Experiment set36IT071 for Pseudomonas putida KT2440

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
PP_0691 -4.8 -4.7 Glutamate 5-kinase compare
PP_0856 -4.5 -8.0 conserved lipoprotein of unknown function compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2371 -3.7 -7.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4700 -3.6 -6.0 pantothenate synthetase compare
PP_3999 -3.1 -9.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4265 -3.1 -4.7 DNA-binding transcriptional dual regulator compare
PP_4724 -2.9 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_4693 -2.9 -7.4 RNA polymerase-binding transcription factor DksA compare
PP_4804 -2.9 -5.7 RlpA-like lipoprotein compare
PP_0833 -2.8 -3.7 queuine tRNA-ribosyltransferase compare
PP_4895 -2.8 -5.6 tRNA dimethylallyltransferase compare
PP_4004 -2.7 -9.7 DNA translocase FtsK compare
PP_4723 -2.6 -3.6 Carbamoyl-phosphate synthase large chain compare
PP_1002 -2.4 -8.1 arginine/ornithine antiporter compare
PP_1001 -2.4 -4.7 arginine deiminase compare
PP_0999 -2.2 -4.9 carbamate kinase compare
PP_4999 -2.2 -1.5 dihydroorotase-like protein compare
PP_0998 -2.0 -9.2 conserved protein of unknown function compare
PP_1000 -2.0 -7.4 ornithine carbamoyltransferase, catabolic compare
PP_1734 -1.9 -5.8 Probable septum site-determining protein MinC compare
PP_2370 -1.9 -2.8 conserved protein of unknown function compare
PP_0719 -1.8 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4058 -1.7 -10.0 1,4-alpha-glucan branching enzyme compare
PP_0406 -1.7 -4.1 Nucleotidyltransferase family protein compare
PP_0630 -1.7 -2.0 DNA gyrase inhibitor YacG compare
PP_4560 -1.6 -5.6 putative Ribonuclease BN compare
PP_4296 -1.6 -2.6 conserved exported protein of unknown function compare
PP_1733 -1.6 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_1217 -1.5 -7.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4964 -1.5 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1215 -1.5 -4.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1232 -1.5 -8.1 conserved exported protein of unknown function compare
PP_0293 -1.5 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2145 -1.4 -4.5 beta-N-acetylglucosaminidase compare
PP_1216 -1.4 -4.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1898 -1.4 -3.8 MotA/TolQ/ExbB proton channel family protein compare
PP_1664 -1.4 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1632 -1.4 -2.4 conserved protein of unknown function compare
PP_1764 -1.4 -3.7 Phosphoglycolate phosphatase 2 compare
PP_2328 -1.4 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_1353 -1.3 -3.8 conserved membrane protein of unknown function compare
PP_0339 -1.3 -3.2 Pyruvate dehydrogenase E1 component compare
PP_4008 -1.2 -5.7 ATP-dependent serine protease compare
PP_1198 -1.2 -4.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4880 -1.2 -6.9 exoribonuclease R compare
PP_0888 -1.1 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_0855 -1.1 -2.0 conserved protein of unknown function compare
PP_1468 -1.1 -2.5 Tyrosine recombinase XerD compare
PP_4917 -1.1 -4.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1528 -1.1 -2.0 conserved protein of unknown function compare
PP_4098 -1.1 -3.2 UvrABC system protein C compare
PP_5329 -1.0 -3.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4937 -1.0 -3.7 toluene tolerance protein compare
PP_0393 -1.0 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4642 -1.0 -1.5 Cyclic diguanosine monophosphate-binding protein compare
PP_1076 -1.0 -4.2 aquaglyceroporin compare
PP_2107 -1.0 -2.3 conserved protein of unknown function compare
PP_1022 -0.9 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_2932 -0.9 -5.3 Amidase family protein compare
PP_4342 -0.9 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_2327 -0.9 -3.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1142 -0.9 -1.4 conserved protein of unknown function compare
PP_1783 -0.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_5486 -0.9 -2.6 conserved protein of unknown function compare
PP_1214 -0.9 -2.3 putative transcriptional regulatory protein compare
PP_4471 -0.9 -4.1 Magnesium transporter compare
PP_4482 -0.8 -2.9 Transcriptional regulator, AraC family compare
PP_5232 -0.8 -1.5 conserved protein of unknown function compare
PP_4994 -0.8 -2.5 conserved protein of unknown function compare
PP_2750 -0.8 -3.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4961 -0.8 -1.6 putative Lipoprotein compare
PP_2459 -0.8 -2.3 ribose pyranase compare
PP_1187 -0.8 -4.9 sensor protein compare
PP_4942 -0.8 -2.5 conserved protein of unknown function compare
PP_0405 -0.8 -5.4 conserved protein of unknown function compare
PP_0725 -0.8 -3.5 conserved hypothetical TPR repeat protein compare
PP_5328 -0.8 -1.1 putative phosphate transport system permease protein compare
PP_2433 -0.8 -2.1 conserved protein of unknown function compare
PP_0949 -0.8 -3.1 putative ATP-binding protein UPF0042 compare
PP_5327 -0.7 -2.9 putative phosphate ABC transporter, permease subunit compare
PP_3840 -0.7 -1.5 conserved protein of unknown function compare
PP_5008 -0.7 -1.3 Poly granule-associated protein compare
PP_4247 -0.7 -1.6 Exonuclease compare
PP_5644 -0.7 -2.4 conserved membrane protein of unknown function compare
PP_5583 -0.7 -2.1 conserved protein of unknown function compare
PP_4124 -0.7 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_4696 -0.7 -3.4 Nitrogen regulation protein NR(I) compare
PP_0434 -0.7 -3.1 Anhydro-N-acetylmuramic acid kinase compare
PP_0241 -0.7 -2.2 Transporter compare
PP_4701 -0.7 -0.8 glucose-6-phosphate isomerase compare
PP_5095 -0.7 -1.3 pyrroline-5-carboxylate reductase compare
PP_5248 -0.7 -1.4 putative hydrolase compare
PP_0872 -0.7 -3.3 Peptide chain release factor 3 compare
PP_4726 -0.7 -2.0 Chaperone protein DnaJ compare
PP_5198 -0.7 -1.8 conserved protein of unknown function compare
PP_2402 -0.7 -1.8 putative Sensor histidine kinase compare
PP_0959 -0.7 -1.5 phospholipid ABC transporter compare
PP_1268 -0.7 -2.5 putative HtrA suppressor protein sohA compare
PP_4120 -0.7 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_5310 -0.7 -3.9 junction-specific ATP-dependent DNA helicase compare
PP_2000 -0.7 -0.6 amidophosphoribosyl transferase compare
PP_3771 -0.7 -2.0 conserved protein of unknown function compare
PP_1428 -0.7 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_1185 -0.7 -3.7 Outer membrane protein H1 compare
PP_0345 -0.7 -1.2 putative Heptose kinase WapP compare
PP_4546 -0.6 -2.5 ATP-dependent helicase HrpA compare
PP_5094 -0.6 -3.3 putative enzyme with PLP binding domain compare
PP_1912 -0.6 -2.4 Phosphate acyltransferase compare
PP_1994 -0.6 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_5507 -0.6 -2.8 protein of unknown function compare
PP_3198 -0.6 -1.1 Ferredoxin, 2Fe-2S compare
PP_1005 -0.6 -2.3 Heme oxygenase compare
PP_0065 -0.6 -1.7 NAD-binding component of TrK potassium transporter compare
PP_1935 -0.6 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1045 -0.6 -1.4 Type II secretion pathway protein XcpP compare
PP_2144 -0.6 -2.0 Transcriptional regulator, TetR family compare
PP_0905 -0.6 -1.5 conserved exported protein of unknown function compare
PP_4332 -0.6 -2.8 Chemotaxis protein CheW compare
PP_1208 -0.6 -1.5 conserved protein of unknown function, SlyX family compare
PP_2510 -0.6 -1.0 conserved protein of unknown function compare
PP_0846 -0.6 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_4121 -0.6 -2.1 NADH-quinone oxidoreductase subunit C/D compare
PP_5217 -0.6 -4.4 Polyphosphate kinase compare
PP_0266 -0.6 -3.9 Agmatine deiminase compare
PP_3617 -0.6 -2.7 conserved membrane protein of unknown function compare
PP_3748 -0.6 -2.2 conserved hypothetical protein compare
PP_1454 -0.6 -1.9 conserved protein of unknown function compare
PP_2441 -0.6 -1.8 conserved protein of unknown function compare
PP_5045 -0.6 -2.5 tRNA sulfurtransferase compare
PP_3307 -0.6 -1.5 conserved protein of unknown function compare
PP_5610 -0.6 -1.5 protein of unknown function compare
PP_1417 -0.6 -3.3 putative Tricarboxylate transport protein TctB compare
