 -0.5 -1.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1513 -0.5 -1.2 Ribosomal RNA small subunit methyltransferase J compare
PP_t12 -0.5 -0.8 tRNA-Thr compare
PP_4138 -0.5 -2.6 Chromate reductase compare
PP_1845 -0.5 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_1224 -0.5 -2.8 periplasmic subunit of the TolQRA transport system compare
PP_2442 -0.5 -0.5 conserved protein of unknown function, DUF480 family compare
PP_0123 -0.5 -3.2 DNA polymerase I, 5 compare
PP_4925 -0.5 -1.9 conserved protein of unknown function compare
PP_5686 -0.5 -1.6 protein of unknown function compare
PP_0534 -0.5 -2.5 putative Transcriptional regulator PfeR compare
PP_3480 -0.5 -1.7 conserved protein of unknown function compare
PP_3637 -0.5 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0694 -0.5 -2.4 conserved protein of unknown function compare
PP_4009 -0.5 -1.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_3064 -0.5 -1.8 Phage tail protein compare
PP_2253 -0.5 -0.8 Transcriptional regulator, GntR family compare
PP_5000 -0.5 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_2959 -0.5 -2.0 Alkylhydroperoxidase AhpD domain protein compare
PP_4030 -0.5 -2.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_2153 -0.5 -1.2 conserved protein of unknown function compare
PP_0872 -0.5 -2.8 Peptide chain release factor 3 compare
PP_5352 -0.5 -3.9 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0065 -0.5 -1.4 NAD-binding component of TrK potassium transporter compare
PP_5216 -0.5 -0.9 exopolyphosphatase compare
PP_3946 -0.5 -1.0 HTH-type transcriptional repressor NicR compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms