Experiment set36IT071 for Escherichia coli BW25113

Compare to:

Phage_N4_cage_4_mice _Feces_40 hr

Group: phage
Media: mouse gut + Phage_N4 (1 MOI) + cage (4 )
Culturing: Keio_ML9a, mouse gut, Anaerobic, at 37 (C)
Growth: about 40.0 generations
By: Denish/Ben on 4-Jun-19

Specific Phenotypes

For 13 genes in this experiment

For phage Phage_N4 in Escherichia coli BW25113

For phage Phage_N4 across organisms

SEED Subsystems

Subsystem #Specific
D-Tagatose and Galactitol Utilization 3
L-Arabinose utilization 3
D-Galacturonate and D-Glucuronate Utilization 1
Entner-Doudoroff Pathway 1
Glycolysis and Gluconeogenesis 1
Glycolysis and Gluconeogenesis, including Archaeal enzymes 1
L-fucose utilization 1
YeiH 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
galactitol degradation 5 5 3
D-galactosamine and N-acetyl-D-galactosamine degradation 4 4 2
N-acetyl-D-galactosamine degradation 5 4 2
lactose degradation I 5 2 2
D-serine degradation 3 3 1
L-tryptophan degradation II (via pyruvate) 3 3 1
L-serine degradation 3 3 1
L-cysteine degradation II 3 2 1
L-methionine degradation II 3 2 1
D-tagatose degradation 3 1 1
D-arabinose degradation II 4 4 1
D-fructuronate degradation 4 4 1
L-fucose degradation I 4 4 1
superpathway of hexitol degradation (bacteria) 18 18 4
lactate biosynthesis (archaea) 5 3 1
felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis 5 2 1
L-threonine degradation I 6 6 1
L-methionine biosynthesis II 6 5 1
nucleoside and nucleotide degradation (halobacteria) 6 3 1
L-isoleucine biosynthesis I (from threonine) 7 7 1
superpathway of β-D-glucuronosides degradation 7 7 1
glycine betaine degradation III 7 4 1
L-mimosine degradation 8 4 1
glycine betaine degradation I 8 4 1
glutathione-mediated detoxification I 8 3 1
Entner-Doudoroff pathway III (semi-phosphorylative) 9 6 1
superpathway of hexuronide and hexuronate degradation 10 10 1
Rubisco shunt 10 9 1
glycolysis IV 10 8 1
glycolysis V (Pyrococcus) 10 7 1
photorespiration II 10 6 1
glycolysis II (from fructose 6-phosphate) 11 11 1
glycolysis III (from glucose) 11 11 1
glycolysis VI (from fructose) 11 8 1
homolactic fermentation 12 12 1
superpathway of fucose and rhamnose degradation 12 12 1
superpathway of L-isoleucine biosynthesis I 13 13 1
gluconeogenesis I 13 13 1
glycolysis I (from glucose 6-phosphate) 13 13 1
hypoglycin biosynthesis 14 4 1
Bifidobacterium shunt 15 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
glycerol degradation to butanol 16 11 1
superpathway of glycolysis and the Entner-Doudoroff pathway 17 17 1
superpathway of branched chain amino acid biosynthesis 17 17 1
superpathway of glucose and xylose degradation 17 17 1
superpathway of L-threonine metabolism 18 16 1
gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
hexitol fermentation to lactate, formate, ethanol and acetate 19 19 1
superpathway of anaerobic sucrose degradation 19 17 1
superpathway of N-acetylneuraminate degradation 22 22 1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle 22 18 1
purine nucleobases degradation II (anaerobic) 24 17 1
ethene biosynthesis V (engineered) 25 18 1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass 26 25 1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) 26 19 1
1-butanol autotrophic biosynthesis (engineered) 27 19 1
superpathway of microbial D-galacturonate and D-glucuronate degradation 31 19 1
superpathway of pentose and pentitol degradation 42 18 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 22 1