PP_3034 -0.6 -1.7 putative Regulator protein compare
PP_2958 -0.6 -2.8 Glutaredoxin compare
PP_0695 -0.6 -3.4 conserved protein of unknown function compare
PP_2655 -0.6 -2.4 conserved protein of unknown function compare
PP_0951 -0.6 -3.6 Ribosome hibernation promoting factor compare
PP_1355 -0.6 -3.8 Muropeptide permease AmpG compare
PP_2631 -0.6 -1.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4989 -0.6 -1.5 Protein PilJ compare
PP_4584 -0.6 -2.6 putative endonuclease compare
PP_0685 -0.6 -1.9 conserved protein of unknown function compare
PP_4045 -0.6 -2.0 conserved protein of unknown function compare
PP_0958 -0.6 -2.8 phospholipid ABC transporter ATP-binding subunit compare
PP_1513 -0.6 -1.8 Ribosomal RNA small subunit methyltransferase J compare
PP_3591 -0.6 -1.8 Delta 1-piperideine-2-carboxylate reductase compare
PP_5717 -0.6 -1.4 conserved protein of unknown function compare
PP_1075 -0.6 -3.4 glycerol kinase compare
PP_2336 -0.6 -1.5 aconitate hydratase 1 compare
PP_4212 -0.6 -2.9 pyoverdine biosynthesis related protein compare
PP_2999 -0.6 -1.0 Glyoxalase family protein compare
PP_0164 -0.5 -2.5 conserved protein of unknown function compare
PP_2959 -0.5 -2.0 Alkylhydroperoxidase AhpD domain protein compare
PP_0123 -0.5 -3.7 DNA polymerase I, 5 compare
PP_2307 -0.5 -2.2 conserved protein of unknown function compare
PP_0150 -0.5 -2.4 conserved exported protein of unknown function compare
PP_2414 -0.5 -0.8 conserved exported protein of unknown function compare
PP_0007 -0.5 -1.9 conserved hypothetical protein compare
PP_4480 -0.5 -3.1 arginine N-succinyltransferase, subunit alpha compare
PP_4697 -0.5 -2.4 poly(A) polymerase compare
PP_4419 -0.5 -2.2 transposase compare
PP_0048 -0.5 -0.8 conserved protein of unknown function compare
PP_1211 -0.5 -2.4 conserved protein of unknown function compare
PP_2337 -0.5 -1.0 aconitate isomerase compare
PP_2442 -0.5 -1.7 conserved protein of unknown function, DUF480 family compare
PP_0292 -0.5 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0003 -0.5 -1.8 16S RNA methyltransferase compare
PP_4282 -0.5 -2.3 Aquaporin Z compare
PP_2840 -0.5 -2.8 putative Membrane protein compare
PP_3241 -0.5 -0.8 conserved exported protein of unknown function compare
PP_2044 -0.5 -0.9 conserved inner membrane protein of unknown function compare
PP_2858 -0.5 -1.5 conserved exported protein of unknown function compare
PP_2225 -0.5 -2.4 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_1709 -0.5 -1.9 Fumarylacetoacetate hydrolase family protein compare
PP_3366 -0.5 -2.7 Transcriptional regulator, LysR family compare
PP_2555 -0.5 -2.1 conserved protein of unknown function compare
PP_0960 -0.5 -2.7 phospholipid ABC transporter binding protein compare
PP_4993 -0.5 -2.4 Glutathione synthetase compare
PP_2073 -0.5 -2.1 Acetyltransferase, GNAT family compare
PP_3679 -0.5 -1.9 conserved protein of unknown function compare
PP_1697 -0.5 -1.4 transcriptional regulator, GntR family compare
PP_1206 -0.5 -3.1 basic-amino-acid specific porin OprD compare
PP_2214 -0.5 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0758 -0.5 -2.1 conserved protein of unknown function compare
PP_4874 -0.5 -0.8 50S ribosomal protein L9 compare
PP_5337 -0.5 -2.1 LysR family transcriptional regulator compare
PP_1825 -0.5 -1.5 conserved exported protein of unknown function compare
PP_3148 -0.5 -3.5 putative Glutamine synthetase compare
PP_1204 -0.5 -2.5 putative Lipoprotein compare
PP_0401 -0.5 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_5582 -0.5 -0.8 conserved protein of unknown function compare
PP_0735 -0.5 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_3064 -0.5 -1.3 Phage tail protein compare
PP_0566 -0.5 -0.7 translation-related factor compare
PP_4056 -0.5 -2.4 putative phosphohydrolase of unknown function compare
PP_2247 -0.5 -1.5 putative Endoribonuclease compare
PP_2142 -0.4 -0.9 Cell division inhibitor SulA compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Pseudomonas putida KT2440

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms